Chromosome X - RH Maps - Single Contig

Chromosome X - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_028427	NT_028413	NT_033330	NT_025302	NT_011735	NT_029505	NT_030875	NT_011649
NT_025291	NT_030874	NT_030885	NT_011812	NT_011832	NT_030887	NT_011775	NT_011772
NT_033338	NT_025352	NT_011724	NT_011586	NT_011754	NT_027220	NT_011694	NT_011662
NT_011530	NT_025960	NT_030890	NT_011535	NT_011536	NT_030191	NT_011753	NT_011766
NT_025940	NT_030873	NT_025323	NT_025318	NT_030889	NT_011752	NT_011757	NT_011657
NT_011793	NT_011692	NT_025348	NT_011568	NT_033332	NT_033319	NT_011611	NT_011638
NT_033329	NT_027215	NT_025961	NT_011836	NT_011799	NT_011618	NT_028400	NT_025297
NT_011630	NT_029503	NT_011669	NT_029502	NT_019696	NT_033336	NT_033321	NT_011594
NT_025273	NT_033334	NT_031924	NT_011544	NT_011597	NT_011689	NT_025320	NT_025329
NT_025376	NT_025312	NT_025306	NT_011687	NT_025949	NT_033327	NT_025330	NT_027217
NT_033328	NT_011651	NT_027218	NT_011765	NT_025280	NT_025319	NT_025299	NT_011819
NT_011783	NT_033326	NT_011565	NT_025265	NT_028405	NT_028406	NT_011588	NT_011667
NT_011613	NT_011786	NT_025267	NT_011834	NT_011719	NT_028403	NT_029504	NT_011574
NT_026503	NT_011681	NT_011851	NT_011537	NT_019686	NT_026504	NT_025309	NT_011602
NT_033323	NT_033335	NT_033325	NT_033322	NT_011598	NT_011726	NT_029507	NT_033333
NT_011637	NT_025345	NT_033324	NT_025965	NT_025307

NT_033321

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033321	AL391496	65081736	1	RH70680	X	231.63					2	AF003528,	AF003528, AL391496
S/G/Y/R/B/O	NT_033321	AL391496	65081737	1	RH41975	X	227.37					2	AF003528,	AF003528, AL391496
S/G/Y/R/B/O	NT_033321	AL158141	65260101	3	RH92962	X	231.63					1		AL158141
S/G/Y/R/B/O	NT_033321	AL158141	65261582	3	RH104173	X	231.63					1		AL158141
S/G/Y/R/B/O	NT_033321	AL158141	65358373	3	RH48563	X	234.82					1		AL158141
S/G/Y/R/B/O	NT_033321	AL139111	65386958	3	RH12518	X	231.63					1		AL139111
S/G/Y/R/B/O	NT_033321	AL139111	65386994	3	RH13758			X	2145.00			1		AL139111
S/G/Y/R/B/O	NT_033321	AL139111	65387009	3	RH26148	X	238.50					1		AL139111
S/G/Y/R/B/O	NT_033321	AL139111	65388183	3	RH38702	X	231.63					1		AL139111
S/G/Y/R/B/O	NT_033321	AL357752	65449096	3	RH7567	X	234.82			X	167.20	1		AC068231, AL357752
S/G/Y/R/B/O	NT_033321	AL357752	65449096	3	RH29207			X	2145.00			1		AC068231, AL357752
S/G/Y/R/B/O	NT_033321	AL357752	65479294	3	RH47039	X	242.08					1		AC068231
S/G/Y/R/B/O	NT_033321	AL357752	65479318	3	RH70627	X	232.31					1		AC068231, AL357752
S/G/Y/R/B/O	NT_033321	AL357752	65502567	3	RH14986			X	2145.00			1		AL357752
S/G/Y/R/B/O	NT_033321	AL357752	65507482	3	RH8698			X	2145.00			1		AC068231, AL357752
S/G/Y/R/B/O	NT_033321	AL139398	65641413	3	RH77755	X	242.71					1		AL139398
S/G/Y/R/B/O	NT_033321	AL139398	65653920	3	WI-16297					X	163.80	1		AL139398
S/G/Y/R/B/O	NT_033321	AL139398	65653920	3	RH63385	X	241.00					1		AL139398
S/G/Y/R/B/O	NT_033321	AL139398	65723828	3	SGC33537					X	163.50	1	AL139109,	AL139109, AL139398
S/G/Y/R/B/O	NT_033321	AL139398	65723828	3	RH63433	X	242.93					1	AL139109,	AL139109, AL139398
S/G/Y/R/B/O	NT_033321	AL139109	65726021	3	SGC30680					X	163.50	1		AL139109
S/G/Y/R/B/O	NT_033321	AL139109	65726021	3	RH63365	X	243.27					1		AL139109
S/G/Y/R/B/O	NT_033321	AL139109	65726085	3	RH36026	X	237.04					1		AL139109
S/G/Y/R/B/O	NT_033321	AL627390	65920002	3
S/G/Y/R/B/O	NT_033321	AL627071	66146770	1	RH67945	X	231.63					1		AL627071
S/G/Y/R/B/O	NT_033321	AL627071	66146895	1	RH103173	X	236.53					1		AL627071
S/G/Y/R/B/O	NT_033321	AL627071	66184252	1	RH71320	5	387.38					2	AC010598,	AC005406, AC010598, AL627071
S/G/Y/R/B/O	NT_033321	AL590764	66279369	2	RH38742	X	231.70					1		AL590764
S/G/Y/R/B/O	NT_033321	AL590764	66280421	2	RH14993			X	2138.00			1		AL590764
S/G/Y/R/B/O	NT_033321	AL590764	66280510	2	RH77702	X	231.70					1		AL590764
S/G/Y/R/B/O	NT_033321	AL590764	66320593	2	RH91470	X	233.09					1		AL590764
S/G/Y/R/B/O	NT_033321	AL590764	66324864	2	SGC35235					X	163.30	1		AL590764
S/G/Y/R/B/O	NT_033321	AL590764	66324970	2	RH17366	X	238.80					1		AL590764
S/G/Y/R/B/O	NT_033321	AL590764	66328220	2	RH69008	X	231.63					1		AL590764, L19546
S/G/Y/R/B/O	NT_033321	AL590764	66337123	2	RH25405	X	231.70					1	AF132033,	AF132033, AL590764
S/G/Y/R/B/O	NT_033321	AF132033	66359603	3	RH79662	X	238.50					1	AL590764,	AF132033, AF217413, AL590764
S/G/Y/R/B/O	NT_033321	AL590762	66376782	3	RH47725	X	238.28					1	AL590764,	AF217413, AL590762, AL590764
S/G/Y/R/B/O	NT_033321	AL590762	66392447	3	RH12517	X	231.63					1	AL590764,	AL590762, AL590764
S/G/Y/R/B/O	NT_033321	AL590762	66441704	3	RH35749	X	236.53					1		AL590762
S/G/Y/R/B/O	NT_033321	AL590762	66457021	3	WI-20232					X	163.60	1		AL590762
S/G/Y/R/B/O	NT_033321	AL590762	66457021	3	RH63454	X	241.00					1		AL590762
S/G/Y/R/B/O	NT_033321	AL590762	66457042	3	RH79687	X	238.28					1		AL590762
S/G/Y/R/B/O	NT_033321	AL590762	66457358	3	RH98882	X	231.70					1		AL590762
S/G/Y/R/B/O	NT_033321	AL590762	66458070	3	RH74879	X	238.71					1		AL590762
S/G/Y/R/B/O	NT_033321	AL590762	66518193	3	RH13824			X	2134.00			1		AL590762
S/G/Y/R/B/O	NT_033321	AL590762	66522546	3	RH77996	X	231.70					1
S/G/Y/R/B/O	NT_033321	AL590762	66630762	3	RH46036	X	231.70					1		AL590762
S/G/Y/R/B/O	NT_033321	AL590763	66681442	3	RH63253	X	231.70			X	172.20	1		AL590763
S/G/Y/R/B/O	NT_033321	AL590763	66683149	3	RH63406	X	231.70			X	172.20	1		AL590763
S/G/Y/R/B/O	NT_033321	AL590763	66683152	3	RH35745	X	231.63					1		AL590763

NT_033321 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033321	AL590763	66764096	3	RH14259			X	2131.00			1		AJ315767, AL159989, AL590763
S/G/Y/R/B/O	NT_033321	AL590763	66791525	3	RH25180	X	236.53					1		AJ315767, AL590763
S/G/Y/R/B/O	NT_033321	AL590763	66792892	3	RH35748	X	245.70					1		AJ315767, AL159989, AL590763
S/G/Y/R/B/O	NT_033321	AL590763	66833381	3	RH47042	X	231.80					1		AL590763
S/G/Y/R/B/O	NT_033321	AL590763	66833510	3	RH74880	X	238.28					1		AL590763
S/G/Y/R/B/O	NT_033321	AL590763	66875978	3	RH48573	X	245.02					2		AL590763, AL590763
S/G/Y/R/B/O	NT_033321	AL590763	66919178	3	WI-5741					X	189.20	1		AL590763
S/G/Y/R/B/O	NT_033321	AL590763	66942417	3	RH48573	X	245.02					2		AL590763, AL590763
S/G/Y/R/B/O	NT_033321		-		RH17885	X	239.21					0
S/G/Y/R/B/O	NT_033321		-		WI-14304					X	169.60	1	AL157699,	AL157699
S/G/Y/R/B/O	NT_033321		-		RH65456	X	237.87					1	AL136092,	AL136092, AL583837
S/G/Y/R/B/O	NT_033321		-		FB25G3					X	170.10	1	AL139110,	AL139110
S/G/Y/R/B/O	NT_033321		-		RH67448	X	239.21					0
S/G/Y/R/B/O	NT_033321		-		DXS1216					X	170.20	1	AL157699,	AL157699
S/G/Y/R/B/O	NT_033321		-		RH75291	X	238.28					1	AL356358,	AL356358
S/G/Y/R/B/O	NT_033321		-		WI-10638					X	174.00	1	AL392090,	AL392090
S/G/Y/R/B/O	NT_033321		-		RH78784	X	234.82					0	AL357752,	AC068231, AL357752
S/G/Y/R/B/O	NT_033321		-		WI-21664					X	174.90	1	AL109753,	AL109753, U72935, U75653, U97103, X83753
S/G/Y/R/B/O	NT_033321		-		RH99274	X	231.70					0