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  Chromosome 5 - RH Maps - Single Contig
 

Chromosome 5 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_007022
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007022AC008434838240631RH784585380.77    2AC018764, AC008434, AC018764
S/G/Y/R/B/O NT_007022AC022223838308931RH755825380.23    2AC008434, AC010270, AC112171, D84394, AC004182, AC008434, AC010270, AC018433, AC022223, AC112171, AL669854, AL671883, AP000507, D83769, D84394, J00139
S/G/Y/R/B/O NT_007022AC022223851755151RH603235383.41  5280.701AC008434, AC010270, AC008434, AC010270, AC022223
S/G/Y/R/B/O NT_007022AC022223851756141RH673795383.92    1AC008434, AC010270, AC008434, AC010270, AC022223
S/G/Y/R/B/O NT_007022AC008907838424891CHLC.GATA3H06    5316.702AC008850, AC008865, AC008908, AC008850, AC008865, AC008905, AC008907, AC008908
S/G/Y/R/B/O NT_007022AC008907838501041RH115485421.55    2AC008850, AC008865, AC008850, AC008865, AC008907
S/G/Y/R/B/O NT_007022AC008907859144701RH984405416.97    2AC008850, AC008865, AC008908, AC008850, AC008865, AC008907, AC008908
S/G/Y/R/B/O NT_007022AC008907859155901RH939505421.55    2AC008850, AC008865, AC008908, AC008850, AC008865, AC008907, AC008908
S/G/Y/R/B/O NT_007022AC008907859165661RH602145421.55  5316.703AC008850, AC008865, AC008908, AC027340, AC008850, AC008865, AC008907, AC008908, AC027340
S/G/Y/R/B/O NT_007022AC008907859224391RH598205421.55  5316.702AC008850, AC008865, AC008908, AC008850, AC008865, AC008907, AC008908
S/G/Y/R/B/O NT_007022AC008907859400041RH37903  53523.00  2AC008850, AC008865, AC008908, AC008850, AC008865, AC008907, AC008908
S/G/Y/R/B/O NT_007022AC008907860051321RH1798  53509.00  2AC008850, AC008908, AC008850, AC008907, AC008908, AC022114
S/G/Y/R/B/O NT_007022AC008907860067691RH1024135419.82    2AC008850, AC008908, AC008850, AC008907, AC008908, AC022114
S/G/Y/R/B/O NT_007022AC008907860077871RH596745415.45  5310.002AC008850, AC008908, AC008850, AC008907, AC008908, AC022114
S/G/Y/R/B/O NT_007022AC114969839228431          
S/G/Y/R/B/O NT_007022AC022931839334221          
S/G/Y/R/B/O NT_007022AC023549839609521          
S/G/Y/R/B/O NT_007022AC106824840509241          
S/G/Y/R/B/O NT_007022AC010628840934652          
S/G/Y/R/B/O NT_007022AC010598841365423RH30917  53033.00  1AC010628, AC106824, AC010598, AC010628, AC106824
S/G/Y/R/B/O NT_007022AC010598841725743CHLC.GATA5E10    5283.901 AC010598
S/G/Y/R/B/O NT_007022AC010598842312883RH787255387.48    1 AC010598
S/G/Y/R/B/O NT_007022AC010598842484223RH767485386.08    1 AC005406, AC010598
S/G/Y/R/B/O NT_007022AC010598842490273RH660505390.95    1 AC005406, AC010598
S/G/Y/R/B/O NT_007022AC010598842509733RH411495387.58    1 AC005406, AC010598
S/G/Y/R/B/O NT_007022AC010598842512063RH603575389.98  5283.901 AC005406, AC010598
S/G/Y/R/B/O NT_007022AC010598842512223RH713205387.38    2AL627071, AC005406, AC010598, AL627071
S/G/Y/R/B/O NT_007022AC010598843020773RH61725390.01  5289.001AC026698, AC005406, AC010598, AC026698
S/G/Y/R/B/O NT_007022AC010598843020773RH30306  53051.00  1AC026698, AC005406, AC010598, AC026698
S/G/Y/R/B/O NT_007022AC010598843061043RH271315390.91    1AC026698, AC005406, AC010598, AC026698
S/G/Y/R/B/O NT_007022AC010598843071813RH602585389.08  5285.501AC026698, AC005406, AC010598, AC026698
S/G/Y/R/B/O NT_007022AC010598843072343RH597725386.17  5284.101AC026698, AC005406, AC010598, AC026698
S/G/Y/R/B/O NT_007022AC026698843523043D5S620    5283.901 AC005406, AC026698
S/G/Y/R/B/O NT_007022AC026698843523043RH667  53021.00  1 AC005406, AC026698
S/G/Y/R/B/O NT_007022AC091861844715073          
S/G/Y/R/B/O NT_007022AC026782846342483RH8041  53021.00  1 AC026782
S/G/Y/R/B/O NT_007022AC026782846821693RH424525387.68  5287.101 AC026782
S/G/Y/R/B/O NT_007022AC008885846909003          
S/G/Y/R/B/O NT_007022AC108174848945583RH483345389.90    1AC027338, AC027327, AC027338, AC090073, AC108174
S/G/Y/R/B/O NT_007022AC027338849007153          
S/G/Y/R/B/O NT_007022AC104118850273663RH602995387.48  5283.901AC022416, AC010586, AC022416, AC104118
S/G/Y/R/B/O NT_007022AC104118850274163RH461465389.70    1AC022416, AC010586, AC022416, AC104118
S/G/Y/R/B/O NT_007022AC104118850280183RH168475379.18    1AC022416, AC010586, AC022416, AC104118
S/G/Y/R/B/O NT_007022AC022416850314103RH599035387.48  5283.901 AC022416
S/G/Y/R/B/O NT_007022AC022416850314423RH410725387.48    1 AC022416
S/G/Y/R/B/O NT_007022AC022416850315023RH264455387.48    1 AC022416
S/G/Y/R/B/O NT_007022AC094085851460291          
S/G/Y/R/B/O NT_007022AC099510851548031          
S/G/Y/R/B/O NT_007022AC010270852053652          
S/G/Y/R/B/O NT_007022AC034211852087383          


  NT_007022 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007022AC016568853793353RH662385387.48    1 AC016568, AC023134, AC025439
S/G/Y/R/B/O NT_007022AC026696856061753RH452905387.48    1AC008908, AC020921, AC007554, AC008908, AC020921, AC026696
S/G/Y/R/B/O NT_007022AC026696856066743RH694115387.48    1AC008908, AC008908
S/G/Y/R/B/O NT_007022AC026696856067593RH603655387.48  5283.901AC008908, AC020921, AC007554, AC008908, AC020921, AC026696
S/G/Y/R/B/O NT_007022AC026696856068073RH358595390.95    1AC008908, AC020921, AC007554, AC008908, AC020921, AC026696
S/G/Y/R/B/O NT_007022AC026696856069233RH749425389.90    1AC008908, AC020921, AC007554, AC008908, AC020921, AC026696
S/G/Y/R/B/O NT_007022AC026696856077153RH175735387.88    1AC008908, AC020921, AC008908, AC020921, AC026696
S/G/Y/R/B/O NT_007022AC020921856303143CHLC.GATA69H12    5281.601AC020899, AC007554, AC020899, AC020921
S/G/Y/R/B/O NT_007022AC020899856639943RH411325390.32    1 AC007554, AC020899
S/G/Y/R/B/O NT_007022AC020899856658403RH922235391.52    1 AC007554, AC020899
S/G/Y/R/B/O NT_007022AC020899856670273RH7860  53082.00  1 AC007554, AC020899
S/G/Y/R/B/O NT_007022AC020899856811773AFMB298ZG1    5287.101 AC007554, AC020899
S/G/Y/R/B/O NT_007022AC093286857934221          
S/G/Y/R/B/O NT_007022AC008908859698842RH601815413.64  5333.102AC008850, AC008907, AC008850, AC008907, AC008908
S/G/Y/R/B/O NT_007022AC008908860260302RH1023925417.89    3AC008850, AC009126, AC097313, AC008850, AC008908, AC009073, AC009126, AC022114, AC097313
S/G/Y/R/B/O NT_007022AC008908860513012RH1023375419.82    2AC009126, AC008908, AC009073, AC009126, AC022114
S/G/Y/R/B/O NT_007022AC022493862353593RH601015389.1853148.005284.101 AC008557, AC016565, AC022493
S/G/Y/R/B/O NT_007022AC022493862774213RH161995387.58    1 AC008557, AC016565, AC022493
S/G/Y/R/B/O NT_007022AC022493862790773RH1029875387.58    1AC008518, AC008518, AC008557, AC016565, AC022493
S/G/Y/R/B/O NT_007022AC008518863382353RH603615387.48  5283.901 AC008515
S/G/Y/R/B/O NT_007022AC026427865000971RH464845389.80    1AC020901, AC016684, AC020901, AC026427
S/G/Y/R/B/O NT_007022AC020901866150823RH764865380.01    1 AC020901
S/G/Y/R/B/O NT_007022AC020901866269893RH670595387.88    1AC026436, AC020901, AC026436
S/G/Y/R/B/O NT_007022AC020901866280723RH169275387.38    2AC026436, AC097313, AC020901, AC026436, AC097313
S/G/Y/R/B/O NT_007022AC020901866281463RH599215387.58  5283.902AC026436, AC097313, AC020901, AC026436, AC097313
S/G/Y/R/B/O NT_007022AC020901866289743RH599965385.16  5285.501AC026436, AC020901, AC026436
S/G/Y/R/B/O NT_007022AC020901866291053RH14188  52945.00  1AC026436, AC020901, AC026436
S/G/Y/R/B/O NT_007022AC020901866330613RH691705387.58    1AC026436, AC020901, AC026436, M72981
S/G/Y/R/B/O NT_007022AC020901866350063RH1039635387.48    1AC026436, AC026436
S/G/Y/R/B/O NT_007022AC020901866367533RH602985384.53  5282.001AC026436, AC020901, AC026436
S/G/Y/R/B/O NT_007022AC020901866367533RH38121  52525.00  1AC026436, AC020901, AC026436
S/G/Y/R/B/O NT_007022AC026436866652733RH602915387.68  5284.101 AC026436
S/G/Y/R/B/O NT_007022AC026436866923903RH752245379.13    1AC008411, AC008411, AC026436
S/G/Y/R/B/O NT_007022AC026436867120453RH598915387.48  5283.901AC008411, AC008411, AC026436
S/G/Y/R/B/O NT_007022AC008411867292403RH444475390.43    1 AC008411
S/G/Y/R/B/O NT_007022AC008411867463953RH673645387.58    1 AC008411
S/G/Y/R/B/O NT_007022AC010600868038382RH454725387.48    1 AC010600
S/G/Y/R/B/O NT_007022AC010600868172042RH938115387.48    1 AC010600
S/G/Y/R/B/O NT_007022AC010600868203852RH33690  52531.00  1 AC010600
S/G/Y/R/B/O NT_007022AC010600868214412RH364165389.00    1 AC010600
S/G/Y/R/B/O NT_007022AC093207870176591RH603645389.70  5287.101AC012205, AC093273, AC012205, AC093207, AC093273
S/G/Y/R/B/O NT_007022AC093207870177081RH676065387.38    1AC012205, AC093273, AC012205, AC093207, AC093273
S/G/Y/R/B/O NT_007022AC093207870177391RH410875387.38    1AC093273, AC093207, AC093273
S/G/Y/R/B/O NT_007022AC026419869208522          
S/G/Y/R/B/O NT_007022AC016562872160111WI-4719    5287.501AC012205, AC026726, AC012205, AC016562, AC026726
S/G/Y/R/B/O NT_007022AC012205871045631RH1038425384.74    1AC016562, AC012205, AC016562
S/G/Y/R/B/O NT_007022AC093273871581831          
S/G/Y/R/B/O NT_007022AC026726873131713RH365465385.36    1 AC026726
S/G/Y/R/B/O NT_007022 - RH284975391.52    1AC008430, AC109496, AC008430, AC010623, AC109496
S/G/Y/R/B/O NT_007022 - RH30319  53038.00  1AC027321, AC027333, AC027321, AC027333


  NT_007022 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007022 - CHLC.GCT10A04    5283.701AC010595, AC010595
S/G/Y/R/B/O NT_007022 - RH412285391.78    0  
S/G/Y/R/B/O NT_007022 - RH30919  53115.00  1AC008430, AC008430, AC010623
S/G/Y/R/B/O NT_007022 - CHLC.GATA23G12    5283.702AC012641, AC026414, AC012641, AC026414
S/G/Y/R/B/O NT_007022 - RH487975391.52    1AC008430, AC109496, AC008430, AC010623, AC109496
S/G/Y/R/B/O NT_007022 - RH8792  53120.00  1AC109496, AC109496
S/G/Y/R/B/O NT_007022 - CHLC.GATA91E02    5287.100  
S/G/Y/R/B/O NT_007022 - RH602765383.30  5289.301AC008434, AC008434, AC104467
S/G/Y/R/B/O NT_007022 - RH699915392.35    1AC018754, AC018754
S/G/Y/R/B/O NT_007022 - RH782825391.52    1AC008430, AC109496, AC008430, AC010623, AC109496