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  Chromosome 5 - RH Maps - Single Contig
 

Chromosome 5 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006899
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006899AC0137701170142951          
S/G/Y/R/B/O NT_006899AC1094731171257873RH111455469.61    1AC013770, AC013770, AC079463, AC109473, AC113356
S/G/Y/R/B/O NT_006899AC1094731171338343RH657465470.24    1AC008575, AC013770, AC008575, AC013770, AC079463, AC109473, AC113356
S/G/Y/R/B/O NT_006899AC1094731171430363RH668705469.30    2AC008575, AC097313, AC008575, AC079463, AC097313, AC109473, AC113356
S/G/Y/R/B/O NT_006899AC0085751171960423RH486285470.64    1 AC008461, AC008575, AC079463, AC113356
S/G/Y/R/B/O NT_006899AC0085751172008533RH660455470.13    1 AC008575, AC079463
S/G/Y/R/B/O NT_006899AC0085751172135913RH38103  54491.00  1 AC008461, AC008575, AC113356, AF127034, AF297218
S/G/Y/R/B/O NT_006899AC0085751172168793RH603885470.54  5378.701 AC008461, AC008575, AC113356, AF297219
S/G/Y/R/B/O NT_006899AC0085751172171283RH411965470.64    1 AC008461, AC008575, AC113356, AF297219
S/G/Y/R/B/O NT_006899AC0085751172287153RH603945469.72  5374.901 AC008461, AC008575, AC113356
S/G/Y/R/B/O NT_006899AC0085751172315383RH32199  54517.00  1 AC008575
S/G/Y/R/B/O NT_006899AC0085751172330343RH940675470.64    1 AC008461, AC008575, AC113356
S/G/Y/R/B/O NT_006899AC0085751172548953RH8313  54517.00  1 AC113356
S/G/Y/R/B/O NT_006899AC0085751172637423RH600335470.13  5376.301AC008536, AC008461, AC008536, AC008575
S/G/Y/R/B/O NT_006899AC0085751172637443RH600875469.75  5375.001AC008536, AC008461, AC008536, AC008575
S/G/Y/R/B/O NT_006899AC0085751172657523RH2088  54500.00  1AC008536, AC008461, AC008536, AC008575
S/G/Y/R/B/O NT_006899AC0085361172748223RH1783  54523.00  1 AC008451, AC008461, AC008536
S/G/Y/R/B/O NT_006899AC0085361172802863RH713275469.75    1 AC008451, AC008461, AC008536, U51224
S/G/Y/R/B/O NT_006899AC0085361172962483RH124095469.75    2AC010481, AC008451, AC008461, AC008536, AC009038, AC010481
S/G/Y/R/B/O NT_006899AC0085361173897933RH676665471.95    1 AC008536
S/G/Y/R/B/O NT_006899AC0085361174036413RH939985471.95    1 AC008536
S/G/Y/R/B/O NT_006899AC0085361174081183RH599715471.95  5377.201 AC008536
S/G/Y/R/B/O NT_006899AC0085361174104273RH943045471.95    2AC097313, AC106750, AC008536, AC097313, AC106750
S/G/Y/R/B/O NT_006899AC0085361174131893RH604275471.95  5379.001AC106750, AC008536, AC106750
S/G/Y/R/B/O NT_006899AC0085361174132073RH411235471.95    1AC106750, AC008536, AC106750
S/G/Y/R/B/O NT_006899AC0085361174143233RH14049  54500.00  1AC106750, AC008536, AC106750
S/G/Y/R/B/O NT_006899AC0085361174148823RH693795471.95    1AC106750, AC008536, AC106750
S/G/Y/R/B/O NT_006899AC1067501174537872RH411515471.95    1 AC106750
S/G/Y/R/B/O NT_006899AC0104811174671011          
S/G/Y/R/B/O NT_006899AC0159751175914601          
S/G/Y/R/B/O NT_006899AC0841791176166821          
S/G/Y/R/B/O NT_006899AC0133431185452151RH63308X157.21  X84.502AC084179, AL662886, AC013343, AC084179, AL662886
S/G/Y/R/B/O NT_006899AC0133431185708121RH47573X157.21    1 AC013343
S/G/Y/R/B/O NT_006899AC0794651178460322RH136505471.9554511.00  1 AC025185, AC067893, AC079465
S/G/Y/R/B/O NT_006899AC0104311178924983          
S/G/Y/R/B/O NT_006899AC0932081180474943RH410915471.95    1 AC093208
S/G/Y/R/B/O NT_006899AC0103891181020283RH666545472.05    1 AC010389
S/G/Y/R/B/O NT_006899AC0103891181030903RH603255472.05  5378.001 AC010389
S/G/Y/R/B/O NT_006899AC0932401181947793          
S/G/Y/R/B/O NT_006899AC0935281182798983          
S/G/Y/R/B/O NT_006899AC0940991183960621          
S/G/Y/R/B/O NT_006899AC1067891185092441          
S/G/Y/R/B/O NT_006899AC0239521185096711          
S/G/Y/R/B/O NT_006899AC0229551185259871          
S/G/Y/R/B/O NT_006899AC0841351188029791RH30296  54551.00  1 AC084135
S/G/Y/R/B/O NT_006899AC0841351188388281RH56740287.59  2132.102AC013459, AC013459
S/G/Y/R/B/O NT_006899AC0940881186970813          
S/G/Y/R/B/O NT_006899AC1133641188507291          
S/G/Y/R/B/O NT_006899AC0935271188510483          
S/G/Y/R/B/O NT_006899AC0257611190420833          


  NT_006899 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006899AC0214151190611931          
S/G/Y/R/B/O NT_006899AC1094821190673212          
S/G/Y/R/B/O NT_006899AC0102301191376783          
S/G/Y/R/B/O NT_006899AC0686601192566823          
S/G/Y/R/B/O NT_006899AC0086211194064583          
S/G/Y/R/B/O NT_006899AC0084921194297573          
S/G/Y/R/B/O NT_006899AC0994841194743132          
S/G/Y/R/B/O NT_006899AC0223211195639111          
S/G/Y/R/B/O NT_006899AC0190301195987971          
S/G/Y/R/B/O NT_006899 - RH713285470.44    1AC004106, AC096510, AC004106, AC096510
S/G/Y/R/B/O NT_006899 - RH13898  54028.00  1 U80946
S/G/Y/R/B/O NT_006899 - RH14529  54038.00  1AC005215, AC005215, AC010489, AC016560
S/G/Y/R/B/O NT_006899 - RH32376  53983.00  1AC008533, AC011371, AC012630, AC008533, AC011371, AC012630
S/G/Y/R/B/O NT_006899 - RH33469  54033.00  1AC008533, AC011371, AC012630, AC008533, AC011371, AC012630
S/G/Y/R/B/O NT_006899 - RH42802  54441.00  1AC022108, AC012611, AC022108, AC026229, AC109995
S/G/Y/R/B/O NT_006899 - RH473  54439.00  1AC008782, AC010395, AC008782, AC010395, AC012610
S/G/Y/R/B/O NT_006899 - RH8301  54443.00  1AC008650, AC008595, AC008650, AC016608, AC018756, AC020918
S/G/Y/R/B/O NT_006899 - RH8622  54028.00  1AC004782, AC012634, AC004782, AC012634
S/G/Y/R/B/O NT_006899 - RH8657  53989.00  1AC005618, AC005618, AC008579, AF349038
S/G/Y/R/B/O NT_006899 - RH8934  53977.00  1AC005753, AC094107, AC005753, AC094107
S/G/Y/R/B/O NT_006899 - RH9034  54038.00  1AC005370, AC005370, AC010489, AC016560, X59065