Chromosome 5 - RH Maps - Single Contig

Chromosome 5 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033086	NT_023089	NT_006576	NT_033103	NT_029977	NT_016779	NT_033104	NT_023110
NT_033119	NT_023097	NT_023084	NT_023115	NT_023315	NT_033112	NT_006547	NT_023162
NT_006577	NT_023114	NT_023216	NT_023124	NT_026281	NT_023085	NT_033113	NT_033110
NT_006679	NT_023195	NT_033085	NT_006702	NT_023098	NT_028188	NT_031794	NT_023102
NT_023081	NT_006693	NT_016864	NT_033115	NT_033092	NT_006665	NT_006497	NT_006431
NT_033093	NT_006790	NT_006713	NT_026283	NT_023083	NT_033077	NT_033111	NT_033079
NT_007022	NT_006540	NT_030680	NT_029973	NT_028179	NT_033118	NT_006731	NT_023148
NT_023290	NT_033094	NT_033116	NT_006654	NT_033095	NT_033098	NT_033082	NT_033096
NT_023091	NT_006789	NT_033108	NT_006899	NT_006780	NT_030685	NT_025721	NT_033106
NT_025702	NT_023192	NT_029295	NT_033097	NT_016755	NT_029975	NT_033083	NT_033084
NT_023238	NT_033105	NT_007072	NT_033091	NT_016714	NT_006859	NT_006489	NT_029289
NT_033078	NT_023269	NT_023248	NT_030691	NT_006788	NT_030698	NT_033117	NT_033080
NT_023133	NT_006907	NT_023132	NT_033089	NT_006725	NT_023093	NT_006802	NT_006932
NT_006519

NT_029973

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_029973	AC010410	89628350	3	RH74973	5	397.50					1		AC010410
S/G/Y/R/B/O	NT_029973	AC035142	89645007	3	RH45809	5	397.50					1		AC035142
S/G/Y/R/B/O	NT_029973	AC035142	89674809	3	RH28569	5	403.15					1		AC035142
S/G/Y/R/B/O	NT_029973	AC035142	89677634	3	RH69245	5	397.57					1		AC035142
S/G/Y/R/B/O	NT_029973	AC035142	89693376	3	RH15818	5	397.70					1	AC018754,	AC018754, AC035142
S/G/Y/R/B/O	NT_029973	AC035142	89698287	3	RH104298	5	397.50					1	AC018754,	AC018754, AC035142
S/G/Y/R/B/O	NT_029973	AC018754	89728412	3	RH93053	5	397.50					1		AC018754
S/G/Y/R/B/O	NT_029973	AC018754	89732638	3	RH41130	5	397.40					1		AC010394, AC018754
S/G/Y/R/B/O	NT_029973	AC018754	89737170	3	RH60001	5	397.60			5	293.20	1		AC018754
S/G/Y/R/B/O	NT_029973	AC018754	89740098	3	RH103694	5	397.40					1		AC010394, AC018754
S/G/Y/R/B/O	NT_029973	AC018754	89743502	3	RH60156	5	403.05			5	299.00	1		AC018754
S/G/Y/R/B/O	NT_029973	AC018754	89743629	3	RH78240	5	397.50					1
S/G/Y/R/B/O	NT_029973	AC018754	89744789	3	RH2059			5	3243.00			1		AC018754
S/G/Y/R/B/O	NT_029973	AC018754	89745366	3	RH69527	5	392.41					1		AC018754
S/G/Y/R/B/O	NT_029973	AC018754	89745482	3	RH59980	5	397.50			5	291.90	1		AC018754
S/G/Y/R/B/O	NT_029973	AC018754	89745646	3	RH41116	5	397.50					1		AC018754
S/G/Y/R/B/O	NT_029973	AC018754	89746590	3	RH69991	5	392.35					1		AC018754
S/G/Y/R/B/O	NT_029973	AC018754	89794577	3	RH48781	5	397.70					1	AC025245,	AC018754, AC025245
S/G/Y/R/B/O	NT_029973	AC015452	89862955	1
S/G/Y/R/B/O	NT_029973	AC025245	89887055	1
S/G/Y/R/B/O	NT_029973	AC091877	89942866	1
S/G/Y/R/B/O	NT_029973	AC008939	89987672	2
S/G/Y/R/B/O	NT_029973	AC074216	90012485	1
S/G/Y/R/B/O	NT_029973	AC021141	90021650	1
S/G/Y/R/B/O	NT_029973	AC020930	90152933	3	WI-9885					5	294.10	1	AC008839, AC021141, AC074216,	AC008839, AC020930, AC021141, AC074216
S/G/Y/R/B/O	NT_029973	AC008839	90179262	3
S/G/Y/R/B/O	NT_029973	AC116335	90236355	3
S/G/Y/R/B/O	NT_029973	AC093241	90284895	2
S/G/Y/R/B/O	NT_029973	AC114971	90314789	3
S/G/Y/R/B/O	NT_029973	AC013656	90434139	1
S/G/Y/R/B/O	NT_029973	AC010243	90447013	2
S/G/Y/R/B/O	NT_029973	AC010897	90535439	1
S/G/Y/R/B/O	NT_029973	AC016555	90576474	3	WI-4896					5	294.10	1	AC010243, AC010897, AC013656,	AC010243, AC010897, AC013656, AC016555
S/G/Y/R/B/O	NT_029973	AC016555	90637367	3	RH59848	5	401.13			5	295.80	1	AC010897,	AC010897, AC013617, AC016555
S/G/Y/R/B/O	NT_029973	AC114978	90694975	3
S/G/Y/R/B/O	NT_029973	AC091826	90883186	1	RH92097	5	399.73					1		AC091826
S/G/Y/R/B/O	NT_029973	AC008487	90837642	1	WI-4673					5	395.20	2	AC008568,	AC008487, AC008568, AC008876
S/G/Y/R/B/O	NT_029973	AC094090	90876565	1
S/G/Y/R/B/O	NT_029973	AC008526	90901935	3	RH60002	5	398.43			5	292.20	1	AC091826,	AC008526, AC091826
S/G/Y/R/B/O	NT_029973	AC008526	90908402	3	CHLC.GCT5E05					5	296.60	1	AC091826,	AC008526, AC091826
S/G/Y/R/B/O	NT_029973	AC012604	91065664	3
S/G/Y/R/B/O	NT_029973	AC026701	91085341	3	RH26995	5	401.24					1	AC008487, AC094090,	AC008487, AC026701, AC094090
S/G/Y/R/B/O	NT_029973	AC026701	91099045	3	RH59782	5	402.95			5	296.50	1	AC008487, AC008525, AC094090,	AC008487, AC008525, AC026701, AC094090
S/G/Y/R/B/O	NT_029973	AC026701	91099079	3	RH66334	5	402.95					1	AC008487, AC008525, AC094090,	AC008487, AC008525, AC026701, AC094090
S/G/Y/R/B/O	NT_029973	AC026701	91102195	3	AFMA224WE5					5	295.00	1	AC008525,	AC008525
S/G/Y/R/B/O	NT_029973	AC026701	91110733	3	RH91154	5	402.95					1	AC008487, AC008525, AC094090,	AC008487, AC008525, AC026701, AC094090
S/G/Y/R/B/O	NT_029973	AC026701	91110742	3	RH9909	5	401.24					1	AC008487, AC008525, AC094090,	AC008487, AC008525, AC026701, AC094090
S/G/Y/R/B/O	NT_029973	AC026701	91110825	3	RH17072	5	401.03					1	AC008487, AC008525, AC094090,	AC008487, AC008525, AC026701, AC094090
S/G/Y/R/B/O	NT_029973	AC026701	91115795	3	RH46403	5	402.95					1	AC008487, AC008525, AC094090,	AC008487, AC008525, AC026701, AC094090
S/G/Y/R/B/O	NT_029973	AC026701	91128144	3	RH59952	5	402.95			5	295.30	1	AC008487, AC008525, AC094090,	AC008487, AC008525, AC026701, AC094090

NT_029973 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_029973	AC026701	91136037	3	SGC35211			5	296.60	1	AC008487, AC008525, AC094090,	AC008487, AC008525, AC026701, AC094090
S/G/Y/R/B/O	NT_029973	AC026701	91136037	3	RH60080	5	408.64			1	AC008487, AC008525, AC094090,	AC008487, AC008525, AC026701, AC094090
S/G/Y/R/B/O	NT_029973	AC026701	91136115	3	RH16385	5	401.03			1	AC008487, AC008525,	AC008487, AC008525, AC026701
S/G/Y/R/B/O	NT_029973	AC026701	91137213	3	RH36679	5	402.95			1	AC008487, AC008525, AC094090,	AC008487, AC008525, AC026701, AC044843, AC094090
S/G/Y/R/B/O	NT_029973	AC026701	91139283	3	RH59760	5	402.95	5	296.60	1	AC008487, AC008525, AC094090,	AC008487, AC008525, AC026701, AC044843, AC094090
S/G/Y/R/B/O	NT_029973	AC026701	91139745	3	RH59775	5	400.83	5	292.60	1	AC008487, AC008525, AC094090,	AC008487, AC008525, AC026701, AC044843, AC094090
S/G/Y/R/B/O	NT_029973	AC008525	91187692	3	RH60044	5	400.93	5	293.20	1	AC094090,	AC008525, AC016547, AC044843, AC094090, AC116339
S/G/Y/R/B/O	NT_029973	AC008835	91244363	3	RH93636	5	402.95			1	AC019295,	AC008835, AC016547, AC019295, AC044843, AC083781, AC116339
S/G/Y/R/B/O	NT_029973	AC008835	91247474	3	WI-4629			5	296.50	1	AC019295,	AC008835, AC016547, AC019295, AC044843, AC083781, AC116339
S/G/Y/R/B/O	NT_029973	AC008835	91253911	3	WI-5709			5	296.50	1	AC019295,	AC008835, AC016547, AC019295, AC044843, AC083781, AC116339
S/G/Y/R/B/O	NT_029973	AC008835	91266640	3	RH103877	5	402.95			1	AC019295,	AC008835, AC016547, AC019295, AC044843, AC083781, AC116339
S/G/Y/R/B/O	NT_029973	AC008835	91300211	3	RH28495	5	402.95			1	AC019295,	AC008835, AC019295, AC083781, AC116339
S/G/Y/R/B/O	NT_029973	AC019295	91340195	1
S/G/Y/R/B/O	NT_029973	AC010259	91523152	3	CHLC.GATA83C12			5	295.00	1	AC010596,	AC009990, AC010259, AC010596
S/G/Y/R/B/O	NT_029973	AC010596	91537344	3
S/G/Y/R/B/O	NT_029973		-		D5S401			5	295.00	1		AC008504