Home    Genome Browser    BLAT Search    Help
  Chromosome 5 - RH Maps - Single Contig
 

Chromosome 5 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_016755
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_016755AC0106111266481181          
S/G/Y/R/B/O NT_016755AC0227121266534841          
S/G/Y/R/B/O NT_016755AC1067571266774561          
S/G/Y/R/B/O NT_016755AC0214631307048331GCT10F04    5396.701 AC021463
S/G/Y/R/B/O NT_016755AC0108021267012531          
S/G/Y/R/B/O NT_016755AC1143111267177671          
S/G/Y/R/B/O NT_016755AC0086931267640723          
S/G/Y/R/B/O NT_016755AC0267201268705313RH1042115493.43    1AC008693, AC008693, AC026720
S/G/Y/R/B/O NT_016755AC0085801269942032          
S/G/Y/R/B/O NT_016755AC0210761270267103RH599775499.23  5399.901AC106757, AC021076, AC106757
S/G/Y/R/B/O NT_016755AC0224491271057313          
S/G/Y/R/B/O NT_016755AC0165561272492233          
S/G/Y/R/B/O NT_016755AC0254651273540192RH680635490.97    1 AC025465
S/G/Y/R/B/O NT_016755AC0254651273540912RH935755500.25    1 AC025465
S/G/Y/R/B/O NT_016755AC0104071273933832          
S/G/Y/R/B/O NT_016755AC1121961274841581          
S/G/Y/R/B/O NT_016755AC1133571298767011RH697605492.77    1AC112196, AC113398, AC112196, AC113357, AC113398
S/G/Y/R/B/O NT_016755AC0085121275073173          
S/G/Y/R/B/O NT_016755AC0210801275230173          
S/G/Y/R/B/O NT_016755AC0267731276227053WI-4072    5398.201AC008580, AC021080, AC008580, AC021080, AC026409, AC026773
S/G/Y/R/B/O NT_016755AC0085411277472223RH361745493.48    2AC026773, AL451051, AC008541, AC022117, AC026773, AL451051
S/G/Y/R/B/O NT_016755AC0085411277483613RH919865491.17    1AC026773, AC008541, AC022117, AC026773
S/G/Y/R/B/O NT_016755AC0264221278479913RH8950  54822.00  1 AC026422, AC106767, AC106770
S/G/Y/R/B/O NT_016755AC0264221278481203RH369115500.15    1 AC026422, AC106767, AC106770
S/G/Y/R/B/O NT_016755AC0264221278548063RH1039805493.48    1 AC026422, AC106767, AC106770
S/G/Y/R/B/O NT_016755AC1067921278708503          
S/G/Y/R/B/O NT_016755AC0103691280176623RH929105491.17    1 AC010369, AC010396
S/G/Y/R/B/O NT_016755AC0103691280184733RH988595491.17    1 AC010369, AC010396
S/G/Y/R/B/O NT_016755AC0103691280186833RH411045490.97    1 AC010369, AC010396
S/G/Y/R/B/O NT_016755AC0104931280728103          
S/G/Y/R/B/O NT_016755AC0085481281666702RH152215491.07  5396.701AC023974, AC008548, AC023974
S/G/Y/R/B/O NT_016755AC0085481281666702RH713  54807.00  1AC023974, AC008548, AC023974
S/G/Y/R/B/O NT_016755AC0085481281673492AFMB352XH5    5398.201 AC008548
S/G/Y/R/B/O NT_016755AC0085481281696782RH922265491.27    1AC008606, AC023974, AC023974, AC008548, AC008606, AC023974, AC023974
S/G/Y/R/B/O NT_016755AC0086061281971562          
S/G/Y/R/B/O NT_016755AC0239741282018611          
S/G/Y/R/B/O NT_016755AC1067861282342203          
S/G/Y/R/B/O NT_016755AC0221161283403523RH602485491.07  5396.701AC106786, AC012424, AC022116, AC106786, AC106812
S/G/Y/R/B/O NT_016755AC0221161283441493RH659605490.97    1 AC012424, AC022116, AC106812
S/G/Y/R/B/O NT_016755AC0221161283557013RH656995493.18    1 AC106812
S/G/Y/R/B/O NT_016755AC0086691285362613RH461075499.44    1 AC008458, AC008669
S/G/Y/R/B/O NT_016755AC0086691285749733RH693535490.97    1AC021463, AC008669, AC021463
S/G/Y/R/B/O NT_016755AC0103721286304843CHLC.GATA5G04.350    5401.401 AC008624, AC010372, AC094102
S/G/Y/R/B/O NT_016755AC0105871287405183          
S/G/Y/R/B/O NT_016755AC0267231288955243CHLC.GATA46H11    5401.201AC008433, AC022712, AC008433, AC022712, AC026723, AC093257
S/G/Y/R/B/O NT_016755AC0084331289077503          
S/G/Y/R/B/O NT_016755AC0932451289856003          
S/G/Y/R/B/O NT_016755AC0102351290539533RH266405492.47    2AC022712, AC010235, AC022712, AC092273
S/G/Y/R/B/O NT_016755AC0102351292349783WI-5458    5407.101AC008546, AC008546, AC010235
S/G/Y/R/B/O NT_016755AC0085461292352323          


  NT_016755 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_016755AC0935351293401323RH688605510.94    1 AC093288, AC093535
S/G/Y/R/B/O NT_016755AC0935351293591773RH697335509.68    1 AC093535
S/G/Y/R/B/O NT_016755AC0935351293748533RH600235510.46  5409.401AC023196, AC099513, AC023196, AC093535, AC099513
S/G/Y/R/B/O NT_016755AC0935351293752253RH469475504.64    1AC023196, AC099513, AC023196, AC093535, AC099513, AC104124
S/G/Y/R/B/O NT_016755AC0935351294232083RH783575504.51    1AC023196, AC099513, AC023196, AC099513
S/G/Y/R/B/O NT_016755AC0935351294245373RH8866  54951.00  1AC023196, AC099513, AC023196, AC093535, AC099513
S/G/Y/R/B/O NT_016755AC0935351294254023RH653145499.85    1AC023196, AC099513, AC023196, AC099513
S/G/Y/R/B/O NT_016755AC0935351294260643RH600495370.82  5270.001AC023196, AC099513, AC023196, AC093535, AC099513
S/G/Y/R/B/O NT_016755AC0935351294261513RH369735505.63    1AC023196, AC099513, AC023196, AC093535, AC099513
S/G/Y/R/B/O NT_016755AC0995131294457743RH602825509.72  5409.401 AC099513
S/G/Y/R/B/O NT_016755AC0995131295083853RH1029045504.30    1AC023196, AC023196, AC099513
S/G/Y/R/B/O NT_016755AC0995131295173413RH983765509.72    2AC023196, AC093284, AC023196, AC093284, AC093299, AC099513
S/G/Y/R/B/O NT_016755AC0231961295299471          
S/G/Y/R/B/O NT_016755AC0932421295349121          
S/G/Y/R/B/O NT_016755AC0935211295425662          
S/G/Y/R/B/O NT_016755AC0166761295598551          
S/G/Y/R/B/O NT_016755AC1094641295634001          
S/G/Y/R/B/O NT_016755AC0932201296132011          
S/G/Y/R/B/O NT_016755AC1094501296618942RH921355500.25    1AC016676, AC093220, AC109464, AC016676, AC093220, AC109450, AC109464
S/G/Y/R/B/O NT_016755AC1094501296812822WI-4917    5401.001AC016676, AC093220, AC109464, AC016676, AC093220, AC109450, AC109464
S/G/Y/R/B/O NT_016755AC1133981298041622WI-13632    5401.201AC109450, AC112196, AC109450, AC112196, AC113398
S/G/Y/R/B/O NT_016755AC1133981298041622RH602325500.25    1AC109450, AC112196, AC109450, AC112196, AC113398
S/G/Y/R/B/O NT_016755AC0102551300782013RH364465490.97    1 AC010255
S/G/Y/R/B/O NT_016755AC0102551300782103RH672975490.87    1 AC010255
S/G/Y/R/B/O NT_016755AC0102551300849973RH411525491.96    1AC010611, AC010255, AC010611
S/G/Y/R/B/O NT_016755AC0102551300884603RH600295490.97  5395.201AC010611, AC010255, AC010611
S/G/Y/R/B/O NT_016755AC0102551301138043RH667025497.93    1 AC010255, AC090062, AF270645, U22384
S/G/Y/R/B/O NT_016755AC0102551301150453RH37815  54741.00  1 AC090062, AF270645, U22384
S/G/Y/R/B/O NT_016755AC0102551301150463RH683255490.97    1 AC010255, AC090062, AF270645, U22384
S/G/Y/R/B/O NT_016755AC0102551301152263RH9055  54727.00  1 AC010255, AC090062, AF270645, U22384
S/G/Y/R/B/O NT_016755AC0102551301216983RH134665496.0954736.00  1 AC010255, AC090062, AF270645
S/G/Y/R/B/O NT_016755AC0102551301281293RH478355490.97    1AC010611, AC010255, AC010611, AC090062, AF270645
S/G/Y/R/B/O NT_016755AC0102551301615103RH1038145490.97    1 AC010255, AC090062
S/G/Y/R/B/O NT_016755AC0102551302302483RH985945490.97    1AC113349, AC010255, AC113349
S/G/Y/R/B/O NT_016755AC0102551302407703WI-6079    5396.701AC008436, AC113349, AC008436, AC010255, AC113349
S/G/Y/R/B/O NT_016755AC0084361302466933          
S/G/Y/R/B/O NT_016755AC1133491303534961          
S/G/Y/R/B/O NT_016755AC0994981304964722RH599085493.38  5395.201AC022101, AC011799, AC022101, AC099498, AF167306
S/G/Y/R/B/O NT_016755AC0221011305250593          
S/G/Y/R/B/O NT_016755AC1100031306163221          
S/G/Y/R/B/O NT_016755AC0932061308029943          
S/G/Y/R/B/O NT_016755AC0084441309141073RH268985481.59    1AC044796, AC093206, AC093242, AC008444, AC044796, AC093206, AC093242
S/G/Y/R/B/O NT_016755AC0104621309963803RH411975482.73    1 AC010462
S/G/Y/R/B/O NT_016755AC0086291310878893          
S/G/Y/R/B/O NT_016755AC0170441312207391          
S/G/Y/R/B/O NT_016755AC1094581312221012          
S/G/Y/R/B/O NT_016755AC0447961312795772          
S/G/Y/R/B/O NT_016755AC1100091313386912          
S/G/Y/R/B/O NT_016755AC1143181313943062          
S/G/Y/R/B/O NT_016755AC0133901315363901          


  NT_016755 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_016755AC0162821315646541          
S/G/Y/R/B/O NT_016755AC1094711316393273          
S/G/Y/R/B/O NT_016755AC1094431316962363          
S/G/Y/R/B/O NT_016755AC0210821318233313RH30920  54930.00  1AC024630, AC024630
S/G/Y/R/B/O NT_016755AC0246221318773931          
S/G/Y/R/B/O NT_016755AC1163621318848961          
S/G/Y/R/B/O NT_016755AC0246301318889661          
S/G/Y/R/B/O NT_016755 - RH1036135498.00    0  
S/G/Y/R/B/O NT_016755 - RH38627  54951.00  1AC010424, AC005611, AC008398, AC010424
S/G/Y/R/B/O NT_016755 - RH282995494.29    1AC005213, AC005213, AC011425
S/G/Y/R/B/O NT_016755 - RH284505499.44    1AC108095, AC113421, AC008553, AC108095, AC113421
S/G/Y/R/B/O NT_016755 - RH363845498.97    0