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  Chromosome 5 - RH Maps - Single Contig
 

Chromosome 5 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006693
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006693AC027153516253831          
S/G/Y/R/B/O NT_006693AC106817516308251          
S/G/Y/R/B/O NT_006693AC091935516654332          
S/G/Y/R/B/O NT_006693AC109998517622473          
S/G/Y/R/B/O NT_006693AC091903518340773          
S/G/Y/R/B/O NT_006693AC091920519807301          
S/G/Y/R/B/O NT_006693AC008827521172783          
S/G/Y/R/B/O NT_006693AC022433521682423          
S/G/Y/R/B/O NT_006693AC008936523412953D5S660    5173.801AC091860, AC008936, AC091860
S/G/Y/R/B/O NT_006693AC008936523412953RH30552  51890.00  1AC091860, AC008936, AC091860
S/G/Y/R/B/O NT_006693AC091860523816681          
S/G/Y/R/B/O NT_006693AC010478524325643          
S/G/Y/R/B/O NT_006693AC026798526268173RH283  51873.00  1 AC026798
S/G/Y/R/B/O NT_006693AC091834526285093          
S/G/Y/R/B/O NT_006693AC091866526819673          
S/G/Y/R/B/O NT_006693AC091831528019701          
S/G/Y/R/B/O NT_006693AC008808528268863D5S466    5167.601AC022430, AC008808, AC022430
S/G/Y/R/B/O NT_006693AC008831529332643AFM078WD3    5190.901 AC008831, AC022441, AC027325, AC027350, AC114927
S/G/Y/R/B/O NT_006693AC008831529585173RH674005266.64    1 AC008811, AC008831, AC022441, AC027325, AC114927
S/G/Y/R/B/O NT_006693AC008831529663493RH603905267.52  5164.401 AC008811, AC008831, AC022441, AC027325, AC114927
S/G/Y/R/B/O NT_006693AC008919530348053WI-18174    5163.101 AC008919, AC022441, AC027325, AC114927
S/G/Y/R/B/O NT_006693AC008919530348053RH597735293.72    1 AC008919, AC022441, AC027325, AC114927
S/G/Y/R/B/O NT_006693AC112187531409081SGC32240    5163.102AC017027, AC017027, AC112187
S/G/Y/R/B/O NT_006693AC022430531806431          
S/G/Y/R/B/O NT_006693AC016631531937462          
S/G/Y/R/B/O NT_006693AC008944532459783CHLC.GATA81C06    5167.801AC112187, AC008944, AC112187
S/G/Y/R/B/O NT_006693AC116357533804411          
S/G/Y/R/B/O NT_006693AC091827535063203          
S/G/Y/R/B/O NT_006693AC022126536828843AFM150XG11    5178.401 AC022126
S/G/Y/R/B/O NT_006693AC008900538573813          
S/G/Y/R/B/O NT_006693AC026230539291023RH32538  51919.00  1AC008910, AC008910, AC026230, AF143952
S/G/Y/R/B/O NT_006693AC008910539721223          
S/G/Y/R/B/O NT_006693AC027326539796993          
S/G/Y/R/B/O NT_006693AC022133540015793WI-17921    5179.201 AC022133
S/G/Y/R/B/O NT_006693AC022133540015793RH599425281.69    1 AC022133
S/G/Y/R/B/O NT_006693AC025180540837313SGC33636    5184.101 AC008455, AC025180
S/G/Y/R/B/O NT_006693AC025180540837313RH597345280.47    1 AC008455, AC025180
S/G/Y/R/B/O NT_006693AC025180540838243RH649415273.14    1 AC008455, AC025180
S/G/Y/R/B/O NT_006693AC008966541171863RH471  51940.00  1 AC008455, AC008973, AC016619
S/G/Y/R/B/O NT_006693AC008966542256823RH156405270.05    1 AC008966, AC016619
S/G/Y/R/B/O NT_006693AC008966542423713RH37930  51932.00  1 AC008966
S/G/Y/R/B/O NT_006693AC008966542424333WI-15394    5183.001 AC008966, AC016619
S/G/Y/R/B/O NT_006693AC008966542424333RH603875281.59    1 AC008966, AC016619
S/G/Y/R/B/O NT_006693AC016641542705292          
S/G/Y/R/B/O NT_006693AC026477542995971          
S/G/Y/R/B/O NT_006693AC008866543270572          
S/G/Y/R/B/O NT_006693AC026752543550561          
S/G/Y/R/B/O NT_006693AC027329543797903          
S/G/Y/R/B/O NT_006693AC108114544637442WI-3071    5181.301AC008866, AC027329, AC008866, AC027329, AC108114
S/G/Y/R/B/O NT_006693AC008901547144423WI-4346    5184.201AC024569, AC008901, AC024569


  NT_006693 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006693AC024569548204093RH410825272.28    1 AC020977, AC024569
S/G/Y/R/B/O NT_006693AC025175549968273RH91535X291.13    4AC005000, AL353717, AC005000, AC114979, AL353717
S/G/Y/R/B/O NT_006693AC025175550228403RH411345272.50    1AC024571, AC027153, AC008792, AC024571, AC025175, AC027153, AC114979
S/G/Y/R/B/O NT_006693AC024571550495983          
S/G/Y/R/B/O NT_006693AC016601551438133SGC31091    5184.401AC008882, AC008792, AC008882, AC016601, AC026006
S/G/Y/R/B/O NT_006693AC016601551438133RH603035283.50    1AC008882, AC008792, AC008882, AC016601, AC026006
S/G/Y/R/B/O NT_006693AC008882552294363RH423785219.02  5184.201AC034246, AC008777, AC008882, AC016580, AC026006, AC034246
S/G/Y/R/B/O NT_006693AC008882552294363RH33772  51950.00  1AC034246, AC008777, AC008882, AC016580, AC026006, AC034246
S/G/Y/R/B/O NT_006693AC034246552519983          
S/G/Y/R/B/O NT_006693AC008935553808453RH8951  51968.00  1AC008873, AC016581, AC008873, AC008935, AC016580, AC016581
S/G/Y/R/B/O NT_006693AC008935554095553SGC34222    5193.201AC008873, AC016581, AC008873, AC008935, AC016581
S/G/Y/R/B/O NT_006693AC008873554163533          
S/G/Y/R/B/O NT_006693AC092366555422633          
S/G/Y/R/B/O NT_006693AC091888556068902          
S/G/Y/R/B/O NT_006693AC010835556345621          
S/G/Y/R/B/O NT_006693AC016581556516151          
S/G/Y/R/B/O NT_006693AC008928556940523RH652155283.80    1AC010835, AC091888, AC008928, AC010835, AC091888
S/G/Y/R/B/O NT_006693AC008928557570003WI-4150    5183.901AC010835, AC016583, AC091888, AC008928, AC010835, AC016583, AC091888
S/G/Y/R/B/O NT_006693AC016583557752773          
S/G/Y/R/B/O NT_006693 - RH1027055266.30    1AC027322, AC027322
S/G/Y/R/B/O NT_006693 - SGC32937    5182.801AC112168, AC112168
S/G/Y/R/B/O NT_006693 - RH168445267.85    2AC008790, AC008852, AC066693, AC008790, AC008852, AC066693
S/G/Y/R/B/O NT_006693 - SGC33112    5183.700AC008901, AC008901
S/G/Y/R/B/O NT_006693 - RH411555264.93    1AC008829, AC008833, AC008829, AC008833, AC016600, AC016622, AC016624, AC020975, AC022125, AC022375