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  Chromosome 5 - RH Maps - Single Contig
 

Chromosome 5 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_016779
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_016779AC016618135910911RH598805286.25  5184.503AC008391, AC022431, AC022944, AC008391, AC016618, AC021572, AC022431, AC022944
S/G/Y/R/B/O NT_016779AC020979136094063          
S/G/Y/R/B/O NT_016779AC016553136914843          
S/G/Y/R/B/O NT_016779AC109461138034123          
S/G/Y/R/B/O NT_016779AC016657138590853          
S/G/Y/R/B/O NT_016779AC010450140075133WI-2003    547.601AC016618, AC010450, AC016592, AC016618
S/G/Y/R/B/O NT_016779AC010364140695003          
S/G/Y/R/B/O NT_016779AC016546141872043          
S/G/Y/R/B/O NT_016779AC026811142911973          
S/G/Y/R/B/O NT_016779AC016576144365013          
S/G/Y/R/B/O NT_016779AC034251145607423          
S/G/Y/R/B/O NT_016779AC010419147125523RH60196547.02  543.001 AC010419, AC013637, AC016655, AC018548, AC027344
S/G/Y/R/B/O NT_016779AC010419147557363SGC35052    541.701AC020778, AC026456, AC092133, AC010419, AC013637, AC016655, AC018548, AC020778, AC026456, AC027344, AC074142, AC092133
S/G/Y/R/B/O NT_016779AC010419147557363RH59852539.88    1AC020778, AC026456, AC092133, AC010419, AC013637, AC016655, AC018548, AC020778, AC026456, AC027344, AC074142, AC092133
S/G/Y/R/B/O NT_016779AC010419147558083RH16320539.88    1AC020778, AC026456, AC092133, AC010419, AC013637, AC016655, AC018548, AC020778, AC026456, AC027344, AC074142, AC092133
S/G/Y/R/B/O NT_016779AC010419147569893RH67492547.10    1AC026456, AC092133, AC010419, AC013637, AC016655, AC018548, AC026456, AC027344, AC074142, AC092133
S/G/Y/R/B/O NT_016779AC026456147970453          
S/G/Y/R/B/O NT_016779AC020778148459261          
S/G/Y/R/B/O NT_016779AC016549148564582          
S/G/Y/R/B/O NT_016779AC024574149025702          
S/G/Y/R/B/O NT_016779AC010413149043761          
S/G/Y/R/B/O NT_016779AC092133149707761          
S/G/Y/R/B/O NT_016779AC016654149781183RH12640547.34    1AC010413, AC010413, AC016654
S/G/Y/R/B/O NT_016779AC016652150319223WI-18318    541.701AC010413, AC010352, AC010413, AC010434, AC016652, AC016656
S/G/Y/R/B/O NT_016779AC016652150319223RH59963539.88    1AC010413, AC010352, AC010413, AC010434, AC016652, AC016656
S/G/Y/R/B/O NT_016779AC016652150319693RH78758539.88    1AC010413, AC010352, AC010413, AC016652, AC016656
S/G/Y/R/B/O NT_016779AC016652150554133SGC35149    541.401 AC010352, AC010434, AC016652, AC016656
S/G/Y/R/B/O NT_016779AC016652150554943RH41092547.51    1 AC010352, AC010434, AC016652, AC016656
S/G/Y/R/B/O NT_016779AC016652150813843RH26186540.04    1 AC010352, AC010434, AC016652, AC016656
S/G/Y/R/B/O NT_016779AC016652150818373WI-15727    541.701 AC010352, AC010434, AC016652, AC016656
S/G/Y/R/B/O NT_016779AC016652150818373RH60290539.83    1 AC010352, AC010434, AC016652, AC016656
S/G/Y/R/B/O NT_016779AC016652150824503WI-12799    547.701 AC010352, AC010434, AC016652, AC016656
S/G/Y/R/B/O NT_016779AC026749151858663RH48809540.04    2AC010491, AC026715, AC010491, AC010627, AC026715, AC026749, AC026793, AC093211
S/G/Y/R/B/O NT_016779AC026749152660793RH60173549.50  548.801AC010491, AC010491, AC016649, AC022496, AC026749, AC026793, AC093211, AC108090
S/G/Y/R/B/O NT_016779AC026749152661723RH18318549.50    1AC010491, AC010491, AC016649, AC022496, AC026749, AC026793, AC093211, AC108090
S/G/Y/R/B/O NT_016779AC026749152712113RH60417549.50  548.801AC010491, AC010491, AC016649, AC022496, AC026749, AC026793, AC093211, AC108090
S/G/Y/R/B/O NT_016779AC026749152713643RH10046549.39    1AC010491, AC010491, AC016649, AC022496, AC026749, AC026793, AC093211, AC108090
S/G/Y/R/B/O NT_016779AC026749152777963RH59751549.50  548.801AC010491, AC010491, AC016649, AC022496, AC026437, AC026749, AC093211, AC108090
S/G/Y/R/B/O NT_016779AC026749152822843RH12671549.50    1AC010491, AC010491, AC016649, AC022496, AC026437, AC026749, AC093211, AC108090
S/G/Y/R/B/O NT_016779AC026749152827743RH60057549.50  548.801AC010491, AC010491, AC016649, AC022496, AC026437, AC026749, AC093211, AC108090
S/G/Y/R/B/O NT_016779AC026749152836453RH67141549.61    1AC010491, AC010491, AC016649, AC022496, AC026437, AC026749, AC093211, AC108090
S/G/Y/R/B/O NT_016779AC026749152840213SGC35145    548.901AC010491, AC010491, AC016649, AC022496, AC026437, AC026749, AC108090
S/G/Y/R/B/O NT_016779AC026749152840613RH16357549.50    1AC010491, AC010491, AC016649, AC022496, AC026437, AC026749, AC093211, AC108090
S/G/Y/R/B/O NT_016779AC010491153013933          
S/G/Y/R/B/O NT_016779AC025456153273663RH104308549.50    1 AC016649, AC025456, AC026437, AC108090
S/G/Y/R/B/O NT_016779AC025456153304383RH103894549.50    1 AC016649, AC022496, AC025456, AC026437
S/G/Y/R/B/O NT_016779AC025456153463293RH60370549.45  549.001 AC016649, AC022496, AC025456, AC026437
S/G/Y/R/B/O NT_016779AC025456154319203RH59863549.50  548.801 AC016653, AC025456, AL591609
S/G/Y/R/B/O NT_016779AC016575154498013RH45936551.03    1 AC016653, AL591609
S/G/Y/R/B/O NT_016779AC016651156286393          


  NT_016779 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_016779AC016648158162303WI-10859    552.401AC020982, AC113406, AC012550, AC016648, AC020982, AC026441, AC113406
S/G/Y/R/B/O NT_016779AC020982158352093          
S/G/Y/R/B/O NT_016779AC113406159514141          
S/G/Y/R/B/O NT_016779AC114964159525321          
S/G/Y/R/B/O NT_016779AC016881159661451          
S/G/Y/R/B/O NT_016779AC010477159725033          
S/G/Y/R/B/O NT_016779AC010638161441273RH60406553.38  552.501 AC010638
S/G/Y/R/B/O NT_016779AC010638161442173RH16291553.38    1 AC010638
S/G/Y/R/B/O NT_016779AC091970162268993RH7962  52138.00  1 AC091970
S/G/Y/R/B/O NT_016779AC091970163300453RH60022555.50  554.401 AC026432, AC091970
S/G/Y/R/B/O NT_016779AC027332163914423RH59646553.48  552.301 AC027332
S/G/Y/R/B/O NT_016779AC027332163948013RH36119553.48    1 AC022158, AC026432, AC027332
S/G/Y/R/B/O NT_016779AC091872165123833RH11593556.01    1AC018762, AC018762, AC091872
S/G/Y/R/B/O NT_016779AC091872165124873RH60305556.01  554.301AC018762, AC018762, AC091872
S/G/Y/R/B/O NT_016779AC018762165226473          
S/G/Y/R/B/O NT_016779AC026807165867433          
S/G/Y/R/B/O NT_016779AC016650166774553AFM242YB2    559.801 AC016650
S/G/Y/R/B/O NT_016779AC016650167143393RH103899556.01    1AC013658, AC092335, AC013658, AC016650, AC092335
S/G/Y/R/B/O NT_016779AC092335167894443          
S/G/Y/R/B/O NT_016779AC022102168781502          
S/G/Y/R/B/O NT_016779AC020980168831831          
S/G/Y/R/B/O NT_016779AC013658168907101          
S/G/Y/R/B/O NT_016779AC018409169780271          
S/G/Y/R/B/O NT_016779AC016621170047411          
S/G/Y/R/B/O NT_016779AC022113170464491RH10813562.54    2AC016621, AC018409, AC020980, AC022102, AC108703, AC010392, AC016621, AC018409, AC020980, AC020981, AC022102, AC022113, AC108703
S/G/Y/R/B/O NT_016779AC022113170464491RH75027559.80    2AC016621, AC018409, AC020980, AC022102, AC108703, AC010392, AC016621, AC018409, AC020980, AC020981, AC022102, AC022113, AC108703
S/G/Y/R/B/O NT_016779AC022113170464721RH60416560.00  554.502AC016621, AC018409, AC020980, AC022102, AC108703, AC010392, AC016621, AC018409, AC020980, AC020981, AC022102, AC022113, AC108703
S/G/Y/R/B/O NT_016779AC022113170465251RH16190563.74    2AC016621, AC018409, AC020980, AC022102, AC108703, AC010392, AC016621, AC018409, AC020980, AC020981, AC022102, AC022113, AC108703
S/G/Y/R/B/O NT_016779AC022113170473081RH36253560.10    2AC016621, AC018409, AC020980, AC022102, AC108703, AC010392, AC016621, AC018409, AC020980, AC020981, AC022102, AC022113, AC108703
S/G/Y/R/B/O NT_016779AC022113170679651RH76658562.64    1AC016621, AC018409, AC010392, AC016621, AC018409, AC020981, AC022113
S/G/Y/R/B/O NT_016779AC022113170696281RH47732560.10    2AC016621, AC018409, AC020980, AC108703, AC010392, AC016621, AC018409, AC020980, AC020981, AC022113, AC108703
S/G/Y/R/B/O NT_016779AC024588172501383RH66617560.20    1AC010358, AC010358, AC016653, AC024588
S/G/Y/R/B/O NT_016779AC024588172568143RH41141563.94    1AC010358, AC010473, AC010308, AC010358, AC010473, AC016653, AC024588
S/G/Y/R/B/O NT_016779AC024588172602513RH11757558.69    1AC010358, AC010473, AC010308, AC010358, AC010473, AC016653, AC024588
S/G/Y/R/B/O NT_016779AC024588172603463RH10602563.89    1AC010358, AC010473, AC010308, AC010358, AC010473, AC016653, AC024588
S/G/Y/R/B/O NT_016779AC024588172609273RH41174560.10    1AC010358, AC010473, AC010358, AC010473, AC024588
S/G/Y/R/B/O NT_016779AC024588173147633RH13358560.10    1AC010310, AC010358, AC010473, AC010310, AC010358, AC010473, AC024588
S/G/Y/R/B/O NT_016779AC010473173348823RH12416560.10    1AC010310, AC010358, AC010308, AC010310, AC010358, AC010473
S/G/Y/R/B/O NT_016779AC010473173350193RH12641560.20    1AC010310, AC010358, AC010308, AC010310, AC010358, AC010473
S/G/Y/R/B/O NT_016779AC010358173712923RH67618565.24    1AC010310, AC010310, AC010358, AC023060
S/G/Y/R/B/O NT_016779AC010310174074713          
S/G/Y/R/B/O NT_016779AC010607175115503          
S/G/Y/R/B/O NT_016779AC108111175843782          
S/G/Y/R/B/O NT_016779AC026790177183913RH104167562.09    1AC091878, AC022936, AC026790, AC090070, AC091878
S/G/Y/R/B/O NT_016779AC026790177663453RH15222567.57    1AC091878, AC026790, AC091878
S/G/Y/R/B/O NT_016779AC091878178201373RH103673564.31    1AC026504, AC022936, AC026504, AC090070, AC091878
S/G/Y/R/B/O NT_016779AC026785178713803RH10622565.45    1AC026504, AC026504
S/G/Y/R/B/O NT_016779AC026504179753771          
S/G/Y/R/B/O NT_016779AC106774180363361RH103120564.31    1AC068100, AC041048, AC068100, AC106774
S/G/Y/R/B/O NT_016779AC068100181198191          


  NT_016779 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_016779 - RH12750562.12    0  
S/G/Y/R/B/O NT_016779 - RH41245553.28    0  
S/G/Y/R/B/O NT_016779 - RH47616558.69    0  
S/G/Y/R/B/O NT_016779 - RH48047562.02    0  
S/G/Y/R/B/O NT_016779 - RH65419557.46    1AC016790, AC068917, AC113397, AC114965, AC016790, AC068917, AC113397, AC114965
S/G/Y/R/B/O NT_016779 - RH74958555.50    0