Chromosome 5 - RH Maps - Single Contig

Chromosome 5 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033086	NT_023089	NT_006576	NT_033103	NT_029977	NT_016779	NT_033104	NT_023110
NT_033119	NT_023097	NT_023084	NT_023115	NT_023315	NT_033112	NT_006547	NT_023162
NT_006577	NT_023114	NT_023216	NT_023124	NT_026281	NT_023085	NT_033113	NT_033110
NT_006679	NT_023195	NT_033085	NT_006702	NT_023098	NT_028188	NT_031794	NT_023102
NT_023081	NT_006693	NT_016864	NT_033115	NT_033092	NT_006665	NT_006497	NT_006431
NT_033093	NT_006790	NT_006713	NT_026283	NT_023083	NT_033077	NT_033111	NT_033079
NT_007022	NT_006540	NT_030680	NT_029973	NT_028179	NT_033118	NT_006731	NT_023148
NT_023290	NT_033094	NT_033116	NT_006654	NT_033095	NT_033098	NT_033082	NT_033096
NT_023091	NT_006789	NT_033108	NT_006899	NT_006780	NT_030685	NT_025721	NT_033106
NT_025702	NT_023192	NT_029295	NT_033097	NT_016755	NT_029975	NT_033083	NT_033084
NT_023238	NT_033105	NT_007072	NT_033091	NT_016714	NT_006859	NT_006489	NT_029289
NT_033078	NT_023269	NT_023248	NT_030691	NT_006788	NT_030698	NT_033117	NT_033080
NT_023133	NT_006907	NT_023132	NT_033089	NT_006725	NT_023093	NT_006802	NT_006932
NT_006519

NT_016864

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_016864	AC112198	56113946	3	WI-5731					5	184.20	1	AC010436,	AC010436, AC112198
S/G/Y/R/B/O	NT_016864	AC010436	56177595	3	RH76002	5	289.49					1		AC008819, AC010436, AC091845, AJ401092
S/G/Y/R/B/O	NT_016864	AC034238	56181261	3
S/G/Y/R/B/O	NT_016864	AC091977	56362823	3	RH41131	5	274.90					1		AC025790, AC026737, AC091977, AL355820
S/G/Y/R/B/O	NT_016864	AC091977	56365534	3	RH41160	5	274.90					1		AC025790, AC026737, AC091977
S/G/Y/R/B/O	NT_016864	AC091977	56367005	3	SGC34842					5	192.30	1		AC025790, AC026737, AC091977, AL355820
S/G/Y/R/B/O	NT_016864	AC091977	56429582	3	RH80859	5	287.18					1	AC020728, AC026704,	AC020728, AC025790, AC026704, AC026737, AC091977, AL355820, M87499
S/G/Y/R/B/O	NT_016864	AC091977	56429702	3	RH41250	5	287.08					1	AC020728, AC026704,	AC020728, AC025790, AC026704, AC026737, AC091977, AL355820, M87499
S/G/Y/R/B/O	NT_016864	AC026704	56465367	3	RH59803	5	283.40			5	189.80	1	AC020728,	AC020728, AC025790, AC026704
S/G/Y/R/B/O	NT_016864	AC020728	56481136	3	RH60000	5	273.23					1		AC020728, AL355820
S/G/Y/R/B/O	NT_016864	AC020728	56481136	3	WI-14214					5	193.20	1		AC020728, AL355820
S/G/Y/R/B/O	NT_016864	AC020728	56614780	3	RH99030	5	278.94					1	AC010480,	AC010480, AC020728
S/G/Y/R/B/O	NT_016864	AC020728	56623831	3	RH59726	5	281.59			5	190.40	1	AC010480,	AC010480, AC020728
S/G/Y/R/B/O	NT_016864	AC010480	56630893	3
S/G/Y/R/B/O	NT_016864	AC025777	56691195	2
S/G/Y/R/B/O	NT_016864	AC035146	56698343	1
S/G/Y/R/B/O	NT_016864	AC008784	56745576	3	RH64395	1	152.02			1	200.70	2	AC025777, AC035146, AL356212,	AC008784, AC025777, AC035146, AL356212
S/G/Y/R/B/O	NT_016864	AC008784	56807151	3	RH42148	5	277.74					1	AC035146,	AC008784, AC035146
S/G/Y/R/B/O	NT_016864	AC008784	56807151	3	RH466			5	2005.00			1	AC035146,	AC008784, AC035146
S/G/Y/R/B/O	NT_016864	AC016632	56871198	1
S/G/Y/R/B/O	NT_016864	AC008914	57120643	3	SGC44558					5	191.00	1	AC016596,	AC008914, AC016596, AC022265
S/G/Y/R/B/O	NT_016864	AC008914	57120643	3	RH59890	5	286.14					1	AC016596,	AC008914, AC016596, AC022265
S/G/Y/R/B/O	NT_016864	AC008914	57134991	3	RH15643	5	283.50					1	AC016596,	AC008857, AC008914, AC016596, AC022265
S/G/Y/R/B/O	NT_016864	AC008914	57136533	3	RH7892			5	2025.00			1	AC016596,	AC008857, AC008914, AC016596, AC022265
S/G/Y/R/B/O	NT_016864	AC008914	57136618	3	RH15655	5	275.11					1	AC016596,	AC008857, AC008914, AC016596, AC022265
S/G/Y/R/B/O	NT_016864	AC016596	57139339	3	RH17700	5	286.67					1		AC008857, AC016596
S/G/Y/R/B/O	NT_016864	AC016596	57208102	3	RH33793			5	2029.00			1	AC008892,	AC008892, AC016596
S/G/Y/R/B/O	NT_016864	AC008892	57208866	3
S/G/Y/R/B/O	NT_016864	AC008767	57297922	3	SGC30290					5	185.50	1	AC011121, AC016585,	AC008767, AC011121, AC016585
S/G/Y/R/B/O	NT_016864	AC008767	57297922	3	RH60267	5	286.87					1	AC011121, AC016585,	AC008767, AC011121, AC016585
S/G/Y/R/B/O	NT_016864	AC008767	57298086	3	RH26142	5	285.52					1	AC011121, AC016585,	AC008767, AC011121, AC016585
S/G/Y/R/B/O	NT_016864	AC008767	57298096	3	RH60117	5	281.69			5	190.20	1	AC011121, AC016585,	AC008767, AC011121, AC016585
S/G/Y/R/B/O	NT_016864	AC011121	57331929	1
S/G/Y/R/B/O	NT_016864	AC016585	57348581	1