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  Chromosome 5 - RH Maps - Single Contig
 

Chromosome 5 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006725
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006725AC0102971848511951RH603635644.61  5541.602AC010239, AC010239, AC010297
S/G/Y/R/B/O NT_006725AC0102971848516651RH599065644.61  5539.802AC010239, AC010239, AC010297
S/G/Y/R/B/O NT_006725AC0102971848669291RH1028585644.31    1  
S/G/Y/R/B/O NT_006725AC0102971848691201RH598175644.61  5539.801 AC010297
S/G/Y/R/B/O NT_006725AC0919421848769561          
S/G/Y/R/B/O NT_006725AC0103161849203973RH461615643.94    1AC010297, AC091942, AC010297, AC010316, AC091942
S/G/Y/R/B/O NT_006725AC0103161849240303RH685595637.01    1AC091942, AC010316, AC091942
S/G/Y/R/B/O NT_006725AC0103161849366733RH796675644.31    1AC091942, AC010316, AC091942
S/G/Y/R/B/O NT_006725AC0103161849392803RH472755644.61    1AC091942, AC010316, AC091942
S/G/Y/R/B/O NT_006725AC0103161849396013RH1032025644.61    1AC091942, AC010316, AC091942
S/G/Y/R/B/O NT_006725AC0919341850011263RH480535644.61    1AC091942, AC091934, AC091942
S/G/Y/R/B/O NT_006725AC0919341850254693RH359705644.31    1AC024042, AC091942, AC113391, AC024042, AC091934, AC091942, AC113391
S/G/Y/R/B/O NT_006725AC0919341850255423RH597995644.61  5539.801AC024042, AC091942, AC024042, AC091934, AC091942
S/G/Y/R/B/O NT_006725AC0919341850259753RH779985644.61    1AC024042, AC091942, AC113391, AC024042, AC091934, AC091942, AC113391
S/G/Y/R/B/O NT_006725AC0919341850504223RH7879  56188.00  1AC113391, AC091934, AC113391
S/G/Y/R/B/O NT_006725AC0919341850886723RH747905639.45    1AC024042, AC113391, AC024042, AC091934, AC113391
S/G/Y/R/B/O NT_006725AC0919341850886943RH103905644.61    1AC113391, AC091934, AC113391
S/G/Y/R/B/O NT_006725AC0240421850930511          
S/G/Y/R/B/O NT_006725AC1133911850964511          
S/G/Y/R/B/O NT_006725AC0122831851738731          
S/G/Y/R/B/O NT_006725AC0918971853091982RH602695643.90  5541.501AC012283, AC027318, AC034209, AC012283, AC027318, AC034209, AC091897, AC091902
S/G/Y/R/B/O NT_006725AC0918971853092922RH765045637.01    1AC012283, AC027318, AC034209, AC012283, AC027318, AC034209, AC091897, AC091902
S/G/Y/R/B/O NT_006725AC0342091853336652RH600505644.35  5544.501AC027318, AC091897, AC027318, AC034209, AC091897, AC091902
S/G/Y/R/B/O NT_006725AC0342091853337102RH106505644.61    1AC027318, AC091897, AC027318, AC034209, AC091897, AC091902
S/G/Y/R/B/O NT_006725AC0273181853593892RH462845645.13    1AC027317, AC027317, AC027318
S/G/Y/R/B/O NT_006725AC0273171854065471          
S/G/Y/R/B/O NT_006725AC0273141854937473SGC32143    5540.801AC027317, AC027314, AC027317
S/G/Y/R/B/O NT_006725AC0273141854937473RH603015636.91    1AC027317, AC027314, AC027317
S/G/Y/R/B/O NT_006725AC0273141855010933RH14182  56314.00  1AC027317, AC026513, AC027314, AC027317
S/G/Y/R/B/O NT_006725AC0273141855089793RH478375636.91    1 AC026513, AC027314
S/G/Y/R/B/O NT_006725AC0273141855257063RH758415644.31    1 AC026513, AC027314, Y13901
S/G/Y/R/B/O NT_006725AC0273141855651973RH922995644.31    1AC008570, AC008570, AC027314
S/G/Y/R/B/O NT_006725AC0085701856256543WI-11713    5546.601AC110005, AC008570, AC110005
S/G/Y/R/B/O NT_006725AC0085701856256543RH598425657.75    1AC110005, AC008570, AC110005
S/G/Y/R/B/O NT_006725AC0085701856397913RH686195636.91    1AC110005, AC008570, AC110005
S/G/Y/R/B/O NT_006725AC0085701856399163SGC34971    5540.801AC110005, AC008570, AC110005
S/G/Y/R/B/O NT_006725AC0085701856399163RH604195636.91    1AC110005, AC008570, AC110005
S/G/Y/R/B/O NT_006725AC1100051857232301WI-14959    5540.901 AC110005
S/G/Y/R/B/O NT_006725AC1100051857232301RH601035636.91    1 AC110005
S/G/Y/R/B/O NT_006725AC1100051857279441WI-21083    5541.601 AC110005
S/G/Y/R/B/O NT_006725AC1100051857279441RH600405642.69    1 AC110005
S/G/Y/R/B/O NT_006725AC1100051857280861RH74592  56350.00  1 AC110005
S/G/Y/R/B/O NT_006725AC1100051857292631WI-11343    5541.001 AC110005
S/G/Y/R/B/O NT_006725AC1100051857292631RH597625636.91    1 AC110005
S/G/Y/R/B/O NT_006725AC1100051857347181RH766795663.25    1AC112170, AC110005, AC112170
S/G/Y/R/B/O NT_006725AC1100051857715911RH38582  56353.00  1AC112170, AC112170
S/G/Y/R/B/O NT_006725AC1121701857596151WI-9602    5546.501AC110005, AC110005, AC112170
S/G/Y/R/B/O NT_006725AC1121701857596151RH598115657.65    1AC110005, AC110005, AC112170
S/G/Y/R/B/O NT_006725AC1121701857599401RH412305636.91    1AC110005, AC110005, AC112170
S/G/Y/R/B/O NT_006725AC0900631858403043RH100475636.91    1AC110005, AC112170, AC090063, AC110005, AC112170


  NT_006725 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006725AC0900631858665143RH176185636.91    1AC112170, AC090063, AC112170
S/G/Y/R/B/O NT_006725AC0900631858700753RH678495637.01    1AC112170, AC090063, AC112170, M17466
S/G/Y/R/B/O NT_006725AC0900631858700913RH767205644.35    1AC112170, AC090063, AC112170, M17466
S/G/Y/R/B/O NT_006725AC0900631858700963RH702955636.91    1AC112170, AC090063, AC112170, M17466
S/G/Y/R/B/O NT_006725AC0900631858706083RH477795644.31    1AC112170, AC090063, AC112170, M17466
S/G/Y/R/B/O NT_006725AC0900631859097193RH603115643.90  5541.801AC023788, AC008542, AC023788, AC090063
S/G/Y/R/B/O NT_006725AC0900631859098123RH705225636.91    1AC023788, AC008542, AC023788, AC090063
S/G/Y/R/B/O NT_006725AC0900631859168973RH472315645.50    1AC023788, AC008542, AC023788, AC090063
S/G/Y/R/B/O NT_006725AC0900631859249303RH603865645.13  5542.701AC023788, AC008542, AC023788, AC090063
S/G/Y/R/B/O NT_006725AC0900631859512733RH807955656.99    2AC023788, AC116354, AC008542, AC023788, AC090063, AC116354
S/G/Y/R/B/O NT_006725AC0900631859581153RH653645645.50    2AC023788, AC116354, AC008542, AC023788, AC116354
S/G/Y/R/B/O NT_006725AC0900631859794613RH474895645.50    2AC008404, AC023788, AC116354, AC008404, AC008542, AC023788, AC090063, AC116354
S/G/Y/R/B/O NT_006725AC0900631859794873RH599475645.92  5541.702AC008404, AC023788, AC116354, AC008404, AC023788, AC090063, AC116354
S/G/Y/R/B/O NT_006725AC0900631859870653RH781255645.92    2AC008404, AC023788, AC116354, AC008404, AC008542, AC023788, AC090063, AC116354
S/G/Y/R/B/O NT_006725AC0084041860136093          
S/G/Y/R/B/O NT_006725AC0237881860629621RH128405645.50    2AC116354, AC023788, AC116354
S/G/Y/R/B/O NT_006725AC0237881860630251RH249515645.50    2AC116354, AC023788, AC116354
S/G/Y/R/B/O NT_006725AC0237881860820371RH988475645.13    2AC116354, AC023788, AC116354
S/G/Y/R/B/O NT_006725 - RH286395645.92    1AC092290, AC104115, AC092290, AC104115
S/G/Y/R/B/O NT_006725 - RH367395644.61    0AC008393, AC010313, AC008393, AC010313, AC092269
S/G/Y/R/B/O NT_006725 - RH412205644.31    0  
S/G/Y/R/B/O NT_006725 - RH412535644.61    0AC010239, AC010239
S/G/Y/R/B/O NT_006725 - RH412585645.13    0  
S/G/Y/R/B/O NT_006725 - RH597475644.61  5539.900  
S/G/Y/R/B/O NT_006725 - WI-4026    5539.901AC008659, AC026097, AC008659, AC026097, AC061981
S/G/Y/R/B/O NT_006725 - TIGR-A003N35    5540.301AC008479, AC112165, AC008479, AC112165
S/G/Y/R/B/O NT_006725 - WI-925    5540.401AC008499, AC016578, AC008499, AC016578, AC016579
S/G/Y/R/B/O NT_006725 - RH598295644.61  5541.700AC010297, AC010297
S/G/Y/R/B/O NT_006725 - RH601895644.61    0AC010297, AC010297
S/G/Y/R/B/O NT_006725 - RH780075645.92    0  
S/G/Y/R/B/O NT_006725 - RH926765644.61    0AC010297, AC010297
S/G/Y/R/B/O NT_006725 - RH988115644.31    0AC010297, AC010297