Chromosome 5 - RH Maps - Single Contig

Chromosome 5 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033086	NT_023089	NT_006576	NT_033103	NT_029977	NT_016779	NT_033104	NT_023110
NT_033119	NT_023097	NT_023084	NT_023115	NT_023315	NT_033112	NT_006547	NT_023162
NT_006577	NT_023114	NT_023216	NT_023124	NT_026281	NT_023085	NT_033113	NT_033110
NT_006679	NT_023195	NT_033085	NT_006702	NT_023098	NT_028188	NT_031794	NT_023102
NT_023081	NT_006693	NT_016864	NT_033115	NT_033092	NT_006665	NT_006497	NT_006431
NT_033093	NT_006790	NT_006713	NT_026283	NT_023083	NT_033077	NT_033111	NT_033079
NT_007022	NT_006540	NT_030680	NT_029973	NT_028179	NT_033118	NT_006731	NT_023148
NT_023290	NT_033094	NT_033116	NT_006654	NT_033095	NT_033098	NT_033082	NT_033096
NT_023091	NT_006789	NT_033108	NT_006899	NT_006780	NT_030685	NT_025721	NT_033106
NT_025702	NT_023192	NT_029295	NT_033097	NT_016755	NT_029975	NT_033083	NT_033084
NT_023238	NT_033105	NT_007072	NT_033091	NT_016714	NT_006859	NT_006489	NT_029289
NT_033078	NT_023269	NT_023248	NT_030691	NT_006788	NT_030698	NT_033117	NT_033080
NT_023133	NT_006907	NT_023132	NT_033089	NT_006725	NT_023093	NT_006802	NT_006932
NT_006519

NT_025702

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_025702	AC027320	123752575	3	RH60259	5	484.14			5	391.90	1		AC027320
S/G/Y/R/B/O	NT_025702	AC027320	123753927	3	RH102844	5	484.24					1		AC027320
S/G/Y/R/B/O	NT_025702	AC027320	123773114	3	RH102109	5	484.24					1		AC027320
S/G/Y/R/B/O	NT_025702	AC027320	123781063	3	RH45932	5	484.14					1	AC008475,	AC008475, AC027320
S/G/Y/R/B/O	NT_025702	AC008475	123844660	3	RH69758	5	484.24					1	AC035144,	AC008475, AC035144
S/G/Y/R/B/O	NT_025702	AC035144	123863378	3	RH93581	5	484.24					1		AC035144
S/G/Y/R/B/O	NT_025702	AC035144	123864512	3	RH68508	5	485.85					1		AC035144
S/G/Y/R/B/O	NT_025702	AC035144	123879997	3	RH8868			5	4631.00			1	AC026795,	AC026795, AC035144
S/G/Y/R/B/O	NT_025702	AC035144	123899352	3	RH25772	5	481.83					1	AC026795,	AC026795, AC035144
S/G/Y/R/B/O	NT_025702	AC035144	123899620	3	RH16153	5	484.14					1	AC026795,	AC026795, AC035144
S/G/Y/R/B/O	NT_025702	AC035144	123904693	3	RH93420	5	484.24					1	AC026795,	AC026795, AC035144
S/G/Y/R/B/O	NT_025702	AC026795	123945575	3
S/G/Y/R/B/O	NT_025702	AC024564	124040449	3	WI-11223					5	391.90	1		AC010293, AC024564, AC068029
S/G/Y/R/B/O	NT_025702	AC024564	124047253	3	RH10570	5	484.24					1		AC010293, AC024564, AC068029, AF057740
S/G/Y/R/B/O	NT_025702	AC024564	124047263	3	RH41256	5	484.24					1		AC010293, AC024564, AC068029, AF057740
S/G/Y/R/B/O	NT_025702	AC010409	124097672	3
S/G/Y/R/B/O	NT_025702	AC008550	124218417	3	D5S471					5	389.40	1	AC010348,	AC008419, AC008550, AC010348
S/G/Y/R/B/O	NT_025702	AC008550	124218417	3	RH13469	5	484.24	5	4638.00			1	AC010348,	AC008419, AC008550, AC010348
S/G/Y/R/B/O	NT_025702	AC010348	124278499	3
S/G/Y/R/B/O	NT_025702	AC093272	124357106	1
S/G/Y/R/B/O	NT_025702	AC113421	124364018	1
S/G/Y/R/B/O	NT_025702	AC114309	124382589	3
S/G/Y/R/B/O	NT_025702	AC008574	124405318	3
S/G/Y/R/B/O	NT_025702	AC108095	124472543	3	RH28450	5	499.44					1	AC113421,	AC008553, AC108095, AC113421
S/G/Y/R/B/O	NT_025702	AC108095	124472560	3	RH8955			5	4671.00			1	AC113421,	AC008553, AC108095, AC113421
S/G/Y/R/B/O	NT_025702	AC024566	124588362	3
S/G/Y/R/B/O	NT_025702	AC109447	124647170	3
S/G/Y/R/B/O	NT_025702		-		RH26898	5	481.59					1	AC008444, AC044796, AC093206, AC093242,	AC008444, AC044796, AC093206, AC093242
S/G/Y/R/B/O	NT_025702		-		RH41197	5	482.73					1	AC010462,	AC010462
S/G/Y/R/B/O	NT_025702		-		RH76634	5	482.44					0