Home    Genome Browser    BLAT Search    Help
  Chromosome 5 - RH Maps - Single Contig
 

Chromosome 5 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006497
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006497AC023629630924061          
S/G/Y/R/B/O NT_006497AC010273631936523RH451685341.85    1AC022107, AC023629, AC024583, AC010273, AC022107, AC023629, AC024583
S/G/Y/R/B/O NT_006497AC010273632000463RH937995341.06    1AC022107, AC023629, AC024583, AC010273, AC022107, AC023629, AC024583
S/G/Y/R/B/O NT_006497AC010273632003013RH412035341.34    1AC022107, AC023629, AC024583, AC010273, AC022107, AC023629, AC024583
S/G/Y/R/B/O NT_006497AC022107632480383          
S/G/Y/R/B/O NT_006497AC024583633035162RH941055341.34    2AC023485, AC023629, AC093223, AC023485, AC023629, AC024583, AC026179, AC066584, AC093223
S/G/Y/R/B/O NT_006497AC093223633465022RH709205339.90    2AC109996, AC093223, AC109996
S/G/Y/R/B/O NT_006497AC109996633507202RH14087  52500.00  1AC093223, AC093223, AC109996
S/G/Y/R/B/O NT_006497AC109996634261032RH760805340.89    1AC015470, AC015470, AC109996
S/G/Y/R/B/O NT_006497AC109996634390632RH14733  52493.00  1AC015470, AC015470, AC109996
S/G/Y/R/B/O NT_006497AC109996634888842RH989115341.34    1AC010355, AC015470, AC010355, AC015470, AC109996
S/G/Y/R/B/O NT_006497AC015470634152581          
S/G/Y/R/B/O NT_006497AC010355635181863RH673405340.56    1AC015470, AC010355, AC015470
S/G/Y/R/B/O NT_006497AC010355635597523WI-4206    5245.601AC015470, AC010355, AC015470
S/G/Y/R/B/O NT_006497AC044797636283113RH412355344.77    1AC010355, AC010355, AC012369, AC044797, AC109487
S/G/Y/R/B/O NT_006497AC044797636284353RH410975344.88    1AC010355, AC010355, AC012369, AC044797, AC109487
S/G/Y/R/B/O NT_006497AC044797636469243RH603455355.34  5249.801 AC044797
S/G/Y/R/B/O NT_006497AC044797636481523RH489595345.50    1AC010355, AC011244, AC010355, AC011244, AC012369, AC044797, AC109487
S/G/Y/R/B/O NT_006497AC044797636580523RH264345355.70    1AC011244, AC011244, AC012369, AC044797, AC109487, U80017
S/G/Y/R/B/O NT_006497AC044797636646433RH601505355.34  5249.801AC011244, AC011244, AC012369, AC044797, AC109487, U80017
S/G/Y/R/B/O NT_006497AC044797636690843RH935375347.80    1AC011244, AC011244, AC012369, AC044797, AC109487, U80017
S/G/Y/R/B/O NT_006497AC044797636692863RH465775343.90    1AC011244, AC011244, AC012369, AC044797, AC109487, U80017
S/G/Y/R/B/O NT_006497AC044797636714803RH361545347.48    1 AB048533, AC012369, AC044797, AC109487, U80017
S/G/Y/R/B/O NT_006497AC044797636744583RH600745354.3152521.005251.002AC011244, AC044800, AB048533, AC011244, AC044797, AC044800, U80017
S/G/Y/R/B/O NT_006497AC044797636745133RH183465345.50    2AC011244, AC044800, AB048533, AC011244, AC044797, AC044800, U80017
S/G/Y/R/B/O NT_006497AC044797636988643RH475405347.48    2AC011244, AC044800, AC005031, AC011244, AC012369, AC044797, AC044800, AC109487, U80017
S/G/Y/R/B/O NT_006497AC044797637334493RH603695353.5952600.005250.902AC004999, AC010217, AC010237, AC022119, AC004999, AC005031, AC010217, AC010237, AC010272, AC012369, AC022119, AC044797, AC093202, AC109487, U80017
S/G/Y/R/B/O NT_006497AC044797637492343RH911395358.96    2 AC010272
S/G/Y/R/B/O NT_006497AC044797637492343RH268315354.70    2 AC010272
S/G/Y/R/B/O NT_006497AC044797637493153RH172935346.97    2AC004999, AC010237, AC016554, AC022119, AC004999, AC005031, AC010237, AC010272, AC016554, AC022119, AC044797, U80017
S/G/Y/R/B/O NT_006497AC044797637493293RH412345355.45    2AC004999, AC010237, AC016554, AC022119, AC004999, AC005031, AC010237, AC010272, AC016554, AC022119, AC044797, U80017
S/G/Y/R/B/O NT_006497AC044797637942643RH1030405344.77    2AC004999, AC010217, AC016554, AC022119, AC004999, AC010217, AC010272, AC016554, AC022119, AC044797, AC093202
S/G/Y/R/B/O NT_006497AC016554638372873RH603895341.90  5249.902AC004999, AC010217, AC004999, AC010217, AC016554
S/G/Y/R/B/O NT_006497AC016554638415283RH42914  52524.00  4AC004999, AC010217, AC090439, AC090439, AC004999, AC010217, AC012369, AC016554, AC090439, AC090439, AC109487
S/G/Y/R/B/O NT_006497AC010217638609843          
S/G/Y/R/B/O NT_006497AC093280639049791          
S/G/Y/R/B/O NT_006497AC091873639245363WI-4768    584.301 AC091873
S/G/Y/R/B/O NT_006497AC091873639260173RH59853575.09  589.502AC091869, AC091869, AC091873
S/G/Y/R/B/O NT_006497AC091873639307893RH71451575.79    2AC091869, AC091869, AC091873
S/G/Y/R/B/O NT_006497AC091873639310753D5S411    584.402AC091869, AC091869, AC091873
S/G/Y/R/B/O NT_006497AC091873639310753RH13330575.59    2AC091869, AC091869, AC091873
S/G/Y/R/B/O NT_006497AC008783640910673          
S/G/Y/R/B/O NT_006497AC004999641548093RH42914  52524.00  4AC010217, AC016554, AC090439, AC090439, AC004999, AC010217, AC012369, AC016554, AC090439, AC090439, AC109487
S/G/Y/R/B/O NT_006497AC004999641590823RH603895341.90  5249.902AC010217, AC016554, AC004999, AC010217, AC016554
S/G/Y/R/B/O NT_006497AC022119642020393RH1030405344.77    2AC004999, AC010217, AC016554, AC044797, AC004999, AC010217, AC010272, AC016554, AC022119, AC044797, AC093202
S/G/Y/R/B/O NT_006497AC010237642468873RH412345355.45    2AC004999, AC016554, AC022119, AC044797, AC004999, AC005031, AC010237, AC010272, AC016554, AC022119, AC044797, U80017
S/G/Y/R/B/O NT_006497AC010237642469983RH911395358.96    2 AC010272
S/G/Y/R/B/O NT_006497AC010237642469983RH268315354.70    2 AC010272
S/G/Y/R/B/O NT_006497AC010237642470413RH172935346.97    2AC004999, AC016554, AC022119, AC044797, AC004999, AC005031, AC010237, AC010272, AC016554, AC022119, AC044797, U80017
S/G/Y/R/B/O NT_006497AC010237642628973RH603695353.5952600.005250.902AC004999, AC010217, AC022119, AC044797, AC004999, AC005031, AC010217, AC010237, AC010272, AC012369, AC022119, AC044797, AC093202, AC109487, U80017


  NT_006497 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006497AC023817643678992RH8936  52525.00  5AC010237, AC011244, AC044800, AC093243, AC108108, AL133255, AL157879, AC010237, AC011244, AC023817, AC044800, AC093243, AC093247, AC108108, AC114970, AL009030, AL133255, AL157879, AL161433
S/G/Y/R/B/O NT_006497AC011244643995541          
S/G/Y/R/B/O NT_006497AC044800644262951RH600745354.3152521.005251.002AC011244, AC044797, AB048533, AC011244, AC044797, AC044800, U80017
S/G/Y/R/B/O NT_006497AC044800644263501RH183465345.50    2AC011244, AC044797, AB048533, AC011244, AC044797, AC044800, U80017
S/G/Y/R/B/O NT_006497AC044800644449961RH475405347.48    2AC011244, AC044797, AC005031, AC011244, AC012369, AC044797, AC044800, AC109487, U80017
S/G/Y/R/B/O NT_006497AC044800644518511RH597285343.39  5251.301AC011244, AC005031, AC011244, AC012369, AC044800, U80017
S/G/Y/R/B/O NT_006497AC108108644967341RH8936  52525.00  5AC010237, AC011244, AC023817, AC044800, AC093243, AL133255, AL157879, AC010237, AC011244, AC023817, AC044800, AC093243, AC093247, AC108108, AC114970, AL009030, AL133255, AL157879, AL161433
S/G/Y/R/B/O NT_006497 - RH35473  52315.00  0