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  Chromosome 5 - RH Maps - Single Contig
 

Chromosome 5 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033086 NT_023089 NT_006576 NT_033103 NT_029977 NT_016779 NT_033104 NT_023110
NT_033119 NT_023097 NT_023084 NT_023115 NT_023315 NT_033112 NT_006547 NT_023162
NT_006577 NT_023114 NT_023216 NT_023124 NT_026281 NT_023085 NT_033113 NT_033110
NT_006679 NT_023195 NT_033085 NT_006702 NT_023098 NT_028188 NT_031794 NT_023102
NT_023081 NT_006693 NT_016864 NT_033115 NT_033092 NT_006665 NT_006497 NT_006431
NT_033093 NT_006790 NT_006713 NT_026283 NT_023083 NT_033077 NT_033111 NT_033079
NT_007022 NT_006540 NT_030680 NT_029973 NT_028179 NT_033118 NT_006731 NT_023148
NT_023290 NT_033094 NT_033116 NT_006654 NT_033095 NT_033098 NT_033082 NT_033096
NT_023091 NT_006789 NT_033108 NT_006899 NT_006780 NT_030685 NT_025721 NT_033106
NT_025702 NT_023192 NT_029295 NT_033097 NT_016755 NT_029975 NT_033083 NT_033084
NT_023238 NT_033105 NT_007072 NT_033091 NT_016714 NT_006859 NT_006489 NT_029289
NT_033078 NT_023269 NT_023248 NT_030691 NT_006788 NT_030698 NT_033117 NT_033080
NT_023133 NT_006907 NT_023132 NT_033089 NT_006725 NT_023093 NT_006802 NT_006932
NT_006519


  NT_006431
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006431AC021525646889501          
S/G/Y/R/B/O NT_006431AC091862647217622          
S/G/Y/R/B/O NT_006431AC016561670047051RH418995313.20    1 AC016561
S/G/Y/R/B/O NT_006431AC035143648788393RH1042255317.29    1AC008854, AC008854, AC035143
S/G/Y/R/B/O NT_006431AC035143649011333RH269015319.05    1 AC035143
S/G/Y/R/B/O NT_006431AC008854649145343RH599755312.49  5225.201 AC008854
S/G/Y/R/B/O NT_006431AC008854649147133RH101045316.67    1 AC008854
S/G/Y/R/B/O NT_006431AC008898650207093RH487715318.89    1 AC008898
S/G/Y/R/B/O NT_006431AC008898650212993RH928325313.73    1 AC008898, AC021314
S/G/Y/R/B/O NT_006431AC008898650217693RH600285315.69  5230.201 AC008898, AC021314
S/G/Y/R/B/O NT_006431AC008898650218203RH459755313.20    1 AC008898, AC021314
S/G/Y/R/B/O NT_006431AC008898650263553RH411695314.64    1 AC008898
S/G/Y/R/B/O NT_006431AC109465651105503RH285055319.00    1 AC021314, AC109465
S/G/Y/R/B/O NT_006431AC092354652291113          
S/G/Y/R/B/O NT_006431AC008896653478223WI-10829    5230.201 AC008896, AC011111
S/G/Y/R/B/O NT_006431AC008896654045633WI-3133    5232.101AC008847, AC008847, AC008896, AC011111
S/G/Y/R/B/O NT_006431AC008847654513153RH1020055319.60    1 AC008847
S/G/Y/R/B/O NT_006431AC008868654845151          
S/G/Y/R/B/O NT_006431AC025776655414141          
S/G/Y/R/B/O NT_006431AC010341655499121          
S/G/Y/R/B/O NT_006431AC025477655609971          
S/G/Y/R/B/O NT_006431AC008373655698432          
S/G/Y/R/B/O NT_006431AC016636656512743          
S/G/Y/R/B/O NT_006431AC008836657847123RH805655299.68    1 AC008836
S/G/Y/R/B/O NT_006431AC008836658526243RH13868  52207.00  1AC026746, AC026809, AC008836, AC026746, AC026750, AC026809
S/G/Y/R/B/O NT_006431AC026746659106513RH920055301.80    1AC026809, AC026746, AC026750, AC026809
S/G/Y/R/B/O NT_006431AC016645660141313          
S/G/Y/R/B/O NT_006431AC094086660208811          
S/G/Y/R/B/O NT_006431AC026809660308201          
S/G/Y/R/B/O NT_006431AC026434660411583          
S/G/Y/R/B/O NT_006431AC016599661405433          
S/G/Y/R/B/O NT_006431AC091836663254083AFMA100ZF5    5218.401 AC091836
S/G/Y/R/B/O NT_006431AC034242664254383          
S/G/Y/R/B/O NT_006431AC016637666356043RH671145302.55    1 AC008884, AC016637, AC026460, AC073543
S/G/Y/R/B/O NT_006431AC016637666359953RH749035299.00    1 AC008884, AC016637, AC026460, AC073543
S/G/Y/R/B/O NT_006431AC016637666363553RH678705301.80    1 AC008884, AC016637, AC026460, AC073543
S/G/Y/R/B/O NT_006431AC016637666364673WI-20590    5209.901 AC008884, AC016637, AC026460, AC073543
S/G/Y/R/B/O NT_006431AC016637666373213RH1020995303.85    1 AC008884, AC016637, AC026460, AC073543
S/G/Y/R/B/O NT_006431AC016637666385583RH938355301.91    1 AC016637, AC026460, AC073543
S/G/Y/R/B/O NT_006431AC016637666388363RH598685300.37  5213.601 AC008884, AC016637, AC026460, AC073543
S/G/Y/R/B/O NT_006431AC008917667912513WI-6453    5216.001AC114982, AC008917, AC016605, AC114982
S/G/Y/R/B/O NT_006431AC114982668396721          
S/G/Y/R/B/O NT_006431AC008859668645083RH764875298.36    1 AC008859
S/G/Y/R/B/O NT_006431AC008859668787143RH168355302.55    1 AC008859
S/G/Y/R/B/O NT_006431AC008859668931973RH101755301.39    1 AC008859
S/G/Y/R/B/O NT_006431AC008859668932673RH255505297.96    1 AC008859
S/G/Y/R/B/O NT_006431AC008859668933203RH603345303.22  5216.201 AC008859
S/G/Y/R/B/O NT_006431AC016623670072973RH603005316.3452343.005226.801AC016561, AC016561, AC016623
S/G/Y/R/B/O NT_006431AC016623670103043RH599835314.64  5225.201 AC016623, AC073536
S/G/Y/R/B/O NT_006431AC016623670573783RH481  52349.00  1AC025776, AC016623, AC025776, AC073536


  NT_006431 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006431AC016623670828003RH601405314.9752349.005225.201AC010341, AC025776, AC010341, AC010383, AC016623, AC025776, AC073536
S/G/Y/R/B/O NT_006431AC016623670828663RH162565313.20    1AC010341, AC025776, AC010341, AC010383, AC016623, AC025776, AC073536
S/G/Y/R/B/O NT_006431AC092360671747883RH928755313.73    1AC025455, AC025455, AC091916, AC092360
S/G/Y/R/B/O NT_006431AC092360672670693AFMA037WA5    5230.201AC018420, AC025455, AC018420, AC025455, AC092360
S/G/Y/R/B/O NT_006431AC025455672852462          
S/G/Y/R/B/O NT_006431AC016616673033612          
S/G/Y/R/B/O NT_006431AC099505673611723RH654235317.00    2AC008868, AC008868, AC099505, AC112480
S/G/Y/R/B/O NT_006431AC025186673910433          
S/G/Y/R/B/O NT_006431AC025176674885903RH410755322.35    2AC025186, AC025176, AC025186, AC040942, AC099516, AC112480
S/G/Y/R/B/O NT_006431AC016620676070053RH936235322.96    1 AC016620, AC040942, AC099516
S/G/Y/R/B/O NT_006431AC016620676575983RH283865338.29    1AC008560, AC008560, AC008828, AC016611, AC016620
S/G/Y/R/B/O NT_006431AC016620676733973RH688055323.83    1AC008560, AC008560, AC008828, AC016620, AC027324
S/G/Y/R/B/O NT_006431AC016620676734993RH600635322.4652376.005240.101AC008560, AC008560, AC008828, AC016620, AC027324
S/G/Y/R/B/O NT_006431AC016620676761933RH174395324.16    1AC008560, AC008560, AC008828, AC016611, AC016620, AC027324
S/G/Y/R/B/O NT_006431AC016620676762863RH410735323.83    1AC008560, AC008560, AC008828, AC027324
S/G/Y/R/B/O NT_006431AC008560676786263RH601085322.79  5238.401 AC008560, AC008828, AC016611, AC027324
S/G/Y/R/B/O NT_006431AC008560676792263RH665615339.18    1 AC008560, AC008828, AC016611, AC027324
S/G/Y/R/B/O NT_006431AC008560676803103RH1900  52372.00  1 AC008560, AC016611, AC027324
S/G/Y/R/B/O NT_006431AC008560677095933RH658835322.79    1 AC008560, AC008828, AC016611, AC027324
S/G/Y/R/B/O NT_006431AC008560677149493RH692345324.27    1 AC008560, AC027324
S/G/Y/R/B/O NT_006431AC008560677194193RH809485320.26    1 AC008560, AC008828, AC016611, AC027324
S/G/Y/R/B/O NT_006431AC008560677293273RH698975322.35    1 AC008828, AC016611
S/G/Y/R/B/O NT_006431AC008560677302173RH1036505324.60    1 AC008560, AC008828, AC016611, AC027324
S/G/Y/R/B/O NT_006431AC008560677542033RH674895335.69    1 AC008560, AC016611, AC027324
S/G/Y/R/B/O NT_006431AC008560677546573RH411405323.83    1 AC008560, AC008828, AC016611, AC027324
S/G/Y/R/B/O NT_006431AC008560677552563RH412005323.40    1 AC008560, AC008828, AC016611, AC027324
S/G/Y/R/B/O NT_006431AC008560677590503RH597875321.04  5240.101 AC008560, AC008828, AC016611, AC027324
S/G/Y/R/B/O NT_006431AC008958677931033RH598695320.70  5241.301 AC008828, AC008958, AC010357, AC016611, AC027324
S/G/Y/R/B/O NT_006431AC008958677932753RH663595321.04    1 AC008828, AC008958, AC010357, AC016611, AC027324
S/G/Y/R/B/O NT_006431AC008958678359683RH8953  52381.00  1AC016643, AC008958, AC010357, AC016643, AC079468
S/G/Y/R/B/O NT_006431AC008958678360523RH284495339.13    1AC016643, AC008958, AC010357, AC016643, AC079468
S/G/Y/R/B/O NT_006431AC016643678743773RH1025125320.75    1 AC010357, AC016643, AC079468
S/G/Y/R/B/O NT_006431AC016643679127883RH483575324.60    1 AC010357, AC016643, AC079468
S/G/Y/R/B/O NT_006431AC016643679132053RH38037  52381.00  1 AC010357, AC016643, AC079468
S/G/Y/R/B/O NT_006431AC016643679134353RH167245324.60    1 AC010357, AC016643, AC079468
S/G/Y/R/B/O NT_006431AC016643679171263RH686465324.60    1 AC010357, AC016643, AC079468
S/G/Y/R/B/O NT_006431AC016643679180523RH104105321.92    1 AC010357, AC016643, AC079468
S/G/Y/R/B/O NT_006431AC010359680136393RH365565322.02    1 AC008889, AC010356, AC010359
S/G/Y/R/B/O NT_006431AC010359680155433RH598795320.81  5239.901 AC010359
S/G/Y/R/B/O NT_006431AC010359680417683RH781795322.79    1 AC008889, AC010356, AC010359
S/G/Y/R/B/O NT_006431AC010359681683283RH602065324.57  5242.601AC016603, AC025442, AC008563, AC010359, AC016603, AC025442
S/G/Y/R/B/O NT_006431AC016603681696443RH462585337.30    1AC025442, AC008563, AC016603, AC025442
S/G/Y/R/B/O NT_006431AC025442682596383RH602395326.8952390.005242.001AC008373, AC008772, AC010630, AC113378, AC008373, AC008772, AC010630, AC025442, AC113378
S/G/Y/R/B/O NT_006431AC025442682679243RH485475339.24    1AC008772, AC010630, AC008772, AC010630, AC025442
S/G/Y/R/B/O NT_006431AC008772682691313RH599795337.30  5241.901AC008373, AC010630, AC113378, AC008373, AC008772, AC010630, AC020902, AC113378
S/G/Y/R/B/O NT_006431AC008772682722043RH37929  52395.00  1AC008373, AC010630, AC113378, AC008373, AC008772, AC010630, AC020902, AC113378
S/G/Y/R/B/O NT_006431AC010630683112032          
S/G/Y/R/B/O NT_006431AC113378683479961          
S/G/Y/R/B/O NT_006431AC010345683747463          
S/G/Y/R/B/O NT_006431AC092353685920563RH921345339.79    1AC092373, AC092353, AC092373


  NT_006431 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006431AC092373685939063          
S/G/Y/R/B/O NT_006431AC113365686887223          
S/G/Y/R/B/O NT_006431AC092349687068853          
S/G/Y/R/B/O NT_006431AC016634688328703          
S/G/Y/R/B/O NT_006431AC008872690357873RH136205329.8252447.00  1 AC008872
S/G/Y/R/B/O NT_006431AC034208690941073          
S/G/Y/R/B/O NT_006431AC008920691418623RH479925325.32    1AC008480, AC063978, AC008480, AC008920, AC010402, AC016640, AC063978
S/G/Y/R/B/O NT_006431AC008920692004913RH658685337.30    1AC008480, AC044799, AC008480, AC008920, AC010402, AC044799
S/G/Y/R/B/O NT_006431AC044799692214111          
S/G/Y/R/B/O NT_006431AC063978692353381          
S/G/Y/R/B/O NT_006431AC008480692358831          
S/G/Y/R/B/O NT_006431AC026445692586743RH599615340.45  5243.601AC044799, AC026445, AC044799
S/G/Y/R/B/O NT_006431AC026445692594793RH990125339.13    1AC044799, AC026445, AC044799
S/G/Y/R/B/O NT_006431AC026445692595463RH809445320.81    1AC044799, AC026445, AC044799
S/G/Y/R/B/O NT_006431AC026445692726153RH935705340.23    1AC044799, AC026445, AC044799
S/G/Y/R/B/O NT_006431AC026445692727693RH807775323.94    1AC044799, AC026445, AC044799
S/G/Y/R/B/O NT_006431AC010420693272443          
S/G/Y/R/B/O NT_006431AC010459694172962          
S/G/Y/R/B/O NT_006431AC018420694340551          
S/G/Y/R/B/O NT_006431AC008965695458183RH708185303.85    1 AC008965
S/G/Y/R/B/O NT_006431AC008965695484873RH367975312.69    1  
S/G/Y/R/B/O NT_006431AC008911696338713WI-5782    5226.901AC008965, AC008911, AC008965, AC020939, AC022163
S/G/Y/R/B/O NT_006431AC099519696860913          
S/G/Y/R/B/O NT_006431AC099504697397203          
S/G/Y/R/B/O NT_006431AC008558698987813RH61695310.57  5223.601AC099504, AC016646, AC099504
S/G/Y/R/B/O NT_006431AC113166700194633          
S/G/Y/R/B/O NT_006431AC025445703154393RH410855304.92    1 AC021844, AC025445, AC025453, AC092328
S/G/Y/R/B/O NT_006431AC113420703768583          
S/G/Y/R/B/O NT_006431AC092331704821431          
S/G/Y/R/B/O NT_006431AC116364706442961          
S/G/Y/R/B/O NT_006431AC069163706920781          
S/G/Y/R/B/O NT_006431AC008459707387622          
S/G/Y/R/B/O NT_006431AC110010708749301          
S/G/Y/R/B/O NT_006431AC112206709442333          
S/G/Y/R/B/O NT_006431AC106798711295233          
S/G/Y/R/B/O NT_006431AC024581712719983RH4765814255.86    3AC091835, AL356017, AL390254, AC024581, AC091835, AL356017, AL390254
S/G/Y/R/B/O NT_006431AC024581712726263RH9898014255.86    3AC091835, AL356017, AL390254, AC024581, AC091835, AL356017, AL390254
S/G/Y/R/B/O NT_006431AC010376714478853WI-10470    5245.301 AC010376, AC012316, AC019283, AC106773
S/G/Y/R/B/O NT_006431AC104120715192323          
S/G/Y/R/B/O NT_006431AC016564716484233RH455855341.34    1 AC008414, AC016564
S/G/Y/R/B/O NT_006431AC016564716544343RH942455341.34    1 AC008414, AC016564
S/G/Y/R/B/O NT_006431AC016564717050603RH603075339.79  5246.201 AC008414, AC016564
S/G/Y/R/B/O NT_006431AC016564717138133RH38128  52478.00  1 AC008414, AC016564
S/G/Y/R/B/O NT_006431AC016564717140123RH445175341.12    1 AC008414, AC016564
S/G/Y/R/B/O NT_006431AC016564717140263RH177165337.85    1 AC008414, AC016564
S/G/Y/R/B/O NT_006431AC016564717144673RH601155340.34  5247.401 AC008414, AC016564
S/G/Y/R/B/O NT_006431AC016564717146783RH601445342.01  5246.801 AC008414, AC016564
S/G/Y/R/B/O NT_006431AC016564717153263RH601255340.3452474.005246.001 AC008414, AC016564
S/G/Y/R/B/O NT_006431AC016564717171443RH598675341.00  5247.201 AC008414, AC016564
S/G/Y/R/B/O NT_006431AC024579717242553          


  NT_006431 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006431AC010280718741253          
S/G/Y/R/B/O NT_006431AC020941720637293RH30913  52483.00  1AC022136, AC022136
S/G/Y/R/B/O NT_006431AC024567721886693CHLC.GATA52H10    5247.101 AC024567
S/G/Y/R/B/O NT_006431AC010236722133513          
S/G/Y/R/B/O NT_006431AC093523722617002          
S/G/Y/R/B/O NT_006431AC093226723805821          
S/G/Y/R/B/O NT_006431AC022136723868391          
S/G/Y/R/B/O NT_006431AC093248724138971          
S/G/Y/R/B/O NT_006431 - RH1042145299.16    0  
S/G/Y/R/B/O NT_006431 - RH357395299.39    0  
S/G/Y/R/B/O NT_006431 - RH412035341.34    1AC010273, AC022107, AC023629, AC024583, AC010273, AC022107, AC023629, AC024583
S/G/Y/R/B/O NT_006431 - RH451685341.85    1AC010273, AC022107, AC023629, AC024583, AC010273, AC022107, AC023629, AC024583
S/G/Y/R/B/O NT_006431 - RH600995317.29  5230.300AC008854, AC008854
S/G/Y/R/B/O NT_006431 - RH603895341.90    2AC004999, AC010217, AC016554, AC004999, AC010217, AC016554
S/G/Y/R/B/O NT_006431 - WI-4206    5245.601AC010355, AC015470, AC010355, AC015470
S/G/Y/R/B/O NT_006431 - RH673405340.56    1AC010355, AC015470, AC010355, AC015470
S/G/Y/R/B/O NT_006431 - RH709205339.90    2AC093223, AC109996, AC093223, AC109996
S/G/Y/R/B/O NT_006431 - RH760805340.89    1AC015470, AC109996, AC015470, AC109996
S/G/Y/R/B/O NT_006431 - RH927565314.56    0AC008898, AC008898, AC021314
S/G/Y/R/B/O NT_006431 - RH937995341.06    1AC010273, AC022107, AC023629, AC024583, AC010273, AC022107, AC023629, AC024583
S/G/Y/R/B/O NT_006431 - RH941055341.34    2AC023485, AC023629, AC024583, AC093223, AC023485, AC023629, AC024583, AC026179, AC066584, AC093223
S/G/Y/R/B/O NT_006431 - RH989115341.34    1AC010355, AC015470, AC109996, AC010355, AC015470, AC109996