Home    Genome Browser    BLAT Search    Help
  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_028050
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028050AC104453988255223D1S415    1290.201 AC104453
S/G/Y/R/B/O NT_028050AC104453988445313D1S420    1290.201 AC027691, AC104453
S/G/Y/R/B/O NT_028050AC104453988660373RH30683  14671.00  1 AC027691, AC104453
S/G/Y/R/B/O NT_028050AL611943989147833          
S/G/Y/R/B/O NT_028050AL596109989279173          
S/G/Y/R/B/O NT_028050AL137794991403283WI-2994    1290.201 AL137794
S/G/Y/R/B/O NT_028050AL160056991789663RH493441280.7914686.00  1 AL160056
S/G/Y/R/B/O NT_028050AL160056993069893RH647571277.86    1AC073463, AL672220, AC073463, AL160056, AL672220
S/G/Y/R/B/O NT_028050AL672220993965281D1S1547    1293.701AC095031, AC095031, AL672220
S/G/Y/R/B/O NT_028050AC073463993258371          
S/G/Y/R/B/O NT_028050AC095031994390983CHLC.GATA32F02    1293.701 AC095031
S/G/Y/R/B/O NT_028050AL627442995149522RH644831281.52    1 AL627442
S/G/Y/R/B/O NT_028050AL627442995227612RH682511282.87    1 AC103593
S/G/Y/R/B/O NT_028050AL627442995773982WI-5518    1270.801 AC022907, AL627442
S/G/Y/R/B/O NT_028050AL590110997040613RH752181270.31    1 AC022907, AL590110
S/G/Y/R/B/O NT_028050AL161744997356693RH646581282.77    1 AC022823, AL161744, AL359696
S/G/Y/R/B/O NT_028050AL445433998888423RH374746156.31    3AL160163, AL450447, AC109468, AL160163, AL450447
S/G/Y/R/B/O NT_028050AL1361471000648603CHLC.GATA4H05    1301.601AC020645, AL139425, AC020645, AL136147, AL139425
S/G/Y/R/B/O NT_028050AC0206451001215361RH251341270.59    2AC097313, AL139425, AC020645, AC097313, AL139425
S/G/Y/R/B/O NT_028050AC0206451001215361RH646371286.96    2AC097313, AL139425, AC020645, AC097313, AL139425
S/G/Y/R/B/O NT_028050AC0206451001217341RH646081287.06    2AC097313, AL139425, AC020645, AC097313, AL139425
S/G/Y/R/B/O NT_028050AC0206451001220321RH646261287.06    2AC097313, AL139425, AC020645, AC097313, AL139425
S/G/Y/R/B/O NT_028050AC0206451001220481RH258861287.36    2AC097313, AL139425, AC020645, AC097313, AL139425
S/G/Y/R/B/O NT_028050AC0206451001223541RH670751289.79    2AC097313, AL139425, AC020645, AC097313, AL139425
S/G/Y/R/B/O NT_028050AL1394251001294602          
S/G/Y/R/B/O NT_028050AL3652201001730972          
S/G/Y/R/B/O NT_028050AL4490631003159313RH493641287.06    1AC093559, AC093559, AL449063
S/G/Y/R/B/O NT_028050AC0935591004630783RH453211291.89    1AC105270, AC093559, AC105270
S/G/Y/R/B/O NT_028050AC1052701004867753RH701381292.70    1 AC105270
S/G/Y/R/B/O NT_028050AC1052701005000053RH637961285.16  1304.001 AC105270
S/G/Y/R/B/O NT_028050AC1052701005078513RH360011293.12    1 AC105270
S/G/Y/R/B/O NT_028050AC1052701005223973RH694131292.49    1 AC105270
S/G/Y/R/B/O NT_028050AC1052701005715693RH677471293.98    1 AC105270
S/G/Y/R/B/O NT_028050AL4510511006362113RH361745493.48    2AC008541, AC026773, AC008541, AC022117, AC026773, AL451051
S/G/Y/R/B/O NT_028050AC0969491007359051RH8648  14775.00  1AL160009, AC096949, AL160009
S/G/Y/R/B/O NT_028050AC0969491007359651RH117271290.73    1AL160009, AC096949, AL160009
S/G/Y/R/B/O NT_028050AC0969491007361761RH497231291.26  1303.501AL160009, AC096949, AL160009
S/G/Y/R/B/O NT_028050AC0969491007380241RH505021290.83  1304.301AL160009, AC096949, AL160009
S/G/Y/R/B/O NT_028050AL1600091007397621          
S/G/Y/R/B/O NT_028050AC0930191008398703RH932671289.39    1AL160009, AC027557, AC093019, AL160009
S/G/Y/R/B/O NT_028050AC0930191008408223RH696111293.12    1AL160009, AC027557, AC093019, AL160009
S/G/Y/R/B/O NT_028050AC0930191008418373RH450311292.80    1AL160009, AC027557, AC093019, AL160009
S/G/Y/R/B/O NT_028050AC0930191008846483RH479531289.28    1 AC027557, AC093019
S/G/Y/R/B/O NT_028050AC0930191008852663RH1033891293.44    1 AC027557, AC093019
S/G/Y/R/B/O NT_028050AC0930191008865523RH450011292.70    1 AC027557, AC093019, AL355995
S/G/Y/R/B/O NT_028050AC0930191008975373RH504001292.70  1304.901 AC027557, AC093019, AL355995
S/G/Y/R/B/O NT_028050AL4459281009627353RH700931297.23    1 AL445928
S/G/Y/R/B/O NT_028050AL4459281009643863RH641951292.7014806.001310.101 AC027557, AL355995, AL445928
S/G/Y/R/B/O NT_028050AL4459281009667273RH183271293.23    1 AC027557, AL355995, AL445928
S/G/Y/R/B/O NT_028050AL4459281009678053RH254551292.70    1 AC027557, AL445928


  NT_028050 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028050AL4459281009721563RH694861297.23    1 AC027557, AL355995, AL445928
S/G/Y/R/B/O NT_028050AL4459281009860853RH678011293.44    1 AL355995, AL445928
S/G/Y/R/B/O NT_028050AL4459281009877013RH642811289.39  1298.501 AL355995, AL445928
S/G/Y/R/B/O NT_028050AL4459281009877013RH14520  12889.00  1 AL355995, AL445928
S/G/Y/R/B/O NT_028050AL4459281010012263RH643351289.28  1310.701 AL355995, AL445928
S/G/Y/R/B/O NT_028050AL4459281010102823RH497791292.70  1305.401 AL355995, AL445928
S/G/Y/R/B/O NT_028050AL4459281010293573RH647971291.75    1 AL445928
S/G/Y/R/B/O NT_028050AL4459281010724903RH662251292.49    1AL663111, AL445928, AL663111
S/G/Y/R/B/O NT_028050AL4459281010772373RH985351294.62    1AL663111, AL445928, AL663111
S/G/Y/R/B/O NT_028050AL6631111011058811WI-22159    1310.401 AL663111
S/G/Y/R/B/O NT_028050AL6631111011058811RH499971294.08    1 AL663111
S/G/Y/R/B/O NT_028050AC1044571011793861AFMA109WH5    1308.501AC011265, AL663111, AC011265, AC104457, AL663111
S/G/Y/R/B/O NT_028050AC1044571012177341RH927161297.23    1AC011265, AC011265, AC104457
S/G/Y/R/B/O NT_028050AC0112651012481901          
S/G/Y/R/B/O NT_028050AL5899901013324003RH27018X129.03    1 AL589990
S/G/Y/R/B/O NT_028050AL5899901013335903WI-22470    1312.501AC099670, AC099670, AL589990
S/G/Y/R/B/O NT_028050AL5899901013335903RH507171295.26    1AC099670, AC099670, AL589990
S/G/Y/R/B/O NT_028050AC0996701013423673AFMA125XC9    1316.601 AC099670
S/G/Y/R/B/O NT_028050AC0996701013555303RH1037901296.39    1 AB042411, AC099670
S/G/Y/R/B/O NT_028050AC0996701014098243WI-3294    1312.701 AC099670
S/G/Y/R/B/O NT_028050 - RH369361282.36    1AC104506, AL139019, AC104506, AL139019
S/G/Y/R/B/O NT_028050 - WI-22602    1306.601AL139019, AL139019
S/G/Y/R/B/O NT_028050 - RH489771292.43    3AC013599, AC025933, AC105272, AL513482, AC013599, AC025933, AC105272, AL513482, AL590104
S/G/Y/R/B/O NT_028050 - RH643591282.98    1AC073364, AL355145, AC011780, AC073364, AL355145
S/G/Y/R/B/O NT_028050 - RH781191291.75    0  
S/G/Y/R/B/O NT_028050 - RH801101289.18    0AC105270, AC105270