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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_004386
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004386AL157894455310351          
S/G/Y/R/B/O NT_004386AL121602455925631RH931401143.98    1AL157894, AL121602, AL157894
S/G/Y/R/B/O NT_004386AL121602455930761RH285551144.40    1AL157894, AL121602, AL157894, AL360086
S/G/Y/R/B/O NT_004386AL121602455933271RH709501144.91    1AL157894, AL157894, AL360086
S/G/Y/R/B/O NT_004386AL121602455933371RH470451144.40    1AL157894, AL121602, AL157894, AL360086
S/G/Y/R/B/O NT_004386AL121602455935291RH502311144.29    1AL157894, AL121602, AL157894, AL360086
S/G/Y/R/B/O NT_004386AL121602455935291WI-20790    1169.601AL157894, AL121602, AL157894, AL360086
S/G/Y/R/B/O NT_004386AL121602455935441RH709321143.72    1AL157894, AL121602, AL157894, AL360086
S/G/Y/R/B/O NT_004386AL122001456316043RH8763  19024.00  2AL121602, AL157894, AL450998, AC058783, AC058783, AL121602, AL122001, AL157894, AL360086, AL450998, S61826
S/G/Y/R/B/O NT_004386AL122001456316373RH63867154.20    2AL121602, AL121602, AL122001
S/G/Y/R/B/O NT_004386AL122001456770813RH496111143.46    1AL157894, AL122001, AL137799, AL157894
S/G/Y/R/B/O NT_004386AL122001456770813WI-6598    1157.601AL157894, AL122001, AL137799, AL157894
S/G/Y/R/B/O NT_004386AL122001456771273RH108651145.33    1AL157894, AL122001, AL137799, AL157894
S/G/Y/R/B/O NT_004386AL122001456787863RH704441145.33    1 AL122001, AL137799
S/G/Y/R/B/O NT_004386AL122001456796063RH653281145.91    1AL121602, AL157894, AL121602, AL122001, AL137799, AL157894
S/G/Y/R/B/O NT_004386AL122001456840383RH285271144.40    1AL157894, AL122001, AL137799, AL157894
S/G/Y/R/B/O NT_004386AL122001457285503RH498591145.30    1AL157894, AL122001, AL137799, AL157894
S/G/Y/R/B/O NT_004386AL122001457285503WI-15790    1162.301AL157894, AL122001, AL137799, AL157894
S/G/Y/R/B/O NT_004386AL122001457332803WI-11165    1167.001AL157894, AL122001, AL137799, AL157894
S/G/Y/R/B/O NT_004386AL137797457448893WI-3019    1167.601AL157894, AL137797, AL137799, AL157894
S/G/Y/R/B/O NT_004386AL137797457509633RH648031145.19    1AL157894, AL137797, AL137799, AL157894
S/G/Y/R/B/O NT_004386AL136373458500913RH983821145.91    1 AL136373
S/G/Y/R/B/O NT_004386AL136373458717113RH485041143.46    1 AL136373
S/G/Y/R/B/O NT_004386AL136373458724833RH502581145.50    1 AL136373, AL357392
S/G/Y/R/B/O NT_004386AL136373458724833WI-19607    1167.501 AL136373, AL357392
S/G/Y/R/B/O NT_004386AL136373458725663RH104611143.98    1 AL136373, AL357392
S/G/Y/R/B/O NT_004386AL136373458991803RH647741145.50    1 AL136373, AL357392
S/G/Y/R/B/O NT_004386AL136373458991803RH1939  12377.00  1 AL136373, AL357392
S/G/Y/R/B/O NT_004386AL136373459228083RH810541144.50    1 AL136373, AL357392
S/G/Y/R/B/O NT_004386AL136373459478263RH167321145.40    1 AL136373, AL357392
S/G/Y/R/B/O NT_004386AL136373459500993RH647841145.50    1 AL136373, AL357392
S/G/Y/R/B/O NT_004386AL136373459500993RH7982  12267.00  1 AL136373, AL357392
S/G/Y/R/B/O NT_004386AL593856459884362RH1035251145.33    1 AC013593, AL357392, AL593856
S/G/Y/R/B/O NT_004386AL593856459902112RH497341145.40    1 AC013593, AL357392, AL593856
S/G/Y/R/B/O NT_004386AL593856459902112WI-18600    1167.001 AC013593, AL357392, AL593856
S/G/Y/R/B/O NT_004386AL593856459902112RH158161143.77    1 AC013593, AL357392, AL593856
S/G/Y/R/B/O NT_004386AL593856459916202RH501521145.91    1 AC013593, AL357392, AL593856
S/G/Y/R/B/O NT_004386AL593856459916202WI-11938    1167.601 AC013593, AL357392, AL593856
S/G/Y/R/B/O NT_004386AL593856460111762RH362091145.61    1 AC013593, AL593856
S/G/Y/R/B/O NT_004386AL593856460281422RH365151145.33    1 AC013593, AL593856
S/G/Y/R/B/O NT_004386AL593856460581322RH937002190.02    2AC016747, AC013593, AC016747, AL593856
S/G/Y/R/B/O NT_004386AL356793461338653RH647641145.50    1 AL356793
S/G/Y/R/B/O NT_004386AL356793461338653RH1860  12378.00  1 AL356793
S/G/Y/R/B/O NT_004386AL356793461340923RH657401150.97    1 AL356793
S/G/Y/R/B/O NT_004386 - RH1035301145.81    1AL109659, AL109659
S/G/Y/R/B/O NT_004386 - RH1039381145.81    1AL109659, AL356289, AL109659, AL139427, AL356289
S/G/Y/R/B/O NT_004386 - RH1045421145.71    0  
S/G/Y/R/B/O NT_004386 - RH1045461145.71    0  
S/G/Y/R/B/O NT_004386 - RH464581143.87    1AL500525, AL500525
S/G/Y/R/B/O NT_004386 - RH493341145.81    1AC097062, AC097062


  NT_004386 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_004386 - RH643461143.87    1AC097062, AC097062
S/G/Y/R/B/O NT_004386 - RH650211143.83    0  
S/G/Y/R/B/O NT_004386 - RH657311143.87    1AC097062, AC023341, AC097062
S/G/Y/R/B/O NT_004386 - RH687231145.91    1AC013447, AC096541, AC013447, AC096541, AL691459
S/G/Y/R/B/O NT_004386 - RH751371144.88    1AC013447, AC013447, AL691459
S/G/Y/R/B/O NT_004386 - RH764241145.71    0  
S/G/Y/R/B/O NT_004386 - RH764721145.61    0 More than 15
S/G/Y/R/B/O NT_004386 - RH765121143.98    1AC055887, AL359959, AC055887, AL359959
S/G/Y/R/B/O NT_004386 - RH783301145.40    0 AF208532, AJ131016
S/G/Y/R/B/O NT_004386 - RH803511143.62    0  
S/G/Y/R/B/O NT_004386 - RH930271145.40    1AC055887, AL109659, AC055887, AL109659
S/G/Y/R/B/O NT_004386 - RH982101143.77    0  
S/G/Y/R/B/O NT_004386 - RH991981145.50    0 AL450996