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  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_031728
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_031728AL1625952261700933WI-4922    1899.501 AC036234, AL162595, AL672289
S/G/Y/R/B/O NT_031728AL1625952262577643RH759561724.63    1 AC036234, AF216972, AL162595, X16660
S/G/Y/R/B/O NT_031728AL1625952262593213RH456581725.05    1 AC036234, AF216972, AL162595, AL672289, X16660
S/G/Y/R/B/O NT_031728AL1173502262911133RH167911727.42    1 AC036234, AL117350, AL672289
S/G/Y/R/B/O NT_031728AL1173502262917733RH700761727.42    1 AC036234, AL117350, AL672289
S/G/Y/R/B/O NT_031728AL1173502262922923RH251841727.22    1 AC036234, AL117350, AL672289
S/G/Y/R/B/O NT_031728AL1173502262923823RH500751727.42  1900.701 AC036234, AL117350, AL672289
S/G/Y/R/B/O NT_031728AL1173502262923823RH14118  81889.00  1 AC036234, AL117350, AL672289
S/G/Y/R/B/O NT_031728AL1173502262923973RH368911726.62    1 AC036234, AL117350, AL672289
S/G/Y/R/B/O NT_031728AL1173502263091653RH646481733.29    1 AC036234
S/G/Y/R/B/O NT_031728AL1173502263096903RH166741727.42    1 AC036234, AL117350, AL672289
S/G/Y/R/B/O NT_031728AL1173502263099093RH33388  18948.00  1 AC036234, AL117350, AL672289
S/G/Y/R/B/O NT_031728AL1173502263563363RH507111724.31  1897.901AC055781, AC055781, AL117350
S/G/Y/R/B/O NT_031728AL1173502263563363RH32611  12915.00  1AC055781, AC055781, AL117350
S/G/Y/R/B/O NT_031728AL1600042264183423RH361581727.42    1AC055781, AC055781, AF182035, AL160004, M20543
S/G/Y/R/B/O NT_031728AL1600042264273573RH765371727.01    1AC055781, AC055781, AL160004
S/G/Y/R/B/O NT_031728AL1600042264283523RH497181726.38  1901.001AC055781, AC055781, AL160004
S/G/Y/R/B/O NT_031728AL1600042264283983RH119401727.42    1AC055781, AC055781, AL160004
S/G/Y/R/B/O NT_031728AL1600042264289233RH126391727.42    1AC055781, AC055781, AL160004
S/G/Y/R/B/O NT_031728AL1600042264409843RH508681726.31    1AC055781, AC055781, AL160004
S/G/Y/R/B/O NT_031728AL1600042264409843SGC35003    1891.401AC055781, AC055781, AL160004
S/G/Y/R/B/O NT_031728AL1600042264409843RH33466  12906.00  1AC055781, AC055781, AL160004
S/G/Y/R/B/O NT_031728AL1600042264515573RH643411734.55  1900.701AC055781, AL139252, AC016301, AC055781, AL139252, AL160004
S/G/Y/R/B/O NT_031728AL1600042264515603RH506921724.31  1899.501AC055781, AL139252, AC016301, AC055781, AL139252, AL160004
S/G/Y/R/B/O NT_031728AL1392522264519733          
S/G/Y/R/B/O NT_031728AC0557812264750421          
S/G/Y/R/B/O NT_031728AL1219902265041362RH990441727.42    1 AC016301, AL121990
S/G/Y/R/B/O NT_031728AL1219902265050142RH263641734.86    1 AC016301, AC100760, AL121990
S/G/Y/R/B/O NT_031728AL1219902265104692RH503101726.62  1900.901 AC016301, AL121990
S/G/Y/R/B/O NT_031728AL1219902265104692RH32958  12900.00  1 AC016301, AL121990
S/G/Y/R/B/O NT_031728AL1219902265802802RH1033671734.59    1 AC016301, AL121990
S/G/Y/R/B/O NT_031728AL3549832266410783RH38217  12900.00  1 AL354983
S/G/Y/R/B/O NT_031728AL3549832266570003RH121211727.42    1 AL354983
S/G/Y/R/B/O NT_031728AL3548262267167293RH30714  12881.00  1 AL354826
S/G/Y/R/B/O NT_031728AL3548262267186523RH507441730.25  1896.001 AL354826
S/G/Y/R/B/O NT_031728AL6065012268975673          
S/G/Y/R/B/O NT_031728 - RH251861727.42    0AL117350, AC036234, AL117350, AL672289
S/G/Y/R/B/O NT_031728 - WI-15892    1896.601AC007198, AL359979, AC007198, AL359979
S/G/Y/R/B/O NT_031728 - SGC32540    1897.001AL592310, AL592310
S/G/Y/R/B/O NT_031728 - SGC34788    1897.101AL592148, AC026068, AL590088, AL592148
S/G/Y/R/B/O NT_031728 - WI-15617    1897.501AC021762, AC021762
S/G/Y/R/B/O NT_031728 - AFMB361YB5    1897.501AC034298, AL596330, AC012126, AC034298, AL596330
S/G/Y/R/B/O NT_031728 - WI-17070    1897.501AC099790, AC099790
S/G/Y/R/B/O NT_031728 - SGC30399    1897.501AL365438, AL390122, AC024998, AF198096, AL365438, AL390122
S/G/Y/R/B/O NT_031728 - SGC32093    1897.601AC099790, AC099790
S/G/Y/R/B/O NT_031728 - WI-19854    1897.601AL353689, AL353689
S/G/Y/R/B/O NT_031728 - SGC32477    1897.701AC092809, AC068290, AC092809
S/G/Y/R/B/O NT_031728 - WI-12823    1897.901AC092811, AC092811
S/G/Y/R/B/O NT_031728 - TIGR-A004U37    1897.901AC092811, AC092811
S/G/Y/R/B/O NT_031728 - SGC35104    1897.900AL117348, AC058782, AL117348


  NT_031728 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_031728 - D1S439    1898.001AC025060, AL356216, AC025060, AL356216, AL591380
S/G/Y/R/B/O NT_031728 - SGC32828    1898.001AL136378, AL136378
S/G/Y/R/B/O NT_031728 - SGC44321    1898.001AC044825, AL512343, AL592045, AC044825, AL512343, AL592045
S/G/Y/R/B/O NT_031728 - SGC30345    1898.001AL359742, AL359742, AL671974
S/G/Y/R/B/O NT_031728 - WI-13390    1898.001AC021762, AC073252, AL365444, AC021762, AC026277, AC073252, AL359982, AL365444
S/G/Y/R/B/O NT_031728 - TIGR-A004X13    1898.101AL139288, AL139288
S/G/Y/R/B/O NT_031728 - WI-1149    1899.601AL512343, AL512343