Home    Genome Browser    BLAT Search    Help
  Chromosome 1 - RH Maps - Single Contig
 

Chromosome 1 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_032954 NT_004350 NT_022058 NT_004321 NT_004547 NT_021917 NT_028054 NT_032970
NT_032967 NT_021937 NT_004488 NT_022041 NT_004873 NT_030584 NT_004572 NT_029218
NT_004610 NT_032979 NT_004391 NT_030571 NT_004782 NT_028053 NT_004538 NT_004511
NT_004852 NT_032963 NT_032971 NT_032972 NT_031724 NT_004386 NT_032978 NT_032977
NT_004424 NT_032976 NT_032965 NT_032973 NT_031689 NT_029223 NT_004641 NT_029865
NT_031737 NT_004636 NT_032948 NT_004464 NT_032953 NT_004483 NT_004302 NT_032960
NT_032956 NT_032974 NT_004902 NT_026943 NT_029231 NT_004658 NT_004686 NT_021979
NT_030565 NT_028050 NT_004308 NT_004623 NT_030567 NT_032957 NT_021977 NT_029860
NT_019273 NT_031697 NT_004754 NT_032961 NT_032975 NT_022052 NT_022071 NT_004434
NT_032962 NT_021907 NT_004441 NT_030577 NT_004858 NT_019291 NT_031708 NT_029226
NT_026945 NT_004982 NT_032952 NT_004668 NT_029874 NT_004487 NT_032958 NT_004599
NT_031716 NT_004671 NT_021909 NT_004416 NT_029862 NT_021905 NT_032947 NT_021877
NT_004612 NT_031718 NT_032950 NT_004525 NT_032955 NT_029863 NT_032951 NT_021953
NT_004861 NT_031696 NT_004908 NT_004559 NT_031728 NT_021973 NT_004753 NT_004433
NT_030561 NT_004836 NT_031685 NT_004771 NT_004734 NT_031700 NT_031719 NT_004536
NT_032964 NT_031732 NT_032966 NT_031730 NT_029870 NT_032969 NT_032968


  NT_021937
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021937AC01372889709791          
S/G/Y/R/B/O NT_021937AL69144989812611RH48713141.96    1 AL691449
S/G/Y/R/B/O NT_021937AL69144990161891RH26180141.96    1 AL691449
S/G/Y/R/B/O NT_021937AL69144990162221RH14260  1463.00  1 AL691449
S/G/Y/R/B/O NT_021937AL69144990165821RH63840141.96    1 AL691449
S/G/Y/R/B/O NT_021937AL69144990165851RH50274141.96  154.301 AL691449
S/G/Y/R/B/O NT_021937AL69144990165871RH63871132.73  11.601 AL691449
S/G/Y/R/B/O NT_021937AL69144990166001RH49937143.61    1 AL691449
S/G/Y/R/B/O NT_021937AL69144990166001WI-16255    14.101 AL691449
S/G/Y/R/B/O NT_021937AL69144990166001RH50040141.96    1 AL691449
S/G/Y/R/B/O NT_021937AL69144990166001WI-16324    125.701 AL691449
S/G/Y/R/B/O NT_021937AL69144990166421RH11792141.96    1 AL691449
S/G/Y/R/B/O NT_021937AL69144990167181RH11473141.96    1 AL691449
S/G/Y/R/B/O NT_021937AL69144990370851RH15907141.96    1 AL691449
S/G/Y/R/B/O NT_021937AL35714091878442RH12006141.96    1AC013728, AC013728, AL357140
S/G/Y/R/B/O NT_021937AL35714091879042RH14623  1463.00  1AC013728, AC013728, AL357140
S/G/Y/R/B/O NT_021937AL35714091884202RH78141141.96    1 AL357140
S/G/Y/R/B/O NT_021937AL35714091896752RH64194141.96  154.301AC013728, AC013728, AL357140
S/G/Y/R/B/O NT_021937AL35714092660502RH91273141.96    1AC013728, AC013728, AL357140
S/G/Y/R/B/O NT_021937AL35714092664562RH14660  1480.00  1AC013728, AC013728, AL357140
S/G/Y/R/B/O NT_021937AL35714093062662RH8768  1480.00  1 AL357140
S/G/Y/R/B/O NT_021937AL35714093062662RH104520133.57    1 AL357140
S/G/Y/R/B/O NT_021937AL35714093062662RH1769  1480.00  1 AL357140
S/G/Y/R/B/O NT_021937AL60396293121653          
S/G/Y/R/B/O NT_021937AL59063993384233          
S/G/Y/R/B/O NT_021937AL09684195105582WI-14873    154.001 AL096841, AP003163
S/G/Y/R/B/O NT_021937AL09684195105582RH642171771.97    1 AL096841, AP003163
S/G/Y/R/B/O NT_021937AL09684195196032RH64315141.851499.00  1 AL096841, AP003163
S/G/Y/R/B/O NT_021937AL09684195196032SGC30343    10.001 AL096841, AP003163
S/G/Y/R/B/O NT_021937AL09684195205092RH17272141.85    1 AL096841, AP003163
S/G/Y/R/B/O NT_021937AL09684195264652RH45100141.85    1AL358013, AL096841, AL358013, AP003163
S/G/Y/R/B/O NT_021937AL35801396384163RH79628141.75    1AL139424, AP003164, AL139424, AL358013, AP003164
S/G/Y/R/B/O NT_021937AL35801396456823RH64239143.611499.00  1AL139424, AP003164, AL139424, AL358013, AP003164
S/G/Y/R/B/O NT_021937AL35801396456823SGC30747    154.901AL139424, AP003164, AL139424, AL358013, AP003164
S/G/Y/R/B/O NT_021937AL35801396474413RH94196143.61    1AL139424, AL139424, AL358013
S/G/Y/R/B/O NT_021937AL35801396477263RH94028143.61    1AL139424, AP003164, AL139424, AL358013, AP003164
S/G/Y/R/B/O NT_021937AL35801396478643RH80337143.10    1AL139424, AP003164, AL139424, AL358013, AP003164
S/G/Y/R/B/O NT_021937AP00316496979011RH14634  1505.00  2AL139424, AP001098, AL139424, AP001098, AP003161, AP003164
S/G/Y/R/B/O NT_021937AL13942497208862RH1359  1508.00  1AP001098, AL139424, AP001098, AP003161
S/G/Y/R/B/O NT_021937AL13942497209012RH63919143.20  154.001AP001098, AL139424, AP001098, AP003161
S/G/Y/R/B/O NT_021937AL13942497209752RH9882143.51    1AP001098, AL139424, AP001098, AP003161
S/G/Y/R/B/O NT_021937AL13942497590582RH66785143.20    1AP001098, AL139424, AP001098, AP003161
S/G/Y/R/B/O NT_021937AL13942497591872RH3927018183.30    2AC009831, AC036167, AP001098, AP001333, AC009831, AC036167, AL139424, AP001098, AP001333, AP003161
S/G/Y/R/B/O NT_021937AL13942497592312RH70785143.20    1AP001098, AL139424, AP001098, AP003161
S/G/Y/R/B/O NT_021937AL13942497594042RH63772143.61    1AP001098, AL139424, AP001098, AP003161
S/G/Y/R/B/O NT_021937AL35495697960983RH79256143.61    1AP001098, AL354956, AP001098
S/G/Y/R/B/O NT_021937AL35495698007843RH70411143.61    1AP001098, AL162405, AL354956, AP001098, AP003162
S/G/Y/R/B/O NT_021937AL35495698364723SGC38258    140.301AL591403, AP001098, AL162405, AL354956, AL591403, AP001098, AP003162
S/G/Y/R/B/O NT_021937AL35495698364723RH5085310.00    1AL591403, AP001098, AL162405, AL354956, AL591403, AP001098, AP003162
S/G/Y/R/B/O NT_021937AL59140398535653D1S244    154.001 AL162405, AL591403, AP003162


  NT_021937 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021937AL59140398535653RH13385145.631508.00  1 AL162405, AL591403, AP003162
S/G/Y/R/B/O NT_021937AL59140398867403RH67799145.63    1 AL162405, AL591403, AP003162
S/G/Y/R/B/O NT_021937AL13942399700263RH12067147.85    1 AC022983, AL139423, AL365399
S/G/Y/R/B/O NT_021937AL139423100507113RH64291147.85  148.901 AL139423, AL365399
S/G/Y/R/B/O NT_021937AL157717100742593          
S/G/Y/R/B/O NT_021937AL031984100834163          
S/G/Y/R/B/O NT_021937AL358492102670363CHLC.ATA9B08    149.401 AL139253
S/G/Y/R/B/O NT_021937AL713997103346461          
S/G/Y/R/B/O NT_021937AP001098103405991RH14634  1505.00  2AL139424, AP003164, AL139424, AP001098, AP003161, AP003164
S/G/Y/R/B/O NT_021937AL109811103703133RH49835147.85  154.301AL713997, AJ300188, AL109811, AL713997
S/G/Y/R/B/O NT_021937AL109811103754143SGC34104    148.001AL713997, AJ300188, AL109811, AL713997
S/G/Y/R/B/O NT_021937AL109811103754143RH64314131.891612.00  1AL713997, AJ300188, AL109811, AL713997
S/G/Y/R/B/O NT_021937AL109811103999203RH70746149.58    1AL713997, AL109811, AL713997, M64231
S/G/Y/R/B/O NT_021937AL109811104147393RH78022149.58    1AL713997, AJ300188, AL109811, AL713997
S/G/Y/R/B/O NT_021937AL109811104258823RH64370149.58  154.301AL713997, AJ300188, AL109811, AL713997
S/G/Y/R/B/O NT_021937AL109811104258823RH14652  1612.00  1AL713997, AJ300188, AL109811, AL713997
S/G/Y/R/B/O NT_021937AL109811104517163RH63897149.58  149.801AL713997, AJ300188, AL109811, AL713997
S/G/Y/R/B/O NT_021937AL109811104524523RH8308  1606.00  1AL713997, AJ300188, AL109811, AL713997
S/G/Y/R/B/O NT_021937AL391561104771303RH46207149.58    1AL713997, AJ300188, AL359082, AL391561, AL713997
S/G/Y/R/B/O NT_021937AL049653105406883RH46072149.58    1 AJ300188, AL049653
S/G/Y/R/B/O NT_021937AL049653105968563RH47621153.42    1 AL049653, AL357135
S/G/Y/R/B/O NT_021937AL049653105980373RH45419149.58    1 AL049653, AL357135
S/G/Y/R/B/O NT_021937AL031291106184893RH78828149.58    1 AL031291, AL357135
S/G/Y/R/B/O NT_021937AL031291106331913RH45740149.58    1 AL031291, AL357135
S/G/Y/R/B/O NT_021937AL031291106429973RH25933151.41    1 AL031291, AL357135
S/G/Y/R/B/O NT_021937AL031291106446043RH49932149.58  154.301 AL031291, AL357135
S/G/Y/R/B/O NT_021937AL592314107305363          
S/G/Y/R/B/O NT_021937AL590989107720853RH49298147.75    1 AC016978, AL590989
S/G/Y/R/B/O NT_021937AL590989107720853RH30653  1580.00  1 AC016978, AL590989
S/G/Y/R/B/O NT_021937AL031735108510533RH64382149.58  149.801 AC016978, AL031735
S/G/Y/R/B/O NT_021937AL031731109935863RH50112149.58  147.401 AL031731, AL611948
S/G/Y/R/B/O NT_021937AL031731110022063RH104184149.58    1 AL031731, AL611948
S/G/Y/R/B/O NT_021937AL031731110069353RH64219149.58  146.801 AL031731
S/G/Y/R/B/O NT_021937AL031731110071673RH49845149.58  149.701 AL031731
S/G/Y/R/B/O NT_021937AL031731110072303RH25663151.41    1 AL031731
S/G/Y/R/B/O NT_021937AL031731110073213IB3322    154.301 AL031731, AL611948
S/G/Y/R/B/O NT_021937AL031731110196803RH80622147.85    1 AL031731, AL611948
S/G/Y/R/B/O NT_021937AL512423110612591          
S/G/Y/R/B/O NT_021937 - RH64696149.58    0AL031731, AL031731
S/G/Y/R/B/O NT_021937 - WI-8986    139.701AL391730, AL391730
S/G/Y/R/B/O NT_021937 - RH44136149.58    0  
S/G/Y/R/B/O NT_021937 - SGC35004    142.201AC025001, AC025001
S/G/Y/R/B/O NT_021937 - GCT3H01    143.501AC025001, AL021155, AC025001, AL021155
S/G/Y/R/B/O NT_021937 - SGC33684    147.600 AF294032
S/G/Y/R/B/O NT_021937 - WI-14635    148.001AL031277, AC074234, AL031277
S/G/Y/R/B/O NT_021937 - RH64435149.58  148.300  
S/G/Y/R/B/O NT_021937 - WI-14621    148.601AL359771, AL359771
S/G/Y/R/B/O NT_021937 - WI-4880    149.201AL031276, AL031276
S/G/Y/R/B/O NT_021937 - WI-14195    149.301AL358252, AL358252
S/G/Y/R/B/O NT_021937 - WI-13518    149.301AL357873, AL357873, AL359086


  NT_021937 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_021937 - UTR-9861    149.301AL357835, AC023251, AJ289159, AL355998, AL357835
S/G/Y/R/B/O NT_021937 - WI-11662    150.000  
S/G/Y/R/B/O NT_021937 - RH50253141.96  154.300AL691449, AL691449