Home    Genome Browser    BLAT Search    Help
  Chromosome 18 - RH Maps - Single Contig
 

Chromosome 18 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_011005 NT_011036 NT_030854 NT_025000 NT_024990 NT_024982 NT_011090 NT_025112
NT_011024 NT_030853 NT_010870 NT_025037 NT_033304 NT_019631 NT_010956 NT_010918
NT_010859 NT_028384 NT_024983 NT_031911 NT_011044 NT_033311 NT_010966 NT_010924
NT_030852 NT_010934 NT_025022 NT_010911 NT_024981 NT_010988 NT_028380 NT_010902
NT_033310 NT_024989 NT_033306 NT_033307 NT_010874 NT_033905 NT_030857 NT_025058
NT_010893 NT_011059 NT_011085 NT_033908 NT_033907 NT_025116 NT_010895 NT_033906
NT_033911 NT_033308 NT_024992 NT_033910 NT_033909 NT_025001 NT_010948 NT_033300
NT_025028 NT_010940 NT_025004 NT_028385 NT_025024 NT_024997 NT_024980 NT_024988
NT_033302 NT_010883 NT_010879


  NT_010966
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010966AP001451247586331          
S/G/Y/R/B/O NT_010966AC012588247741582RH1961918184.01    3AC004382, AC009052, AC018745, AC090206, AP001451, AP001492, AP002420, AC004382, AC009052, AC012588, AC018745, AC090206, AP001451, AP001492, AP002420
S/G/Y/R/B/O NT_010966AC012588247744972RH2635618216.91    2AC009052, AC018745, AC090206, AP001492, AP002420, AC009052, AC012588, AC018745, AC090206, AP001492, AP002420
S/G/Y/R/B/O NT_010966AC012588248152922WI-8480    18222.502AC018745, AC090206, AP001451, AC012588, AC018745, AC090206, AP001451
S/G/Y/R/B/O NT_010966AP001176248207251          
S/G/Y/R/B/O NT_010966AC018371250061993RH13885  18865.00  1AC000068, AC000068
S/G/Y/R/B/O NT_010966AC018371250268683WI-21214    18221.402AC010854, AC012269, AC097313, AP001176, AC010854, AC011968, AC012269, AC018371, AC097313, AP001176, AP001272, AP001275
S/G/Y/R/B/O NT_010966AC018371250273493RH1822918237.60    2AC010854, AC012269, AC097313, AP001176, AC010854, AC011968, AC012269, AC018371, AC097313, AP001176, AP001272, AP001275
S/G/Y/R/B/O NT_010966AC018371250279213RH2611518240.68    1AC010854, AC012269, AP001176, AC010854, AC011968, AC012269, AP001176, AP001275
S/G/Y/R/B/O NT_010966AC018371250281123RH8699  18842.00  1AC010854, AC012269, AP001176, AC010854, AC011968, AC012269, AC018371, AP001176, AP001275
S/G/Y/R/B/O NT_010966AC018371250282563RH1945  18852.00  1AC010854, AC012269, AP001176, AC010854, AC011968, AC012269, AC018371, AP001176, AP001275
S/G/Y/R/B/O NT_010966AC018371250285083RH37838  18865.00  1AC010854, AC012269, AP001176, AC010854, AC011968, AC012269, AC018371, AP001176, AP001275
S/G/Y/R/B/O NT_010966AC018371250305223WI-13598    18213.702AC010854, AC012269, AC008374, AC008639, AC010854, AC011968, AC012269, AC018371, AP001272, AP001275
S/G/Y/R/B/O NT_010966AC010854250436913          
S/G/Y/R/B/O NT_010966AC023575251317463RH3924718213.08    2AC012269, AC008639, AC012269, AC023575, AP001087, AP001272
S/G/Y/R/B/O NT_010966AC012269252716681          
S/G/Y/R/B/O NT_010966AC036167253060421          
S/G/Y/R/B/O NT_010966AC073209253086331          
S/G/Y/R/B/O NT_010966AC104367253369532          
S/G/Y/R/B/O NT_010966AC104956253496562          
S/G/Y/R/B/O NT_010966AC009831256136961RH3927018183.30    2AC036167, AL139424, AP001098, AP001333, AC009831, AC036167, AL139424, AP001098, AP001333, AP003161
S/G/Y/R/B/O NT_010966AC011825254294781          
S/G/Y/R/B/O NT_010966AC009293254633231          
S/G/Y/R/B/O NT_010966AC015563255132471          
S/G/Y/R/B/O NT_010966AP002434255193241          
S/G/Y/R/B/O NT_010966AC025018255195331          
S/G/Y/R/B/O NT_010966AP001333256170371          
S/G/Y/R/B/O NT_010966AC022960257189603RH32486  181048.0018265.701AP001333, AC022960, AP001333
S/G/Y/R/B/O NT_010966AC022960257189603RH5550818274.83    1AP001333, AC022960, AP001333
S/G/Y/R/B/O NT_010966AC022960258209473RH912229154.84    3AL138752, AL391500, AC022960, AC073598, AL138752, AL391500
S/G/Y/R/B/O NT_010966AC017100259522953WI-13684    18268.601AP001336, AC017100, AP001336, AP002474
S/G/Y/R/B/O NT_010966AC017100259785323RH1164518251.14    1AC079096, AP001336, AC017100, AC079096, AP001336, AP002474, M11518, M11844
S/G/Y/R/B/O NT_010966AC017100259785343RH5552118249.22  18259.901AC079096, AP001336, AC017100, AC079096, AP001336, AP002474, M11518, M11844
S/G/Y/R/B/O NT_010966AC079096260447521          
S/G/Y/R/B/O NT_010966AC021549262215473RH3926518288.69    1AC009717, AP001358, AC009717, AC021549, AP001106, AP001358
S/G/Y/R/B/O NT_010966AC021549262215813RH14138  181027.00  1AC009717, AP001358, AC009717, AC021549, AP001106, AP001358
S/G/Y/R/B/O NT_010966AC015532262507271          
S/G/Y/R/B/O NT_010966AP001336262899191          
S/G/Y/R/B/O NT_010966AP001358262915641          
S/G/Y/R/B/O NT_010966AC009717262948232          
S/G/Y/R/B/O NT_010966AC108138263763582          
S/G/Y/R/B/O NT_010966AC012417264570751RH5540518245.81  18264.301AC108138, AC012417, AC108138, AF293358, AP001808, AP002426
S/G/Y/R/B/O NT_010966AC012417265216501RH9390618247.98    1AC108138, AC012417, AC108138, AP001808, AP002426
S/G/Y/R/B/O NT_010966AC025212265769122RH33497  181017.0018268.101AC012417, AC012417, AC025212, AF293359, AP001808, AP002426
S/G/Y/R/B/O NT_010966AC016382266088803          
S/G/Y/R/B/O NT_010966AC016534267628681          
S/G/Y/R/B/O NT_010966AC090506268719452D18S56    18266.601 AC068180, AC090506, AP001794
S/G/Y/R/B/O NT_010966AC087506269141413          
S/G/Y/R/B/O NT_010966AC022174270251522D18S463    18244.501AC087506, AC087506
S/G/Y/R/B/O NT_010966AC022174270251522RH681  181038.00  1AC087506, AC087506


  NT_010966 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010966AC015766270407172          
S/G/Y/R/B/O NT_010966AC091317271691062          
S/G/Y/R/B/O NT_010966AC073211272742741          
S/G/Y/R/B/O NT_010966AC009872272752073          
S/G/Y/R/B/O NT_010966AC021382273986432          
S/G/Y/R/B/O NT_010966AC068408275456203          
S/G/Y/R/B/O NT_010966AC090403277135803WI-5480    18224.501AP001030, AP001103, AC090362, AC090403, AP001030, AP001103
S/G/Y/R/B/O NT_010966AC090403277339553RH1365918231.4218915.00  1AC022176, AP001103, AC022176, AC090362, AC090403, AP001103
S/G/Y/R/B/O NT_010966AC090403277660453AFMA081TC5    18218.701AC022176, AP001030, AP001103, AC007778, AC022176, AC090362, AC090403, AP001030, AP001103
S/G/Y/R/B/O NT_010966AC090403277683813RH31418  18912.00  1AC022176, AP001030, AP001103, AC007778, AC022176, AC090362, AC090403, AP001030, AP001103
S/G/Y/R/B/O NT_010966AC090403277683813RH1548918211.95    1AC022176, AP001030, AP001103, AC007778, AC022176, AC090362, AC090403, AP001030, AP001103
S/G/Y/R/B/O NT_010966AC022176278114662          
S/G/Y/R/B/O NT_010966AC090936279846833RH4762318239.13    1AP002402, AC090936, AP002402
S/G/Y/R/B/O NT_010966AP002402280027081          
S/G/Y/R/B/O NT_010966AP001030280057041          
S/G/Y/R/B/O NT_010966AP001103280092791          
S/G/Y/R/B/O NT_010966AC110015280144922          
S/G/Y/R/B/O NT_010966AC091143280337763          
S/G/Y/R/B/O NT_010966AC107878281672963          
S/G/Y/R/B/O NT_010966AC013660283097463          
S/G/Y/R/B/O NT_010966AC084701284740702          
S/G/Y/R/B/O NT_010966AP001200286130781          
S/G/Y/R/B/O NT_010966AC013630286738313RH9022  181071.00  1AC015563, AP001200, AP002434, AC013630, AC015563, AP001151, AP001200, AP002434
S/G/Y/R/B/O NT_010966AC013630287171083RH38089  181066.00  1AC015563, AP001200, AP002434, AC013630, AC015563, AP001151, AP001200, AP002434
S/G/Y/R/B/O NT_010966AC013630287212593RH5553818247.79  18247.701AC015563, AP001200, AP002434, AC013630, AC015563, AP001151, AP001200, AP002434
S/G/Y/R/B/O NT_010966AC013630287398683RH1354718251.04181066.00  1AC015563, AC013630, AC015563, AP001151
S/G/Y/R/B/O NT_010966AC013630287446983WI-22103    18268.101AC015563, AP001200, AC013630, AC015563, AP001200
S/G/Y/R/B/O NT_010966AC021224288752803RH14476  181084.0018268.701 AC021224, AC025023
S/G/Y/R/B/O NT_010966AC009835288767432          
S/G/Y/R/B/O NT_010966AC025887290215602          
S/G/Y/R/B/O NT_010966AC072038291031441          
S/G/Y/R/B/O NT_010966AC012123291273212          
S/G/Y/R/B/O NT_010966AC090371293579572AFMB351YE9    18267.301 AC090371, AP001123
S/G/Y/R/B/O NT_010966AC090371293912172RH9225918273.24    1AC100845, AC090371, AC100845, AP001123
S/G/Y/R/B/O NT_010966AC100845294103713          
S/G/Y/R/B/O NT_010966AC025888295137152          
S/G/Y/R/B/O NT_010966AC023203297293341          
S/G/Y/R/B/O NT_010966AC015933300732633RH5551718223.3218935.0018243.101 AC015933, AC023440, AC090404, AP001105, AP001145, AP001900
S/G/Y/R/B/O NT_010966AC015933300733383RH1657118226.31    1 AC015933, AC023440, AC090404, AP001105, AP001145, AP001900
S/G/Y/R/B/O NT_010966AC006249301403183RH32445  18931.0018228.501 AC006249, AC023440, AP001145, AP001900
S/G/Y/R/B/O NT_010966AC069494303257282          
S/G/Y/R/B/O NT_010966AC100794304658243          
S/G/Y/R/B/O NT_010966AC027141306461693RH5555718223.94  18230.101AC090365, AC027141, AC090365, AP001127
S/G/Y/R/B/O NT_010966AC027141306479253RH670213157.89    1AC090365, AC027141, AC090365, AP001127
S/G/Y/R/B/O NT_010966AC090365306514582          
S/G/Y/R/B/O NT_010966AC023932307252472          
S/G/Y/R/B/O NT_010966AC091577309225903WI-9846    18232.901AC015963, AC015963, AC068262, AC091577, AP001108
S/G/Y/R/B/O NT_010966AC015963310049083          
S/G/Y/R/B/O NT_010966AC090349311396543CHLC.GATA64H04    18240.901AC105245, AC105245
S/G/Y/R/B/O NT_010966AC090349311414903RH9419918237.52    1AC105245, AP001396, AC007997, AC015964, AC090349, AC105245, AP001322, AP001396


  NT_010966 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010966AC105245311854193          
S/G/Y/R/B/O NT_010966AC074237312970022          
S/G/Y/R/B/O NT_010966AC062025314452081          
S/G/Y/R/B/O NT_010966AC091321314517411          
S/G/Y/R/B/O NT_010966AP001396314884741          
S/G/Y/R/B/O NT_010966 - WI-22219    18222.201AC007996, AC010964, AC018745, AC090206, AP001096, AP001197, AC007996, AC010964, AC018745, AC090206, AP001096, AP001197
S/G/Y/R/B/O NT_010966 - WI-3180    18245.202AC007996, AC018745, AC090206, AP001096, AP001197, AC007996, AC018745, AC090206, AP001096, AP001197
S/G/Y/R/B/O NT_010966 - AFMC014WF9    18246.701AP001121, AP001121
S/G/Y/R/B/O NT_010966 - SGC35446    18247.201AC021302, AC027229, AC091021, AP002410, AC021302, AC027229, AC091021, AP002410
S/G/Y/R/B/O NT_010966 - AFMA131XH9    18264.801AC090229, AC090370, AP001394, AP002508, AC090229, AC090370, AP001394, AP002508
S/G/Y/R/B/O NT_010966 - WI-13334    18265.301AC068506, AC068506, AP001270, AP002411
S/G/Y/R/B/O NT_010966 - IB641    18265.601AC068506, AC068506, AP001270, AP002411
S/G/Y/R/B/O NT_010966 - CHLC.GATA85B07    18266.101AC036180, AC090220, AP001837, AC036180, AC090220, AP001837
S/G/Y/R/B/O NT_010966 - WI-5115    18266.401AF215850, AF215850