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  Chromosome 16 - RH Maps - Single Contig
 

Chromosome 16 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033286 NT_033283 NT_010384 NT_031905 NT_033285 NT_010419 NT_010393 NT_033288
NT_033281 NT_030837 NT_010552 NT_010530 NT_024776 NT_010441 NT_010591 NT_033284
NT_010604 NT_010589 NT_024802 NT_024812 NT_024779 NT_033282 NT_024773 NT_010505
NT_010493 NT_010498 NT_034002 NT_033291 NT_010463 NT_033904 NT_034001 NT_010546
NT_033289 NT_010480 NT_031902 NT_030154 NT_010635 NT_010478 NT_010494 NT_024797
NT_010422 NT_024767 NT_033290 NT_028371 NT_024788 NT_019609 NT_033287 NT_010404
NT_010542


  NT_010463
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010463AC092121589907821          
S/G/Y/R/B/O NT_010463AC018552590750112RH1174216363.18    1 AC018552
S/G/Y/R/B/O NT_010463AC012181591692043RH38649  162449.00  1 AC012181
S/G/Y/R/B/O NT_010463AC012181591693263RH6993016372.98    1 AC012181
S/G/Y/R/B/O NT_010463AC012181591716833RH37982  162449.00  1 AC012181
S/G/Y/R/B/O NT_010463AC012181591744703RH6836916361.63    1 AC012181
S/G/Y/R/B/O NT_010463AC012181592379963RH7600616353.74    1AC010550, AC010550, AC012181
S/G/Y/R/B/O NT_010463AC012181592381163RH7093816361.63    1AC010550, AC010550, AC012181
S/G/Y/R/B/O NT_010463AC010550592678851RH1719  162466.00  1AC012181, AB034990, AC010550, AC012181
S/G/Y/R/B/O NT_010463AC010550592680691RH1737816372.00    1AC012181, AB034990, AC010550, AC012181
S/G/Y/R/B/O NT_010463AC010550593082521RH7620616373.47    1AC020769, AC023825, AC010550, AC020769, AC023825, U71188
S/G/Y/R/B/O NT_010463AC010550593082661RH5464516373.25  16271.401AC020769, AC023825, AC010550, AC020769, AC023825, U71188
S/G/Y/R/B/O NT_010463AC020769593327211          
S/G/Y/R/B/O NT_010463AC023825593348251          
S/G/Y/R/B/O NT_010463AC009090594173993RH5482716370.60  16272.601AC010550, AC020769, AC023825, AC009090, AC010550, AC020769, AC023825
S/G/Y/R/B/O NT_010463AC009090594173993RH1987  162483.00  1AC010550, AC020769, AC023825, AC009090, AC010550, AC020769, AC023825
S/G/Y/R/B/O NT_010463AC009090594791873RH2610316371.89    1AC020769, AC023825, AC009090, AC020769, AC023825
S/G/Y/R/B/O NT_010463AC009090594818503RH3677316363.59    1AC020769, AC023825, AC009090, AC020769, AC023825
S/G/Y/R/B/O NT_010463AC009090594865463RH5478516361.63    1AC023825, AC009090, AC023825
S/G/Y/R/B/O NT_010463AC009090594865463IB53    16228.401AC023825, AC009090, AC023825
S/G/Y/R/B/O NT_010463AC009090595121263RH5473016361.63162483.00  1AC023825, AC009090, AC023825
S/G/Y/R/B/O NT_010463AC009090595121263SGC34581    16227.601AC023825, AC009090, AC023825
S/G/Y/R/B/O NT_010463AC009090595740273RH6805116361.63    1 AC009090
S/G/Y/R/B/O NT_010463AC108081595866133RH7535116362.87    1AC009090, AC023825, AC009090, AC023825, AC108081
S/G/Y/R/B/O NT_010463AC108081595897193RH5454916371.35  16273.501AC009090, AC009090, AC108081
S/G/Y/R/B/O NT_010463AC108081595900833RH9114116364.20    1AC009090, AC009090, AC108081
S/G/Y/R/B/O NT_010463AC009052597169683RH8644016370.21    1AP001492, AC009052, AP001492
S/G/Y/R/B/O NT_010463AC009052597170673RH1038416365.90    1AC004382, AP001492, AP002420, AC004382, AC009052, AP001492, AP002420
S/G/Y/R/B/O NT_010463AC009052597185773RH6797616371.52    1AC004382, AP001492, AP002420, AC004382, AC009052, AP001492, AP002420
S/G/Y/R/B/O NT_010463AC009052597187113RH7960816369.04    1AC004382, AP001492, AP002420, AC004382, AC009052, AP001492, AP002420
S/G/Y/R/B/O NT_010463AC009052597495483RH8076116372.39    1AP001492, AP002420, AC009052, AP001492, AP002420
S/G/Y/R/B/O NT_010463AC009052597495563RH6653916373.25    1AC004382, AP001492, AP002420, AC004382, AP001492, AP002420
S/G/Y/R/B/O NT_010463AC009052597619423RH2635618216.91    2AC012588, AC018745, AC090206, AP001492, AP002420, AC009052, AC012588, AC018745, AC090206, AP001492, AP002420
S/G/Y/R/B/O NT_010463AC009052597619673RH1645916365.80    1AC004382, AP001492, AP002420, AC004382, AC009052, AP001492, AP002420
S/G/Y/R/B/O NT_010463AC009052597623033RH1961918184.01    3AC004382, AC012588, AC018745, AC090206, AP001451, AP001492, AP002420, AC004382, AC009052, AC012588, AC018745, AC090206, AP001451, AP001492, AP002420
S/G/Y/R/B/O NT_010463AC009052597937843RH6966216362.56    1AC004382, AP001492, AP002420, AC004382, AC009052, AP001492, AP002420
S/G/Y/R/B/O NT_010463AC009052597939183RH7852316373.19    1AC004382, AP001492, AP002420, AC004382, AC009052, AP001492, AP002420
S/G/Y/R/B/O NT_010463AC009052597946043RH1782716362.56    1AC004382, AP001492, AC004382, AC009052, AP001492
S/G/Y/R/B/O NT_010463AC009052598051313RH8873  162492.00  1AC004382, AP002420, AC004382, AC009052, AP002420
S/G/Y/R/B/O NT_010463AC009052598052763RH397531252.79    1AC004382, AC004382, AC009052
S/G/Y/R/B/O NT_010463AC009052598055213RH7839616373.14    1AC004382, AC004382, AC009052
S/G/Y/R/B/O NT_010463AC009052598057723RH1003016363.18    1AC004382, AC004382, AC009052
S/G/Y/R/B/O NT_010463AC009052598292823RH4955516365.80162501.00  1AC004382, AC004382, AC009052
S/G/Y/R/B/O NT_010463AC004382598365383          
S/G/Y/R/B/O NT_010463AC027349599018062          
S/G/Y/R/B/O NT_010463AP001492599029961          
S/G/Y/R/B/O NT_010463AP002420599055461          
S/G/Y/R/B/O NT_010463AC092118599900413RH9893516373.19    1AC018552, AC018552, AC092118
S/G/Y/R/B/O NT_010463AC092118600157723RH9192216371.42    1 AC092118, AC092285
S/G/Y/R/B/O NT_010463AC092118600171483RH10309216365.90    1 AC092118, AC092285


  NT_010463 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010463AC092118600401763RH7487016371.67    1 AC009128, AC092118
S/G/Y/R/B/O NT_010463AC092118600494423RH5454716367.61    1 AC009128, AC092118, AC092285
S/G/Y/R/B/O NT_010463AC092118600494423WI-17703    16228.001 AC009128, AC092118, AC092285
S/G/Y/R/B/O NT_010463AC010543602177803RH32449  162524.00  1AC012182, AC009128, AC010543, AC012182
S/G/Y/R/B/O NT_010463AC010543602177803SGC32528    16214.101AC012182, AC009128, AC010543, AC012182
S/G/Y/R/B/O NT_010463AC010543602535183RH8091616374.17    1AC012182, AC010543, AC012182
S/G/Y/R/B/O NT_010463AC012182602803172RH2609216372.82    1 AC012182
S/G/Y/R/B/O NT_010463AC012182603043042RH8009516369.46    1 AC012182
S/G/Y/R/B/O NT_010463AC026771603717573RH1202216366.60    1 AC026771
S/G/Y/R/B/O NT_010463AC026771604159513RH5488916373.58  16274.601AC009107, AC009107, AC026771
S/G/Y/R/B/O NT_010463AC026771604159633RH2073  162532.00  1AC009107, AC009107, AC026771
S/G/Y/R/B/O NT_010463AC026771604178663RH1981  162540.00  1AC009107, AC009107, AC026771
S/G/Y/R/B/O NT_010463AC026771604179053RH5459516373.14  16274.001AC009107, AC009107, AC026771
S/G/Y/R/B/O NT_010463AC026771604216353RH9876616363.18    1AC009107, AC009107, AC026771
S/G/Y/R/B/O NT_010463AC009107605380153RH10371016369.06    1 AC009107
S/G/Y/R/B/O NT_010463AC009107605385523RH9834116369.06    1 AC009107
S/G/Y/R/B/O NT_010463AC009107605413643RH6955416368.96    1 AC009107
S/G/Y/R/B/O NT_010463AC084063605946202          
S/G/Y/R/B/O NT_010463AC009118606624162RH4875816374.11    1AC084063, AC009118, AC084063
S/G/Y/R/B/O NT_010463AC009118606631982RH5471116371.63  16276.701AC084063, AC009118, AC084063
S/G/Y/R/B/O NT_010463AC010287607701832RH5450316374.82  16276.601AC009118, AC068659, AB044947, AC009118, AC010287, AC068659
S/G/Y/R/B/O NT_010463AC010287607704102WI-13157    16274.001AC009118, AC068659, AB044947, AC009118, AC010287, AC068659
S/G/Y/R/B/O NT_010463AC010287607705252RH6637516390.94    1AC009118, AC068659, AB044947, AC009118, AC010287, AC068659
S/G/Y/R/B/O NT_010463AC010287607706192RH2494516406.44    1AC009118, AC068659, AB044947, AC009118, AC010287, AC068659
S/G/Y/R/B/O NT_010463AC010287607774222RH3595116374.65    1AC009118, AC068659, AC009118, AC010287, AC068659
S/G/Y/R/B/O NT_010463AC010287607775242RH1596116369.78    1AC009118, AC068659, AC009118, AC010287, AC068659
S/G/Y/R/B/O NT_010463AC010287607778392RH4188916372.33    1AC009118, AC068659, AC009118, AC010287, AC068659
S/G/Y/R/B/O NT_010463AC010287607781822RH5448916374.11  16278.001AC009118, AC009118, AC010287
S/G/Y/R/B/O NT_010463AC010287607782122RH5448316370.28    1AC009118, AC068659, AC009118, AC010287, AC068659
S/G/Y/R/B/O NT_010463AC010287607782122TIGR-A002K05    16221.301AC009118, AC068659, AC009118, AC010287, AC068659
S/G/Y/R/B/O NT_010463AC010287607782822RH988116369.46    1AC009118, AC068659, AC009118, AC010287, AC068659
S/G/Y/R/B/O NT_010463AC068659608118722RH6907816371.35    1AC010287, AC010287, AC068659
S/G/Y/R/B/O NT_010463AC068659608345902RH7043216369.46    1AC010287, AC010287, AC068659
S/G/Y/R/B/O NT_010463AC068659608346542RH2555216402.68    1AC010287, AC010287, AC068659
S/G/Y/R/B/O NT_010463AC068659609230582RH7033916373.58    2AC009164, AC010287, AC012183, AC104130, AC009164, AC010287, AC012183, AC068659, AC104130
S/G/Y/R/B/O NT_010463AC068659609242512RH8014016371.46    2AC009164, AC010287, AC012183, AC104130, AC009164, AC010287, AC012183, AC068659, AC104130
S/G/Y/R/B/O NT_010463AC068659609243422RH9825616370.39    2AC009164, AC010287, AC012183, AC104130, AC009164, AC010287, AC012183, AC068659, AC104130
S/G/Y/R/B/O NT_010463AC012183609663422RH1694816371.74    2AC009164, AC104130, AC009164, AC012183, AC104130
S/G/Y/R/B/O NT_010463AC009164609306091          
S/G/Y/R/B/O NT_010463AC092378611510273RH31773  18502.00  1AC012323, AC012323, AC092378
S/G/Y/R/B/O NT_010463AC012323612436713RH5487316373.04    1 AC012323
S/G/Y/R/B/O NT_010463AC012323612436713WI-18063    16225.201 AC012323
S/G/Y/R/B/O NT_010463AC106793613407191          
S/G/Y/R/B/O NT_010463AC009147615545863GCT14B11    16212.401AC040163, AC009147, AC040163, AC040172
S/G/Y/R/B/O NT_010463AC040163615944713          
S/G/Y/R/B/O NT_010463AC040171617957043RH31375  162606.00  1AC026457, AC022914, AC026457, AC040171
S/G/Y/R/B/O NT_010463AC026457618495943          
S/G/Y/R/B/O NT_010463AC092350619634733          
S/G/Y/R/B/O NT_010463AC009069622139493WI-10708    16281.601AC009094, AC009069, AC009094
S/G/Y/R/B/O NT_010463AC009094623862933RH10433116407.40    1 AC009094


  NT_010463 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010463AC018554623964713          
S/G/Y/R/B/O NT_010463AC009081626805153RH1557716377.37162655.00  1 AC009081
S/G/Y/R/B/O NT_010463AC012105627473651          
S/G/Y/R/B/O NT_010463AC018555627537552          
S/G/Y/R/B/O NT_010463AC009080628482183          
S/G/Y/R/B/O NT_010463AC009156630263183          
S/G/Y/R/B/O NT_010463AC009169631267973          
S/G/Y/R/B/O NT_010463AC026473632370683          
S/G/Y/R/B/O NT_010463AC097275632984663          
S/G/Y/R/B/O NT_010463AC040166634396753          
S/G/Y/R/B/O NT_010463AC026475635845863WI-4823    16292.701AC016647, AC016647, AC026475
S/G/Y/R/B/O NT_010463AC016647635992803          
S/G/Y/R/B/O NT_010463AC092136636693671          
S/G/Y/R/B/O NT_010463AC009040636740942          
S/G/Y/R/B/O NT_010463AC092371636792673          
S/G/Y/R/B/O NT_010463AC092125638422181          
S/G/Y/R/B/O NT_010463AC010652639397121RH8883  162674.00  1AC092129, AC010652, AC092129
S/G/Y/R/B/O NT_010463AC092129638601151RH5450916379.65  16281.501AC010652, AC010652, AC092129
S/G/Y/R/B/O NT_010463AC092129638602091RH2583116375.80    1AC010652, AC010652, AC092129
S/G/Y/R/B/O NT_010463AC092129639606911RH5461616374.54  16273.801AC010652, AC010652, AC092129
S/G/Y/R/B/O NT_010463AC092129639606911RH32372  162686.00  1AC010652, AC010652, AC092129
S/G/Y/R/B/O NT_010463AC012174641440673WI-5943    16283.901AC040161, AC012174, AC040161
S/G/Y/R/B/O NT_010463AC040161641972203RH5473116381.78  16283.201 AC040161
S/G/Y/R/B/O NT_010463 - RH10207216373.25    0AC007342, AC007345, AC007342, AC007345
S/G/Y/R/B/O NT_010463 - RH10224216372.93    0  
S/G/Y/R/B/O NT_010463 - RH1595416372.93    2AC007347, AC007347, AC040164, AC072030
S/G/Y/R/B/O NT_010463 - RH1636616371.96    1AC026461, AC106779, AC026461, AC106779
S/G/Y/R/B/O NT_010463 - RH2562516373.63    1AC009155, AC092140, AC009155, AC092140
S/G/Y/R/B/O NT_010463 - RH2610816373.63    2AC092140, AL158075, AC016084, AC092140, AL158075
S/G/Y/R/B/O NT_010463 - RH4655216373.63    1AP000936, AP000936
S/G/Y/R/B/O NT_010463 - RH4749016373.25    0  
S/G/Y/R/B/O NT_010463 - RH5448716373.58    1AC007602, AC020766, AC007499, AC007602, AC020766
S/G/Y/R/B/O NT_010463 - RH5451116372.17    1AC009102, AC022161, AC092140, AC009102, AC016084, AC022161, AC092140
S/G/Y/R/B/O NT_010463 - RH5451716374.60    1AC007728, AC007728
S/G/Y/R/B/O NT_010463 - RH5455516379.36  16281.600AC010652, AC092125, AC092129, AC010652, AC092125, AC092129
S/G/Y/R/B/O NT_010463 - RH5461016373.47    1AC007608, AC007608, AJ303140
S/G/Y/R/B/O NT_010463 - RH5463216369.89    1AC026461, AC106779, AC026461, AC106779
S/G/Y/R/B/O NT_010463 - RH5470416373.25    1AC007336, AC007336, AC012345, AC092352
S/G/Y/R/B/O NT_010463 - RH5476316373.63    1AC009155, AC092140, AC009155, AC092140
S/G/Y/R/B/O NT_010463 - RH6567516370.50    0  
S/G/Y/R/B/O NT_010463 - RH6671616372.93    1AC007342, AC007342
S/G/Y/R/B/O NT_010463 - RH6839416372.93    1AC009102, AC022161, AC092140, AC009102, AC016084, AC022161, AC092140
S/G/Y/R/B/O NT_010463 - RH7094916363.38    0AC026461, AC026461
S/G/Y/R/B/O NT_010463 - RH7138616370.00    1AC009102, AC022161, AC092140, AC009102, AC016084, AC022161, AC092140
S/G/Y/R/B/O NT_010463 - RH7508716372.50    1AC009155, AC009155
S/G/Y/R/B/O NT_010463 - RH7618916369.78    1AC026461, AC106779, AC026461, AC106779
S/G/Y/R/B/O NT_010463 - RH8087116372.28    1AC026461, AC106779, AL109627, AC026461, AC106779, AL109627
S/G/Y/R/B/O NT_010463 - RH9140116373.63    0  
S/G/Y/R/B/O NT_010463 - RH9411316372.93    1AC007495, AC040168, AC007495, AC018605, AC040168
S/G/Y/R/B/O NT_010463 - RH9840116373.89    0  


  NT_010463 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010463 - RH9888016373.25    1AC007345, AC079416, AC007345, AC079416