Chromosome 16 - RH Maps - Single Contig

Chromosome 16 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033286	NT_033283	NT_010384	NT_031905	NT_033285	NT_010419	NT_010393	NT_033288
NT_033281	NT_030837	NT_010552	NT_010530	NT_024776	NT_010441	NT_010591	NT_033284
NT_010604	NT_010589	NT_024802	NT_024812	NT_024779	NT_033282	NT_024773	NT_010505
NT_010493	NT_010498	NT_034002	NT_033291	NT_010463	NT_033904	NT_034001	NT_010546
NT_033289	NT_010480	NT_031902	NT_030154	NT_010635	NT_010478	NT_010494	NT_024797
NT_010422	NT_024767	NT_033290	NT_028371	NT_024788	NT_019609	NT_033287	NT_010404
NT_010542

NT_024776

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_024776	AC002990	20330233	3
S/G/Y/R/B/O	NT_024776	AC021089	20475611	3	AFMB354YF9					16	97.80	1		AC021089, AL139235
S/G/Y/R/B/O	NT_024776	AC092132	20552012	3	RH74423	16	189.02					1		AC092132, AL139235
S/G/Y/R/B/O	NT_024776	AC106796	20734964	1	WI-2845					16	99.50	1		AC106796
S/G/Y/R/B/O	NT_024776	AC106796	20754442	1	RH70614	16	197.07					1
S/G/Y/R/B/O	NT_024776	AC106796	20776398	1	RH14084			16	1076.00			1		AC106796
S/G/Y/R/B/O	NT_024776	AC106796	20802855	1	WI-3346					16	95.40	1		AC106796
S/G/Y/R/B/O	NT_024776		-		RH10002	16	167.28					2	AC009167, AC097313,	AC009167, AC097313
S/G/Y/R/B/O	NT_024776		-		SGC34612					16	57.50	1	AC007220,	AC007220
S/G/Y/R/B/O	NT_024776		-		RH103419	16	167.48					1	AC025778, U91318,	AC025778, U91318
S/G/Y/R/B/O	NT_024776		-		RH103722	16	182.91					0
S/G/Y/R/B/O	NT_024776		-		RH104193	16	181.49					1	AC025277,	AC025277
S/G/Y/R/B/O	NT_024776		-		RH104407	16	113.50					1	AC012626, AC040173,	AC012626, AC040173
S/G/Y/R/B/O	NT_024776		-		RH10584	16	161.74					0
S/G/Y/R/B/O	NT_024776		-		RH10955	16	176.25					1	AC025778, U91318,	AC025778, U91318
S/G/Y/R/B/O	NT_024776		-		RH10970	16	183.53					1	AC002550,	AC002550
S/G/Y/R/B/O	NT_024776		-		RH11780	16	170.71					0
S/G/Y/R/B/O	NT_024776		-		RH13301	16	185.47					2	AC099518, AC099523,	AC099518, AC099523
S/G/Y/R/B/O	NT_024776		-		RH15039	16	176.25					1	AF001548,	AF001548
S/G/Y/R/B/O	NT_024776		-		RH16402	16	177.06					3	AC002045, AC008785, AC020757, AC027275,	AC002045, AC008785, AC020757, AC027275
S/G/Y/R/B/O	NT_024776		-		RH16453	16	162.98					0
S/G/Y/R/B/O	NT_024776		-		RH16576	16	162.10					1	U91321,	U91321
S/G/Y/R/B/O	NT_024776		-		RH17033	16	163.82					1	AC010333,	AC010333
S/G/Y/R/B/O	NT_024776		-		RH17413	16	176.25					1	AC002039, AC010488,	AC002039, AC010488, L20967
S/G/Y/R/B/O	NT_024776		-		RH17483	16	173.51					1	AC026401, AF001548,	AC026401, AF001548
S/G/Y/R/B/O	NT_024776		-		RH17839	16	185.37					1	AC004131, AC027130,	AC004131, AC027130
S/G/Y/R/B/O	NT_024776		-		RH17864	16	163.78					1		AC009048, AC010654
S/G/Y/R/B/O	NT_024776		-		RH54571	16	185.37			16	57.90	1	AC002550,	AC002550
S/G/Y/R/B/O	NT_024776		-		RH25985	16	185.47					1	AC003108,	AC003108
S/G/Y/R/B/O	NT_024776		-		WI-15395					16	58.00	0
S/G/Y/R/B/O	NT_024776		-		RH26113	16	168.69					1	AC010333,	AC010333
S/G/Y/R/B/O	NT_024776		-		WI-17616					16	58.00	0		AC087190
S/G/Y/R/B/O	NT_024776		-		RH26292	16	183.53					1	AC099518,	AC099518
S/G/Y/R/B/O	NT_024776		-		SGC35460					16	58.70	0
S/G/Y/R/B/O	NT_024776		-		RH26482	16	164.14					2	AC020757, U91318,	AC020757, U91318
S/G/Y/R/B/O	NT_024776		-		RH26935	16	118.37					1	AC007613, AC007616,	AC007613, AC007616
S/G/Y/R/B/O	NT_024776		-		RH28529	16	164.45					1	AC009167,	AC009167
S/G/Y/R/B/O	NT_024776		-		RH36885	16	183.53					1	AC099518,	AC099518
S/G/Y/R/B/O	NT_024776		-		RH41929	16	162.54					1	AC010401,	AC010401
S/G/Y/R/B/O	NT_024776		-		RH42386	16	181.49			16	58.80	1	AC004020, AC091489,	AC004020, AC091489
S/G/Y/R/B/O	NT_024776		-		RH42741	16	133.48					1		U95742
S/G/Y/R/B/O	NT_024776		-		WI-4271					16	59.20	1	AC099489,	AC099489
S/G/Y/R/B/O	NT_024776		-		RH47514	16	114.25					0
S/G/Y/R/B/O	NT_024776		-		WI-16861					16	59.40	1	AC007220,	AC007220
S/G/Y/R/B/O	NT_024776		-		RH48006	16	181.49					1	AC009152, AC109495,	AC009152, AC109495
S/G/Y/R/B/O	NT_024776		-		WI-13943					16	59.50	0	AC007598,	AC007598, AC007612
S/G/Y/R/B/O	NT_024776		-		RH48339	16	181.49					0
S/G/Y/R/B/O	NT_024776		-		SGC35050					16	60.20	1	AC007226, AC007613,	AC007226, AC007613, AC010654
S/G/Y/R/B/O	NT_024776		-		RH48694	16	168.26					1	AC026008, AC109446,	AC026008, AC109446
S/G/Y/R/B/O	NT_024776		-		AFMA134VC9					16	61.70	1	AC092365,	AC037438, AC092365

NT_024776 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_024776	-	RH48705	16	165.62			2	AC009167, AC097313,	AC009167, AC097313
S/G/Y/R/B/O	NT_024776	-	RH48839	16	183.53			1	AC002550,	AC002550
S/G/Y/R/B/O	NT_024776	-	RH48912	16	168.26			1	AC091489, AC092137,	AC091489, AC092137
S/G/Y/R/B/O	NT_024776	-	RH48960	16	161.98			1	AC007613, AC007616,	AC007613, AC007616
S/G/Y/R/B/O	NT_024776	-	RH54475	16	161.29	16	61.80	0	AC007598,	AC007598, AC007612
S/G/Y/R/B/O	NT_024776	-	WI-9382			16	61.80	1	AC092365,	AC092365
S/G/Y/R/B/O	NT_024776	-	CHLC.GCT3B11			16	64.50	1	AC009134,	AC009134, AC012628, U91325
S/G/Y/R/B/O	NT_024776	-	SGC32705			16	67.90	1	AC010333,	AC010333, AC068151
S/G/Y/R/B/O	NT_024776	-	WI-5195			16	70.10	1	AC012626, AC040173,	AC012626, AC040173
S/G/Y/R/B/O	NT_024776	-	RH54519	16	183.53	16	70.30	1	AC002550,	AC002550
S/G/Y/R/B/O	NT_024776	-	SGC34336			16	70.80	1	AC010333,	AC010333, AC068151
S/G/Y/R/B/O	NT_024776	-	RH54527	16	184.15	16	70.90	2	AC020716, AC026472,	AC020716, AC025289, AC026472
S/G/Y/R/B/O	NT_024776	-	RH54550	16	185.37	16	71.00	1	AC099518,	AC099518
S/G/Y/R/B/O	NT_024776	-	RH54561	16	161.49	16	71.20	2	AC092365, U95737,	AC009172, AC092365, U95737
S/G/Y/R/B/O	NT_024776	-	RH54570	16	183.53	16	72.50	1	AC002550,	AC002550
S/G/Y/R/B/O	NT_024776	-	RH54583	16	116.77			1	AC007216, AC007226,	AC007216, AC007226, AC009048, AC010654, U95742
S/G/Y/R/B/O	NT_024776	-	RH54606	16	183.53	16	72.70	1	U91321,	U91321
S/G/Y/R/B/O	NT_024776	-	CHLC.GATA42E11			16	74.00	1	AC002492,	AC002492
S/G/Y/R/B/O	NT_024776	-	RH54607	16	170.28	16	80.80	1	AF001548,	AF001548
S/G/Y/R/B/O	NT_024776	-	RH54620	16	115.11			1	AC012626, AC040173,	AC012626, AC040173
S/G/Y/R/B/O	NT_024776	-	WI-5644			16	86.20	1	AC004020, AC091489,	AC004020, AC091489
S/G/Y/R/B/O	NT_024776	-	RH54623	16	185.37	16	86.60	1	AC004131, AC027130,	AC004131, AC027130
S/G/Y/R/B/O	NT_024776	-	RH54676	16	166.06	16	86.80	3	AC002039, AC002039, AC009065, AC010488, AC040158, AC092137, L39891,	AC002039, AC002039, AC009065, AC010488, AC012171, AC040158, AC092137, L39891
S/G/Y/R/B/O	NT_024776	-	RH54690	16	113.47			1	AC007220,	AC007220
S/G/Y/R/B/O	NT_024776	-	AFM347TH9			16	88.40	1	AC020926,	AC020926
S/G/Y/R/B/O	NT_024776	-	RH54706	16	185.47	16	88.40	1	AC004131, AC027130,	AC004131, AC027130
S/G/Y/R/B/O	NT_024776	-	RH54728	16	183.53	16	88.50	1	AC003108, U91321,	AC003108, U91321
S/G/Y/R/B/O	NT_024776	-	RH54745	16	167.68	16	88.80	1	AC026401, U95740,	AC026401, U95740
S/G/Y/R/B/O	NT_024776	-	WI-6467			16	89.70	1	U91321,	U91321
S/G/Y/R/B/O	NT_024776	-	CHLC.GAAT1E9			16	90.00	1	AC027130,	AC027130
S/G/Y/R/B/O	NT_024776	-	WI-2753			16	92.80	1	AC004131, AC027130,	AC004131, AC027130
S/G/Y/R/B/O	NT_024776	-	RH54747	16	176.15	16	95.00	2	AC010488, AC020757, U91318,	AC010488, AC020757, U91318
S/G/Y/R/B/O	NT_024776	-	RH54765	16	185.37	16	95.10	1	AC003108, AC012621,	AC003108, AC012621
S/G/Y/R/B/O	NT_024776	-	RH54772	16	116.88			1	AC007216,	AC007216, AC009048, U95742
S/G/Y/R/B/O	NT_024776	-	RH54780	16	170.28	16	95.10	1	AC026401, AF001548,	AC026401, AF001548
S/G/Y/R/B/O	NT_024776	-	RH54792	16	161.41	16	95.30	1	AC020621, AC023816, AF001552,	AC002043, AC002043, AC020621, AC023816, AF001552
S/G/Y/R/B/O	NT_024776	-	RH54808	16	161.61	16	95.40	1	AC007598,	AC007598, AC007612, AC007612, AC009172
S/G/Y/R/B/O	NT_024776	-	RH54834	16	169.00	16	96.20	0
S/G/Y/R/B/O	NT_024776	-	RH54847	16	165.02	16	96.30	1	AC099518,	AC099518
S/G/Y/R/B/O	NT_024776	-	RH64828	16	170.71			1	AC002039, AC010488,	AC002039, AC010488, L20967
S/G/Y/R/B/O	NT_024776	-	WI-4563			16	96.30	1	AC003003,	AC003003
S/G/Y/R/B/O	NT_024776	-	RH65513	16	183.53			1	AC003108, U91321,	AC003108, U91321
S/G/Y/R/B/O	NT_024776	-	RH65989	16	167.28			1	AC009167,	AC009167
S/G/Y/R/B/O	NT_024776	-	RH66032	16	182.91			2	AC020716, AC026472,	AC020716, AC025289, AC026472
S/G/Y/R/B/O	NT_024776	-	RH66309	16	168.57			1	AC010333,	AC010333
S/G/Y/R/B/O	NT_024776	-	RH67018	16	185.47			1	AC099518,	AC099518
S/G/Y/R/B/O	NT_024776	-	RH67152	16	167.94			4	AC002039, AC002039, AC020757, AC023816, AC040158,	AC002039, AC002039, AC005136, AC020757, AC023816, AC040158
S/G/Y/R/B/O	NT_024776	-	RH67227	16	115.22			1	AC007216,	AC007216, AC009048, U95742
S/G/Y/R/B/O	NT_024776	-	RH67776	16	113.61			1	AC007613,	AC007613
S/G/Y/R/B/O	NT_024776	-	RH68328	16	163.70			1	AC007226, AC007613,	AC007226, AC007613, AC010654

NT_024776 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_024776	-	RH68685	16	165.50	1	AC007226, AC007613,	AC007226, AC007613, AC010654
S/G/Y/R/B/O	NT_024776	-	RH68839	16	173.72	1	AC026401, U95740,	AC026401, U95740
S/G/Y/R/B/O	NT_024776	-	RH68916	16	182.91	2	AC020716, AC026472,	AC020716, AC025289, AC026472
S/G/Y/R/B/O	NT_024776	-	RH68919	16	185.57	1	AC004131, AC027130,	AC004131, AC027130
S/G/Y/R/B/O	NT_024776	-	RH69294	16	164.45	1		AC010654
S/G/Y/R/B/O	NT_024776	-	RH69330	16	185.57	1	AC027130,	AC027130
S/G/Y/R/B/O	NT_024776	-	RH69435	16	185.37	1	AC002550,	AC002550
S/G/Y/R/B/O	NT_024776	-	RH69796	16	164.45	1	AC092365,	AC092365
S/G/Y/R/B/O	NT_024776	-	RH69799	16	167.25	1	AC092291,	AC092291
S/G/Y/R/B/O	NT_024776	-	RH69889	16	177.45	1	AC026401, AF001548,	AC026401, AF001548
S/G/Y/R/B/O	NT_024776	-	RH70101	16	165.26	1	U91319,	U91319
S/G/Y/R/B/O	NT_024776	-	RH70306	16	164.37	1	AC007616, AC099489,	AC007616, AC099489
S/G/Y/R/B/O	NT_024776	-	RH70738	16	170.08	4	AC002045, AC040158, AC092137,	AC002045, AC005136, AC040158, AC092137
S/G/Y/R/B/O	NT_024776	-	RH70841	16	172.28	1	AC002039, AC010488,	AC002039, AC010488
S/G/Y/R/B/O	NT_024776	-	RH70947	16	176.35	1	AC025778, U91318,	AC025778, U91318
S/G/Y/R/B/O	NT_024776	-	RH70979	16	164.37	1	AC007216,	AB052772, AC007216, U95742, Z29574
S/G/Y/R/B/O	NT_024776	-	RH71423	16	168.23	1	AC040158,	AC040158
S/G/Y/R/B/O	NT_024776	-	RH74422	16	181.49	0
S/G/Y/R/B/O	NT_024776	-	RH74878	16	163.47	1	AC025778, U91318,	AC025778, U91318
S/G/Y/R/B/O	NT_024776	-	RH75132	16	164.81	1	AC026401, U95740,	AC026401, U95740
S/G/Y/R/B/O	NT_024776	-	RH75393	16	183.53	1	AC002550,	AC002550
S/G/Y/R/B/O	NT_024776	-	RH78263	16	183.53	1	AC004131, AC027130,	AC004131, AC027130
S/G/Y/R/B/O	NT_024776	-	RH78567	16	114.02	0
S/G/Y/R/B/O	NT_024776	-	RH79236	16	185.47	1	AC003108, U91321,	AC003108, U91321
S/G/Y/R/B/O	NT_024776	-	RH91300	16	169.00	1	AC003026, AC025778, AC026452,	AC003026, AC025778, AC026452
S/G/Y/R/B/O	NT_024776	-	RH80502	16	163.34	4	AC010093, AC020757, AL358794, U91318,	AC010093, AC020757, AC097471, AL358794, U91318
S/G/Y/R/B/O	NT_024776	-	RH91351	16	113.28	0	AC007220, AC009121, AC025285,	AC002047, AC002286, AC007220, AC009121, AC025285, Z46940
S/G/Y/R/B/O	NT_024776	-	RH91407	16	177.37	1	AC026401, AF001548,	AC026401, AF001548
S/G/Y/R/B/O	NT_024776	-	RH92544	16	185.37	1	AC010494, AC099518,	AC010494, AC099518
S/G/Y/R/B/O	NT_024776	-	RH92684	16	164.45	1	AC092365,	AC037438, AC092365
S/G/Y/R/B/O	NT_024776	-	RH92994	16	183.53	1	AC099518,	AC099518
S/G/Y/R/B/O	NT_024776	-	RH93186	16	185.47	1	U91321,	U91321
S/G/Y/R/B/O	NT_024776	-	RH93193	16	164.45	0
S/G/Y/R/B/O	NT_024776	-	RH93458	16	185.47	1	AC003108, U91321,	AC003108, U91321
S/G/Y/R/B/O	NT_024776	-	RH93571	16	185.47	1	AC003003,	AC003003
S/G/Y/R/B/O	NT_024776	-	RH93586	16	173.82	1	AC024120, U91323,	AC024120, U91323
S/G/Y/R/B/O	NT_024776	-	RH93725	16	115.67	0
S/G/Y/R/B/O	NT_024776	-	RH98395	16	183.53	1	AC010494, AC099518,	AC010494, AC099518
S/G/Y/R/B/O	NT_024776	-	RH9842	16	163.82	1	AC007216, AC007226,	AC007216, AC007226, AC009048, AC010654, U95742
S/G/Y/R/B/O	NT_024776	-	RH98769	16	164.02	0
S/G/Y/R/B/O	NT_024776	-	RH98909	16	179.79	1	AC026008, AC106769, AC109446,	AC021115, AC026008, AC106769, AC109446
S/G/Y/R/B/O	NT_024776	-	RH99011	16	174.13	3	AC002492, AC020716, AC026472,	AC002492, AC020716, AC025289, AC026472