Home    Genome Browser    BLAT Search    Help
  Chromosome 2 - RH Maps - Single Contig
 

Chromosome 2 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005 NT_022221 NT_022139 NT_022270 NT_022194 NT_022327 NT_005334 NT_033008
NT_033000 NT_005214 NT_033002 NT_022227 NT_015926 NT_005204 NT_030589 NT_005367
NT_015120 NT_026239 NT_005389 NT_005399 NT_005375 NT_032985 NT_032982 NT_032996
NT_033007 NT_033006 NT_032984 NT_032999 NT_022354 NT_033004 NT_022184 NT_005322
NT_022143 NT_015805 NT_033003 NT_032992 NT_029235 NT_032994 NT_022300 NT_026970
NT_032987 NT_022171 NT_032997 NT_005429 NT_005224 NT_029895 NT_022240 NT_031762
NT_032990 NT_019306 NT_026982 NT_030595 NT_022222 NT_029927 NT_005079 NT_022135
NT_032991 NT_022140 NT_029911 NT_028068 NT_030590 NT_005058 NT_029926 NT_005129
NT_022172 NT_005273 NT_005435 NT_005151 NT_031761 NT_022154 NT_005343 NT_005332
NT_025652 NT_032998 NT_005265 NT_005031 NT_022339 NT_030600 NT_022197 NT_005483
NT_005062 NT_022155 NT_032995 NT_005190 NT_030603 NT_005417 NT_028103 NT_033001
NT_005037 NT_005229 NT_005370 NT_005034 NT_005078 NT_005486 NT_031748 NT_005337
NT_005403 NT_032986 NT_022115 NT_005414 NT_022315 NT_005120 NT_022173 NT_022388
NT_005416 NT_005472 NT_022250 NT_032981 NT_026250


  NT_005151
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005151AC0793471548038633          
S/G/Y/R/B/O NT_005151AC0120661549280313AFM205ZH8    2787.001 AC012066
S/G/Y/R/B/O NT_005151AC0120661549590133RH267472508.25    1 AC012066
S/G/Y/R/B/O NT_005151AC0120661550056773WI-21985    2789.501 AC012066
S/G/Y/R/B/O NT_005151AC0120661550056773RH563842508.15    1 AC012066
S/G/Y/R/B/O NT_005151AC0120661550366843RH570942508.2527233.002789.101 AC012066
S/G/Y/R/B/O NT_005151AC0120661550366843RH701312508.15    1 AC012066
S/G/Y/R/B/O NT_005151AC0120661550792583RH464222508.25    1 AC012066
S/G/Y/R/B/O NT_005151AC0937941550887693          
S/G/Y/R/B/O NT_005151AC0124431551764803RH7915  27148.00  1 AC012443
S/G/Y/R/B/O NT_005151AC0124431552322233RH563722508.2527233.002789.101 AC012443
S/G/Y/R/B/O NT_005151AC0124431552363043RH571132508.25    1 AC012443
S/G/Y/R/B/O NT_005151AC0124431552363043WI-16286    2787.601 AC012443
S/G/Y/R/B/O NT_005151AC0124431552367363RH262992510.27    1 AC012443
S/G/Y/R/B/O NT_005151AC0124431552367543NIB74    2789.201 AC012443
S/G/Y/R/B/O NT_005151AC0124431552367543RH570312508.15    1 AC012443
S/G/Y/R/B/O NT_005151AC0124431552396933RH566452508.2527233.002789.101 AC012443
S/G/Y/R/B/O NT_005151AC0124431552403103RH178622508.25    1 AC012443
S/G/Y/R/B/O NT_005151AC0124431552403903RH567162508.55    1 AC012443
S/G/Y/R/B/O NT_005151AC0124431552403903TIGR-A004T42    2787.001 AC012443
S/G/Y/R/B/O NT_005151AC0124431552426683RH38070  27233.00  1 AC012443
S/G/Y/R/B/O NT_005151AC0124431552434323RH939112508.45    1 AC012443
S/G/Y/R/B/O NT_005151AC0124431552453623RH655612508.25    1 AC012443
S/G/Y/R/B/O NT_005151AC0124431552458543WI-16116    2789.201 AC012443
S/G/Y/R/B/O NT_005151AC0124431552458543RH565362508.05    1 AC012443
S/G/Y/R/B/O NT_005151AC0124431552468863RH682192508.25    1 AC012443
S/G/Y/R/B/O NT_005151AC0793441552852893RH921582503.86    1 AC079344
S/G/Y/R/B/O NT_005151AC0793441553185433RH565642508.2527233.002789.101 AC079344
S/G/Y/R/B/O NT_005151AC0793441553252713RH676392508.25    1 AC079344
S/G/Y/R/B/O NT_005151AC0793441553513913RH562012508.45    1 AC079344
S/G/Y/R/B/O NT_005151AC0793441553513913WI-20737    2787.501 AC079344
S/G/Y/R/B/O NT_005151AC0793441553529003RH565852508.25  2789.101 AC079344
S/G/Y/R/B/O NT_005151AC0099691554824443WI-4168    2801.601 AC009969
S/G/Y/R/B/O NT_005151AC0730671555261553          
S/G/Y/R/B/O NT_005151AC1046241555452333          
S/G/Y/R/B/O NT_005151AC0966481555557953          
S/G/Y/R/B/O NT_005151AC0119011556982793WI-3261    2800.501 AC011901
S/G/Y/R/B/O NT_005151AC0133951557778231          
S/G/Y/R/B/O NT_005151AC0791501557779933          
S/G/Y/R/B/O NT_005151AC0125011560681963RH565422511.90  2791.901AP000883, AC012501, AP000883, AP001971
S/G/Y/R/B/O NT_005151AC0125011560682583RH663282512.11    1AP000883, AC012501, AP000883, AP001971
S/G/Y/R/B/O NT_005151AC0125011561064093RH476522511.90    1AP000883, AC012501, AP000883, AP001971
S/G/Y/R/B/O NT_005151AC1108071561656133          
S/G/Y/R/B/O NT_005151AC0685371562881023          
S/G/Y/R/B/O NT_005151AC0925841563219003          
S/G/Y/R/B/O NT_005151AC0739941564805381WI-634    2798.801AC016287, AC016287, AC073994
S/G/Y/R/B/O NT_005151AC0162871565493991RH286342510.69    1AC068437, AC016287, AC068437
S/G/Y/R/B/O NT_005151AC0684371565567681          
S/G/Y/R/B/O NT_005151AC0790781565954621          
S/G/Y/R/B/O NT_005151AC0925891566250133          


  NT_005151 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005151AC0081661567056013RH654942510.76    1AC079078, AC008166, AC079078
S/G/Y/R/B/O NT_005151AC0081661567746923RH421212511.90    1 AC008166
S/G/Y/R/B/O NT_005151AC0081661567746923RH134672511.9027283.00  1 AC008166
S/G/Y/R/B/O NT_005151AC0092971568791733RH481672511.90    1 AC009297
S/G/Y/R/B/O NT_005151AC0092971569074073RH570062510.69  2791.001 AC009297, AC073929
S/G/Y/R/B/O NT_005151AC0092271570724893RH183432511.90    1 AC009227, AC073226, AC073845
S/G/Y/R/B/O NT_005151AC0092271570756223RH926602511.90    1 AC009227, AC073226, AC073845
S/G/Y/R/B/O NT_005151AC0107301571772743RH569112512.84  2791.901 AC010730, AC073845
S/G/Y/R/B/O NT_005151AC0107301572000673RH359332511.90    1 AC010730, AC073845
S/G/Y/R/B/O NT_005151AC0107301572001383RH265362511.59    1 AC010730, AC073845
S/G/Y/R/B/O NT_005151AC0619611573093753RH566022510.89  2800.201 AC061961, AC091844
S/G/Y/R/B/O NT_005151AC0619611573093933RH473472511.90    1 AC061961, AC091844
S/G/Y/R/B/O NT_005151AC1070601573541943          
S/G/Y/R/B/O NT_005151AC0936331574752203RH706222511.90    1 AC016537, AC026742, AC093633
S/G/Y/R/B/O NT_005151AC0936331574753053RH562362511.90  2793.101 AC016537, AC026742, AC093633
S/G/Y/R/B/O NT_005151AC0936331574772153RH562642512.6427270.002793.101 AC016537, AC026742, AC093633
S/G/Y/R/B/O NT_005151AC0936331574793013RH123642511.90    1 AC016537, AC026742, AC093633
S/G/Y/R/B/O NT_005151AC0931121575554563RH986122513.37    1 AC093112
S/G/Y/R/B/O NT_005151AC0926251575847873          
S/G/Y/R/B/O NT_005151AC0792561576897083WI-4058    2798.801 AC079256
S/G/Y/R/B/O NT_005151AC0792561577078183CHLC.GATA63F01    2793.101 AC079256
S/G/Y/R/B/O NT_005151AC0965781577971603          
S/G/Y/R/B/O NT_005151AC0926621578038803          
S/G/Y/R/B/O NT_005151AC1048181580465403RH151702517.35  2794.801 AC023652, AC104818
S/G/Y/R/B/O NT_005151AC0967641580505763          
S/G/Y/R/B/O NT_005151AC0732251581100623          
S/G/Y/R/B/O NT_005151AC0679581582806963RH934382515.32    1 AC067958
S/G/Y/R/B/O NT_005151AC0681361583347323          
S/G/Y/R/B/O NT_005151AC0687021584016621          
S/G/Y/R/B/O NT_005151AC0739021586293973RH678902517.45    1 AC073902
S/G/Y/R/B/O NT_005151AC0933751586354133          
S/G/Y/R/B/O NT_005151AC0735511586430533          
S/G/Y/R/B/O NT_005151AC0685521587309033RH651922519.57    1 AC068552
S/G/Y/R/B/O NT_005151AC0740991589374553RH1020642519.57    1 AC011185, AC074099
S/G/Y/R/B/O NT_005151AC0740991589585013RH683532519.57    1 AC073847, AC074099
S/G/Y/R/B/O NT_005151AC0740991589614743RH450512513.37    1 AC073847, AC074099
S/G/Y/R/B/O NT_005151AC0926861590554683RH981672520.19    1 AC067756, AC068221, AC092686, U58767
S/G/Y/R/B/O NT_005151AC0926861590565003RH987752519.57    1 AC067756, AC068221, AC092686, U58767
S/G/Y/R/B/O NT_005151AC0113081591263763RH984782519.57    1 AC011308, AC068221
S/G/Y/R/B/O NT_005151AC0113081591447593RH452952519.57    1 AC011308, AC067756, AC068221
S/G/Y/R/B/O NT_005151AC0113081592015963RH470732513.05    1 AC011308, AC068221
S/G/Y/R/B/O NT_005151AC0113081592028233RH179982519.57    1 AC011308, AC068221
S/G/Y/R/B/O NT_005151AC0113081592061553RH477342513.05    1 AC011308, AC068221
S/G/Y/R/B/O NT_005151AC0113081592110063RH1031222519.57    1 AC011308
S/G/Y/R/B/O NT_005151AC0218491592320753          
S/G/Y/R/B/O NT_005151AC0965891594005853          
S/G/Y/R/B/O NT_005151AC1080571595557283          
S/G/Y/R/B/O NT_005151AC0926241596809703          
S/G/Y/R/B/O NT_005151AC0167321598306783RH709205339.90    2AC093223, AC109996, AC093223, AC109996
S/G/Y/R/B/O NT_005151AC0167321598818603RH562152514.6227395.002794.601 AC016732


  NT_005151 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005151AC0167321598819043RH38197  27384.00  1 AC016732
S/G/Y/R/B/O NT_005151AC0167321598819233RH474402513.26    1 AC016732
S/G/Y/R/B/O NT_005151AC0167321599222963RH942722519.57    1 AC016732, AC021322, AC061990
S/G/Y/R/B/O NT_005151AC0167321599250523RH688792519.57    1 AC016732, AC021322, AC061990
S/G/Y/R/B/O NT_005151AC0167321599318333RH1035132515.03    1 AC016732, AC021322, AC061990
S/G/Y/R/B/O NT_005151AC0167321599388433RH943282513.32    1 AC016732, AC021322, AC061990
S/G/Y/R/B/O NT_005151AC0192011600352363RH689902519.57    1 AC019201, AC021322, AC061990
S/G/Y/R/B/O NT_005151AC0192011600352683RH2030  27383.00  1 AC019201, AC021322
S/G/Y/R/B/O NT_005151AC0797501601208803          
S/G/Y/R/B/O NT_005151AC0191861603093303RH565082520.87  2801.501 AC019186, AP001335
S/G/Y/R/B/O NT_005151AC0191861603457203RH38562  27379.00  1 AC019186, AP001335
S/G/Y/R/B/O NT_005151AC0191861603564413RH562822540.78  2803.401 AC019186, AP001335
S/G/Y/R/B/O NT_005151AC0191861603564413RH689032521.12    1 AC019186, AP001335
S/G/Y/R/B/O NT_005151AC0191861603573263RH709742523.33    1 AC019186, AP001335
S/G/Y/R/B/O NT_005151AC0137311604151843RH134892523.3327386.00  1 AC013731
S/G/Y/R/B/O NT_005151AC0137311604275743RH566362540.78  2803.401 AC013731
S/G/Y/R/B/O NT_005151AC0137311604849503RH695822521.12    1 AC013731
S/G/Y/R/B/O NT_005151AC0914881605369213          
S/G/Y/R/B/O NT_005151AC0055391606343363RH568912520.91  2801.501 AC005539
S/G/Y/R/B/O NT_005151AC0055391606574363RH570822512.94  2801.601 AC005539
S/G/Y/R/B/O NT_005151AC0055391607348313RH565912521.18  2794.701 AC005539
S/G/Y/R/B/O NT_005151AC0055391607407253RH565342521.1827379.002794.701 AC005539
S/G/Y/R/B/O NT_005151AC0691461607661143          
S/G/Y/R/B/O NT_005151AC0190441608868843          
S/G/Y/R/B/O NT_005151AC0080701610113813          
S/G/Y/R/B/O NT_005151AC0050421612317823RH167212521.12    1 AC005042
S/G/Y/R/B/O NT_005151AC0050421612318593RH74577  27383.00  1 AC005042
S/G/Y/R/B/O NT_005151AC0050421612547223RH921832520.87    1 AC005042
S/G/Y/R/B/O NT_005151AC0050421612827343RH675452521.12    1 AC005042
S/G/Y/R/B/O NT_005151AC0050421612828193RH452412521.18    1 AC005042
S/G/Y/R/B/O NT_005151AC0050421612975963RH561072540.35  2803.401 AC005042
S/G/Y/R/B/O NT_005151AC0050421612977463RH100392521.12    1  
S/G/Y/R/B/O NT_005151AC0050421613011423RH562962520.91  2795.301 AC005042
S/G/Y/R/B/O NT_005151AC0050421613027693RH1035382540.45    1 AC005042
S/G/Y/R/B/O NT_005151AC0050421613223953CHLC.ATA27H09    2805.501 AC005042
S/G/Y/R/B/O NT_005151AC0798771613562633          
S/G/Y/R/B/O NT_005151AC0648431614395603          
S/G/Y/R/B/O NT_005151AC1053461615044583          
S/G/Y/R/B/O NT_005151AC0100931616780823WI-3039    2811.901 AC010093, AC097471
S/G/Y/R/B/O NT_005151AC0100931617021313RH8050216163.34    4AC020757, AL358794, U91318, AC010093, AC020757, AC097471, AL358794, U91318
S/G/Y/R/B/O NT_005151AC0093071618522183RH990802541.65    1 AC006501, AC009307
S/G/Y/R/B/O NT_005151AC0093071618819233RH688282527.52    1 AC006501, AC009307
S/G/Y/R/B/O NT_005151AC0093071618851443RH31651  27404.00  1 AC006501, AC009307
S/G/Y/R/B/O NT_005151AC0082771619379833RH37805  27404.00  1 AC006501, AC008277
S/G/Y/R/B/O NT_005151AC0082771619389463RH568852537.12  2809.601 AC006501, AC008277
S/G/Y/R/B/O NT_005151AC0082771619389713RH1033522538.39    1 AC006501, AC008277
S/G/Y/R/B/O NT_005151AC0082771620497303RH685332538.39    1 AC008277
S/G/Y/R/B/O NT_005151AC0082771620544053WI-960    2809.601 AC008277
S/G/Y/R/B/O NT_005151AC0095061621568303RH984582527.52    1 AC009506
S/G/Y/R/B/O NT_005151AC0095061622345223RH927992540.30    1 AC009506


  NT_005151 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005151AC0095061622368133RH561092529.49  2813.101 AC009506
S/G/Y/R/B/O NT_005151AC0095061622369053RH369692539.76    1 AC009506
S/G/Y/R/B/O NT_005151AC0099611623554623RH694852529.49    1 AC009291, AC009961
S/G/Y/R/B/O NT_005151AC0099611623864533RH167692529.49    1 AC009291
S/G/Y/R/B/O NT_005151AC0099611623886083RH705022529.49    1 AC009291, AC009961
S/G/Y/R/B/O NT_005151AC0099611623888533RH264832527.62    1 AC009291, AC009961
S/G/Y/R/B/O NT_005151AC0099611623890493RH252602529.49    1 AC009291, AC009961
S/G/Y/R/B/O NT_005151AC0099611623906233RH565372538.39  2809.501 AC009291, AC009961
S/G/Y/R/B/O NT_005151AC0099611624098983RH697012529.39    1 AC009961
S/G/Y/R/B/O NT_005151AC0099611624122363D2S156    2811.901 AC009961
S/G/Y/R/B/O NT_005151AC0099611624122363RH133732532.5327423.00  1 AC009961
S/G/Y/R/B/O NT_005151AC0099611624233743RH1019182537.77    1 AC009961
S/G/Y/R/B/O NT_005151AC0875941624745951          
S/G/Y/R/B/O NT_005151AC0938731625540743RH124132529.49    1 AC093873
S/G/Y/R/B/O NT_005151AC0938731625626883RH564022529.2527413.002811.201 AC093873
S/G/Y/R/B/O NT_005151AC0938731625678993RH1039442529.49    1 AC093873
S/G/Y/R/B/O NT_005151AC0938731626349553RH452532540.95    1AC080166, AC080166, AC093873
S/G/Y/R/B/O NT_005151AC0801661627212673RH109932529.49    1 AC080166
S/G/Y/R/B/O NT_005151AC0801661627213783RH941442529.49    1  
S/G/Y/R/B/O NT_005151AC0921531628793353RH941652529.39    1 AC020993, AC092153
S/G/Y/R/B/O NT_005151AC0921531628950193RH934372529.39    1 AC020993, AC092153
S/G/Y/R/B/O NT_005151AC0921531628961613RH808642541.65    2AC078889, AC012264, AC020993, AC078889, AC092153, D82351
S/G/Y/R/B/O NT_005151AC0921531628961613RH808722528.87    2AC078889, AC012264, AC020993, AC078889, AC092153, D82351
S/G/Y/R/B/O NT_005151AC0921531628970793RH1043292537.77    1 AC020993, AC092153
S/G/Y/R/B/O NT_005151AC0921531629016003RH689392529.39    1 AC020993, AC092153
S/G/Y/R/B/O NT_005151AC1045981629286253RH571402540.19  2809.601 AC104598
S/G/Y/R/B/O NT_005151AC1045981629396593RH364752527.62    1 AC104598
S/G/Y/R/B/O NT_005151AP0008831630488301          
S/G/Y/R/B/O NT_005151 - RH119362508.35    0AC009497, AC009497, AC093739
S/G/Y/R/B/O NT_005151 - CHLC.GATA22H09    2809.601AC096656, AC096656
S/G/Y/R/B/O NT_005151 - RH565192529.08    0  
S/G/Y/R/B/O NT_005151 - RH653612537.45    0  
S/G/Y/R/B/O NT_005151 - RH656052529.39    1AC064863, AC073190, AC064863, AC073190
S/G/Y/R/B/O NT_005151 - RH707262527.52    0  
S/G/Y/R/B/O NT_005151 - RH804782541.00    0  
S/G/Y/R/B/O NT_005151 - RH914762538.39    0