Chromosome 2 - RH Maps - Single Contig

Chromosome 2 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_015805

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_015805	AC078974	88566737	3	RH103646	2	302.50					1		AC013822, AC078974
S/G/Y/R/B/O	NT_015805	AC078974	88567833	3	RH11910	2	301.92					1		AC013822, AC078974
S/G/Y/R/B/O	NT_015805	AC078974	88568283	3	RH93342	2	301.92					1		AC013822, AC078974
S/G/Y/R/B/O	NT_015805	AC078974	88572620	3	RH30749			2	3501.00			1		AC013822
S/G/Y/R/B/O	NT_015805	AC011236	88679857	3	RH103338	2	295.38					1		AC011236, AC013822
S/G/Y/R/B/O	NT_015805	AC011236	88700452	3	RH45510	2	295.38					1		AC011236, AC013822
S/G/Y/R/B/O	NT_015805	AC011236	88773753	3	RH31626			2	3518.00			1	AC093162,	AC011236, AC093162
S/G/Y/R/B/O	NT_015805	AC093162	88822039	3	RH45456	2	295.34					1		AC093162
S/G/Y/R/B/O	NT_015805	AC093162	88822870	3	RH66992	2	295.28					1		AC093162
S/G/Y/R/B/O	NT_015805	AC093162	88830885	3	RH10607	2	295.28					1		AC093162
S/G/Y/R/B/O	NT_015805	AC093162	88831389	3	RH98820	2	295.28					1		AC093162
S/G/Y/R/B/O	NT_015805	AC093162	88832757	3	RH12119	2	295.34					1		AC093162
S/G/Y/R/B/O	NT_015805	AC093162	88835382	3	RH32473			2	3474.00			1		AC093162, AF029316
S/G/Y/R/B/O	NT_015805	AC093162	88854855	3	RH4802	2	322.64					1		AC093162
S/G/Y/R/B/O	NT_015805	AC062037	88903280	3	RH26121	2	322.88					1		AC062037
S/G/Y/R/B/O	NT_015805	AC062037	88904238	3	RH56516	2	302.02			2	379.80	1		AC062037
S/G/Y/R/B/O	NT_015805	AC062037	88904268	3	RH10844	2	295.28					1		AC062037
S/G/Y/R/B/O	NT_015805	AC062037	88904277	3	RH41773	2	302.02					1		AC062037
S/G/Y/R/B/O	NT_015805	AC062037	88904327	3	RH66971	2	295.38					1		AC062037
S/G/Y/R/B/O	NT_015805	AC062037	88907547	3	RH56531	2	295.38			2	377.10	1		AC062037
S/G/Y/R/B/O	NT_015805	AC016753	89062037	3	RH47212	2	295.38					2	AC096715,	AC016753, AC096715, U65896
S/G/Y/R/B/O	NT_015805	AC016753	89062508	3	RH57095	2	295.38			2	377.30	2	AC096715,	AC016753, AC096715, U65896
S/G/Y/R/B/O	NT_015805	AC016753	89094325	3	RH98261	2	292.55					2	AC096715,	AC016753, AC096715
S/G/Y/R/B/O	NT_015805	AC016753	89105772	3	SGC32754					2	368.00	2	AC096715,	AC016753, AC096715
S/G/Y/R/B/O	NT_015805	AC016753	89105772	3	RH57072	2	318.66					2	AC096715,	AC016753, AC096715
S/G/Y/R/B/O	NT_015805	AC016753	89111122	3	RH92941	2	293.96					2	AC096715,	AC016753, AC096715
S/G/Y/R/B/O	NT_015805	AC016753	89111303	3	RH8020			2	4328.00			2	AC096715,	AC016753, AC096715
S/G/Y/R/B/O	NT_015805	AC016753	89111333	3	RH66876	2	293.86					2	AC096715,	AC016753, AC096715
S/G/Y/R/B/O	NT_015805	AC016753	89118010	3	RH56337	2	294.16	2	4328.00	2	379.60	2	AC096715,	AC016753, AC096715
S/G/Y/R/B/O	NT_015805	AC012454	89121232	3	RH56578	2	293.96			2	371.90	2	AC016753, AC096715,	AC012454, AC016753, AC096715
S/G/Y/R/B/O	NT_015805	AC012454	89161587	3	RH56780	2	293.96			2	371.10	2	AC096715,	AC012454, AC096715
S/G/Y/R/B/O	NT_015805	AC012454	89171024	3	RH1791			2	4337.00			2	AC096715,	AC012454, AC096715, AF400074
S/G/Y/R/B/O	NT_015805	AC012454	89171607	3	RH69695	2	293.86					2	AC096715,	AC012454, AC096715, AF400074, M24461
S/G/Y/R/B/O	NT_015805	AC012454	89171916	3	RH98252	2	302.66					2	AC096715,	AC012454, AC096715, AF400074, M24461
S/G/Y/R/B/O	NT_015805	AC012454	89276479	3	RH15554	2	295.79	2	4320.00			1		AC012454
S/G/Y/R/B/O	NT_015805	AC012454	89287756	3	RH103908	2	301.98					1		AC012454
S/G/Y/R/B/O	NT_015805	AC105053	89362472	3	RH13689	2	297.93	2	4324.00			1		AC105053
S/G/Y/R/B/O	NT_015805	AC105053	89363204	3	RH48544	2	301.50					1
S/G/Y/R/B/O	NT_015805	AC105053	89382145	3	RH70638	2	297.93					1		AC105053
S/G/Y/R/B/O	NT_015805	AC105053	89407380	3	RH26986	1	113.98					3	AL358433, AL591845,	AC087619, AC105053, AL358433, AL591845
S/G/Y/R/B/O	NT_015805	AC012511	89533711	3	RH91130	2	303.08					1		AC012511
S/G/Y/R/B/O	NT_015805	AC012511	89537027	3	RH68117	2	302.45					1		AC012511
S/G/Y/R/B/O	NT_015805	AC012511	89539137	3	RH94225	2	300.25					1		AC012511
S/G/Y/R/B/O	NT_015805	AC009309	89645430	3	RH57100	2	302.40			2	386.60	1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89650832	3	RH12062	2	300.25					1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89650972	3	RH33830			2	4309.00			1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89652777	3	RH56974	2	302.87			2	381.80	1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89652777	3	RH10508	2	300.25					1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89652823	3	RH45713	2	300.25					1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89653432	3	RH48137	2	322.64					1		AC009309

NT_015805 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_015805	AC009309	89654205	3	RH36411	2	317.22					1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89656695	3	RH8585			2	4342.00			1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89656831	3	RH17386	2	300.25					1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89672709	3	RH57079	2	301.61			2	388.00	1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89724405	3	RH16635	2	300.14					1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89725260	3	RH56367	2	299.86			2	381.90	1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89725609	3	RH37891			2	4309.00			1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89726755	3	RH56071	2	301.50			2	384.80	1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89726845	3	RH10870	2	299.76					1		AC009309
S/G/Y/R/B/O	NT_015805	AC009309	89727917	3	RH10505	2	299.76					1		AC009309
S/G/Y/R/B/O	NT_015805	AC009408	89742382	3	RH56990	2	299.74			2	382.10	1		AC009408
S/G/Y/R/B/O	NT_015805	AC009408	89826065	3	RH1299			2	4298.00			1		AC009408
S/G/Y/R/B/O	NT_015805	AC009408	89826183	3	RH28451	2	321.73					1		AC009408
S/G/Y/R/B/O	NT_015805	AC068288	89965003	3	RH92486	2	317.03					1		AC068288
S/G/Y/R/B/O	NT_015805	AC068288	89967235	3	RH77990	X	298.19					2	AC002477,	AC002477, AL589985
S/G/Y/R/B/O	NT_015805	AC068288	89994303	3	RH69600	2	304.55					1		AC012419, AC068288
S/G/Y/R/B/O	NT_015805	AC068288	90015020	3	RH98777	2	317.03					1		AC012419, AC068288
S/G/Y/R/B/O	NT_015805	AC068288	90017283	3	RH69455	2	304.55					1		AC012419, AC068288
S/G/Y/R/B/O	NT_015805	AC068288	90018248	3	SGC31339					2	390.00	1		AC012419, AC068288
S/G/Y/R/B/O	NT_015805	AC068288	90018248	3	RH57001	2	315.69					1		AC012419, AC068288
S/G/Y/R/B/O	NT_015805	AC015971	90116424	3	RH98920	2	304.55					1		AB052743, AC012419, AC015971
S/G/Y/R/B/O	NT_015805	AC064848	90280411	3	RH68717	2	304.55					2	AC112696,	AC064848, AC112696
S/G/Y/R/B/O	NT_015805	AC064848	90286281	3	RH69547	2	304.55					2	AC112696,	AC064848, AC112696
S/G/Y/R/B/O	NT_015805	AC064848	90286548	3	RH33132			2	4260.00			2	AC112696,	AC064848, AC112696
S/G/Y/R/B/O	NT_015805	AC064848	90286667	3	RH26430	2	317.57					2	AC112696,	AC064848, AC112696
S/G/Y/R/B/O	NT_015805	AC064848	90286749	3	RH16449	2	304.34					2	AC112696,	AC064848, AC112696
S/G/Y/R/B/O	NT_015805	AC064848	90287705	3	RH56393	2	304.55	2	4355.00	2	389.70	2	AC112696,	AC064848, AC112696
S/G/Y/R/B/O	NT_015805	AC064848	90287770	3	RH16265	2	304.55					2	AC112696,	AC064848, AC112696
S/G/Y/R/B/O	NT_015805	AC064848	90288159	3	RH66712	2	304.55					2	AC112696,	AC064848, AC112696
S/G/Y/R/B/O	NT_015805	AC064848	90289593	3	RH44346	2	304.55					2	AC112696,	AC064848, AC112696
S/G/Y/R/B/O	NT_015805	AC064848	90290169	3	RH41923	2	304.55					2		AC064848
S/G/Y/R/B/O	NT_015805	AC064848	90290495	3	RH25089	2	316.68					3	AC112696,	AC006571, AC064848, AC112696
S/G/Y/R/B/O	NT_015805		-		RH103598	2	302.82					0	AC012454,	AC012454
S/G/Y/R/B/O	NT_015805		-		RH14126			2	4274.00			1	AC112696,	AC112696
S/G/Y/R/B/O	NT_015805		-		CHLC.GATA62B10					2	377.70	0	AC010087, AC022210,	AC010087, AC022210
S/G/Y/R/B/O	NT_015805		-		RH36954	2	302.66					0
S/G/Y/R/B/O	NT_015805		-		RH1852			2	4233.00			1	AC112696,	AC112696
S/G/Y/R/B/O	NT_015805		-		RH33322			2	4179.00			2	AC013271, AC112246, AC115115,	AC013271, AC108938, AC109815, AC112246, AC114781, AC115115
S/G/Y/R/B/O	NT_015805		-		RH33515			2	4113.00			1	AC064810, AC093616,	AC064810, AC093616
S/G/Y/R/B/O	NT_015805		-		RH74556			2	4133.00			3	AC005041, AC108479, AC112696,	AC005041, AC108479, AC111200, AC112696
S/G/Y/R/B/O	NT_015805		-		RH8790			2	4018.00			0	AC016745, AL135795, AL353608, AL356244, AL449043, AL512605, AL591968,	AC016745, AC016767, AC021029, AL135795, AL353608, AL355819, AL356244, AL449043, AL512605, AL591968