Home    Genome Browser    BLAT Search    Help
  Chromosome 2 - RH Maps - Single Contig
 

Chromosome 2 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033005 NT_022221 NT_022139 NT_022270 NT_022194 NT_022327 NT_005334 NT_033008
NT_033000 NT_005214 NT_033002 NT_022227 NT_015926 NT_005204 NT_030589 NT_005367
NT_015120 NT_026239 NT_005389 NT_005399 NT_005375 NT_032985 NT_032982 NT_032996
NT_033007 NT_033006 NT_032984 NT_032999 NT_022354 NT_033004 NT_022184 NT_005322
NT_022143 NT_015805 NT_033003 NT_032992 NT_029235 NT_032994 NT_022300 NT_026970
NT_032987 NT_022171 NT_032997 NT_005429 NT_005224 NT_029895 NT_022240 NT_031762
NT_032990 NT_019306 NT_026982 NT_030595 NT_022222 NT_029927 NT_005079 NT_022135
NT_032991 NT_022140 NT_029911 NT_028068 NT_030590 NT_005058 NT_029926 NT_005129
NT_022172 NT_005273 NT_005435 NT_005151 NT_031761 NT_022154 NT_005343 NT_005332
NT_025652 NT_032998 NT_005265 NT_005031 NT_022339 NT_030600 NT_022197 NT_005483
NT_005062 NT_022155 NT_032995 NT_005190 NT_030603 NT_005417 NT_028103 NT_033001
NT_005037 NT_005229 NT_005370 NT_005034 NT_005078 NT_005486 NT_031748 NT_005337
NT_005403 NT_032986 NT_022115 NT_005414 NT_022315 NT_005120 NT_022173 NT_022388
NT_005416 NT_005472 NT_022250 NT_032981 NT_026250


  NT_019306
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_019306AC0620271133561231AFM286WH5    2617.801 AC062027
S/G/Y/R/B/O NT_019306AC0170021132990943RH128792320.23    1 AC017002
S/G/Y/R/B/O NT_019306AC0170021132992563RH443482320.23    1 AC017002
S/G/Y/R/B/O NT_019306AC0170021133214913RH991362320.23    1 AC017002
S/G/Y/R/B/O NT_019306AC0931661134555453RH934562320.23    1 AC069171, AC093166
S/G/Y/R/B/O NT_019306AC0931661134557313RH653522320.23    2AC083899, AC069171, AC083899, AC093166
S/G/Y/R/B/O NT_019306AC1046511136232103RH31631  25640.00  1 AC104651
S/G/Y/R/B/O NT_019306AC1046511136491803RH38231  25645.00  1 AC104651
S/G/Y/R/B/O NT_019306AC1046511136614523RH285792404.19    1 AC104651
S/G/Y/R/B/O NT_019306AC0936751137317781RH705462402.41    1 AC093675
S/G/Y/R/B/O NT_019306AC0936751137319321WI-6701    2634.001 AC093675
S/G/Y/R/B/O NT_019306AC0936751138160981RH1032402408.50    1 AC093675
S/G/Y/R/B/O NT_019306AC0936751138563451RH8879  25662.00  1AC092645, AC092645, AC093675
S/G/Y/R/B/O NT_019306AC1122461140211511RH177942320.23    3AC013819, AC108479, AC112696, AC115115, AC013819, AC108479, AC111200, AC112246, AC112696, AC114781, AC115115
S/G/Y/R/B/O NT_019306AC1122461140674831WI-15297    2623.405AC009963, AC012487, AC013271, AC097527, AC114755, AC115115, AC009963, AC012487, AC013271, AC097527, AC108938, AC109815, AC112246, AC114755, AC114781, AC115115
S/G/Y/R/B/O NT_019306AC1122461140674831RH566012389.30    5AC009963, AC012487, AC013271, AC097527, AC114755, AC115115, AC009963, AC012487, AC013271, AC097527, AC108938, AC109815, AC112246, AC114755, AC114781, AC115115
S/G/Y/R/B/O NT_019306AC1122461140707511RH33322  24179.00  2AC013271, AC115115, AC013271, AC108938, AC109815, AC112246, AC114781, AC115115
S/G/Y/R/B/O NT_019306AC1122461140798781RH703652391.78    4AC012487, AC013271, AC064810, AC093616, AC109354, AC012487, AC013271, AC064810, AC083903, AC093616, AC108938, AC109354, AC109815, AC111200, AC112246, AC114781
S/G/Y/R/B/O NT_019306AC1122461141000971RH1028572409.01    3AC013271, AC064810, AC093616, AC109354, AC013271, AC064810, AC093616, AC108938, AC109354, AC109815, AC111200, AC112246, AC114781
S/G/Y/R/B/O NT_019306AC1151151137949301RH694142401.79    1AC112246, AC112246, AC114781, AC115115
S/G/Y/R/B/O NT_019306AC0926451139343333RH30756  25628.00  1AC115115, AC092645, AC115115
S/G/Y/R/B/O NT_019306AC0926451139492803SGC34780    2638.801AC115115, AC092645, AC115115
S/G/Y/R/B/O NT_019306AC0926451139533323RH933962399.17    1AC115115, AC092645, AC115115
S/G/Y/R/B/O NT_019306AC0926451139781243D2S160    2617.601AC115115, AC092645, AC115115
S/G/Y/R/B/O NT_019306AC0926451139781243RH133882399.27    1AC115115, AC092645, AC115115
S/G/Y/R/B/O NT_019306AC1122351144706381RH1844  25621.00  1 AC112235, X03833
S/G/Y/R/B/O NT_019306AC1122351144739641RH74641  25671.00  1AC067802, AC067802, AC112235, X03833
S/G/Y/R/B/O NT_019306AC0678021141284141          
S/G/Y/R/B/O NT_019306AC0620141141309321          
S/G/Y/R/B/O NT_019306AC0124421141878753RH568592410.46  2640.101 AC012442
S/G/Y/R/B/O NT_019306AC0124421141879733RH74587  25668.00  1 AC012442
S/G/Y/R/B/O NT_019306AC0124421141879953RH171952406.43    1 AC012442
S/G/Y/R/B/O NT_019306AC0124421142266953RH166372409.91    1AC062014, AC012442, AC062014
S/G/Y/R/B/O NT_019306AC0124421142281013RH106202407.16    1AC062014, AC012442, AC062014
S/G/Y/R/B/O NT_019306AC0124421142281303RH115342405.91    1AC062014, AC012442, AC062014
S/G/Y/R/B/O NT_019306AC0124421142719473RH1033122408.84    1AC062014, AC012442, AC062014, AC080187
S/G/Y/R/B/O NT_019306AC0124421142988763RH655992411.76    1AC062014, AC012442, AC062014, AC080187
S/G/Y/R/B/O NT_019306AC0124421143107623RH568262411.76  2645.501AC062014, AC012442, AC062014
S/G/Y/R/B/O NT_019306AC0799221143480273RH696662410.80    1AC067802, AC112235, AC067802, AC079922, AC080187, AC112235
S/G/Y/R/B/O NT_019306AC0799221143481933RH463002411.42    1AC067802, AC112235, AC067802, AC079922, AC080187, AC112235
S/G/Y/R/B/O NT_019306AC0799221143589973RH13966  25667.00  1AC067802, AC096509, AC112235, AC067802, AC079922, AC080187, AC096509, AC112235
S/G/Y/R/B/O NT_019306AC0799221143595533RH571022407.7225671.002568.501AC067802, AC096509, AC112235, AC067802, AC079922, AC080187, AC096509, AC112235
S/G/Y/R/B/O NT_019306AC0799221144338553RH567662411.54  2645.201AC067802, AC112235, AC067802, AC079922, AC112235
S/G/Y/R/B/O NT_019306AC0799221144386403WI-4848    2599.101AC067802, AC112235, AC067802, AC079922, AC080187, AC112235
S/G/Y/R/B/O NT_019306AC0797531145258423RH114812411.81    1AC112235, AC079753, AC112235, M15840, X04500
S/G/Y/R/B/O NT_019306AC0797531145259203RH8748  25676.00  1AC112235, AC079753, AC112235, M15840, X04500
S/G/Y/R/B/O NT_019306AC0797531145286213RH483182411.14    1AC112235, AC079753, AC112235, M15840, X04500
S/G/Y/R/B/O NT_019306AC0842801146347643          
S/G/Y/R/B/O NT_019306AC0167241146756713CHLC.GAAT11C03    2595.601 AC016724
S/G/Y/R/B/O NT_019306AC0167241148136093RH709112412.71    1AC024704, AC016724, AC024704, AF057168, U65590


  NT_019306 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_019306AC0167241148282903RH174952411.03    1AC024704, AC016724, AC024704, U65590, X64532
S/G/Y/R/B/O NT_019306AC0167241148283503RH13901  25709.00  1AC024704, AC016724, AC024704, U65590, X64532
S/G/Y/R/B/O NT_019306AC0167241148291723RH570632411.14  2594.101AC024704, AC016724, AC024704, U65590, X64532
S/G/Y/R/B/O NT_019306AC0247041148440383          
S/G/Y/R/B/O NT_019306AC0166831148979963RH700182412.66    1 AC016683
S/G/Y/R/B/O NT_019306AC0166831148981153RH470272412.37    1 AC016683
S/G/Y/R/B/O NT_019306AC0166831148984463RH928482412.99    1 AC016683
S/G/Y/R/B/O NT_019306AC0166831149115993RH940242412.66    1 AC016683
S/G/Y/R/B/O NT_019306AC0166831149128373RH569252412.99  2590.701 AC016683
S/G/Y/R/B/O NT_019306AC0166831149128533RH457332411.88    1 AC016683
S/G/Y/R/B/O NT_019306AC0166831149128973RH807052414.84    1 AC016683
S/G/Y/R/B/O NT_019306AC0166831149339163RH489542426.76    1 AC016683
S/G/Y/R/B/O NT_019306AC0166831149360953RH982962412.66    1 AC016683
S/G/Y/R/B/O NT_019306AC0166831149931473RH30757  25700.00  1 AC016683
S/G/Y/R/B/O NT_019306AC0166831150373813RH468812412.55    2AC016745, AC016683, AC016745
S/G/Y/R/B/O NT_019306AC0167451150381563          
S/G/Y/R/B/O NT_019306AL0786211151898423          
S/G/Y/R/B/O NT_019306AC0170741154022763RH172322419.99    1 AC017074
S/G/Y/R/B/O NT_019306AC0170741154044393WI-21796    2655.301 AC017074
S/G/Y/R/B/O NT_019306AC0170741154796683RH48552422.21  2581.601 AC017074
S/G/Y/R/B/O NT_019306AC0170741154796683RH32781  25751.00  1 AC017074
S/G/Y/R/B/O NT_019306AC1046531155634981RH8604  25753.00  1AC110769, AC027120, AC069268, AC069399, AC104653, AC110769
S/G/Y/R/B/O NT_019306AC1046531155636161RH8795  25756.00  1AC110769, AC027120, AC069268, AC069399, AC104653, AC110769
S/G/Y/R/B/O NT_019306AC1046531155900071RH570472412.88  2651.401AC110769, AC027120, AC104653, AC110769
S/G/Y/R/B/O NT_019306AC1107691156534563RH562462416.12  2585.901 AC023877, AC026208, AC027120, AC069268, AC069399, AC110769
S/G/Y/R/B/O NT_019306AC1107691156534813RH8613  25754.00  1 AC023877, AC026208, AC027120, AC069268, AC069399, AC110769
S/G/Y/R/B/O NT_019306AC1107691156544593RH683782422.11    1 AC023877, AC026208, AC027120, AC110769
S/G/Y/R/B/O NT_019306AC1107691156545723RH265672416.97    1 AC023877, AC026208, AC027120, AC069268, AC069399, AC110769
S/G/Y/R/B/O NT_019306AC1107691156573003RH692892422.11    1 AC023877, AC026208, AC027120, AC110769
S/G/Y/R/B/O NT_019306AC1107691156735513RH985222425.66    1 AC023877, AC027120, AC110769
S/G/Y/R/B/O NT_019306AC0109821156922903          
S/G/Y/R/B/O NT_019306AC1050501159093973          
S/G/Y/R/B/O NT_019306AC0234861160115141          
S/G/Y/R/B/O NT_019306AC0461561160182441          
S/G/Y/R/B/O NT_019306AC0266841160259811          
S/G/Y/R/B/O NT_019306AC0161471160361671          
S/G/Y/R/B/O NT_019306AC0921071160373241          
S/G/Y/R/B/O NT_019306AC0186881160510483          
S/G/Y/R/B/O NT_019306AC0161511162213521          
S/G/Y/R/B/O NT_019306AC0685421163450473          
S/G/Y/R/B/O NT_019306AC0120711165046233          
S/G/Y/R/B/O NT_019306AC0108851167738073RH928422427.74    1 AC010885
S/G/Y/R/B/O NT_019306AC0108851168346013CHLC.GATA3D02    2651.501AC104074, AC104075, AC010885, AC104074, AC104075
S/G/Y/R/B/O NT_019306AC0108851168394883RH33763  25775.00  1AC104075, AC010885, AC104075
S/G/Y/R/B/O NT_019306AC1073871168770733          
S/G/Y/R/B/O NT_019306AC1040741169758241          
S/G/Y/R/B/O NT_019306AC1040751169903571          
S/G/Y/R/B/O NT_019306 - RH117092411.70    0  
S/G/Y/R/B/O NT_019306 - RH42793  25705.00  1AC010095, AC073415, AC010095, AC073415
S/G/Y/R/B/O NT_019306 - RH180712409.69    0AC067802, AC067802, X03833


  NT_019306 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_019306 - RH268902412.77    1AC017040, AC017040
S/G/Y/R/B/O NT_019306 - RH285322413.15    1AC016721, AC016721
S/G/Y/R/B/O NT_019306 - RH365322409.46    0  
S/G/Y/R/B/O NT_019306 - RH464272409.06    1AC108463, AC108463
S/G/Y/R/B/O NT_019306 - RH563062405.03  2603.301AC096670, AC096670
S/G/Y/R/B/O NT_019306 - AFMA037YB9    2609.901AC114776, AC110613, AC114776
S/G/Y/R/B/O NT_019306 - IB846    2613.200  
S/G/Y/R/B/O NT_019306 - SGC34236    2614.201AC011753, AC011753
S/G/Y/R/B/O NT_019306 - WI-19400    2616.601AC012487, AC012487, AC083903
S/G/Y/R/B/O NT_019306 - RH568162408.79  2617.201AC108463, AC108463
S/G/Y/R/B/O NT_019306 - WI-21119    2617.701AC011919, AC013268, AC011919, AC013268, AC108938
S/G/Y/R/B/O NT_019306 - WI-16746    2618.801AC019100, AC019100, AF186262
S/G/Y/R/B/O NT_019306 - WI-14384    2619.302AC022170, AC073415, AC022170, AC073415
S/G/Y/R/B/O NT_019306 - SGC44330    2622.802AC022170, AC073415, AC022170, AC073415, AF130996
S/G/Y/R/B/O NT_019306 - WI-13158    2623.200  
S/G/Y/R/B/O NT_019306 - AFM151XD12    2625.801AC114776, AC110613, AC114776
S/G/Y/R/B/O NT_019306 - RH570362409.57  2630.001AC013271, AC062014, AC112246, AC013271, AC062014, AC108938, AC112246, AC114781
S/G/Y/R/B/O NT_019306 - RH673392406.32    1AC013271, AC062014, AC112246, AC013271, AC062014, AC108938, AC112246, AC114781
S/G/Y/R/B/O NT_019306 - AFM120XC11    2642.600  
S/G/Y/R/B/O NT_019306 - RH697002408.90    0AC012442, AC062014, AC012442, AC062014, AC080187