Chromosome 2 - RH Maps - Single Contig

Chromosome 2 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033005	NT_022221	NT_022139	NT_022270	NT_022194	NT_022327	NT_005334	NT_033008
NT_033000	NT_005214	NT_033002	NT_022227	NT_015926	NT_005204	NT_030589	NT_005367
NT_015120	NT_026239	NT_005389	NT_005399	NT_005375	NT_032985	NT_032982	NT_032996
NT_033007	NT_033006	NT_032984	NT_032999	NT_022354	NT_033004	NT_022184	NT_005322
NT_022143	NT_015805	NT_033003	NT_032992	NT_029235	NT_032994	NT_022300	NT_026970
NT_032987	NT_022171	NT_032997	NT_005429	NT_005224	NT_029895	NT_022240	NT_031762
NT_032990	NT_019306	NT_026982	NT_030595	NT_022222	NT_029927	NT_005079	NT_022135
NT_032991	NT_022140	NT_029911	NT_028068	NT_030590	NT_005058	NT_029926	NT_005129
NT_022172	NT_005273	NT_005435	NT_005151	NT_031761	NT_022154	NT_005343	NT_005332
NT_025652	NT_032998	NT_005265	NT_005031	NT_022339	NT_030600	NT_022197	NT_005483
NT_005062	NT_022155	NT_032995	NT_005190	NT_030603	NT_005417	NT_028103	NT_033001
NT_005037	NT_005229	NT_005370	NT_005034	NT_005078	NT_005486	NT_031748	NT_005337
NT_005403	NT_032986	NT_022115	NT_005414	NT_022315	NT_005120	NT_022173	NT_022388
NT_005416	NT_005472	NT_022250	NT_032981	NT_026250

NT_005034

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005034	AC093698	212089185	1	RH71346	2	644.49					2	AC013409, AC018961,	AC013409, AC018961, AC093698
S/G/Y/R/B/O	NT_005034	AC093698	215710834	1	RH71373	2	644.59					2	AC016697, AC018961,	AC016697, AC018961, AC093698
S/G/Y/R/B/O	NT_005034	AC018961	211264819	1	CHLC.GATA6A01					2	973.80	1	AC093698,	AC018961, AC093698
S/G/Y/R/B/O	NT_005034	AC018961	212106484	1	RH71454	2	640.43					2	AC093698, M19364,	AC018961, AC093698, M19364
S/G/Y/R/B/O	NT_005034	AC018961	212109139	1	RH69065	2	645.51					2	AC093698, M19364,	AC018961, AC093698, M19364
S/G/Y/R/B/O	NT_005034	AC009226	211410090	3	RH30013			2	9072.00			1		AC009226
S/G/Y/R/B/O	NT_005034	AC009298	211431184	3
S/G/Y/R/B/O	NT_005034	AC079767	211601886	1	RH67919	2	641.85					1	AC009409,	AC009409, S72459
S/G/Y/R/B/O	NT_005034	AC079767	211608411	1	SGC35219					2	970.00	1		AC079767
S/G/Y/R/B/O	NT_005034	AC079767	211608411	1	RH56788	2	643.47					1		AC079767
S/G/Y/R/B/O	NT_005034	AC009409	211614388	1
S/G/Y/R/B/O	NT_005034	AC096772	211758230	3	RH18275	2	646.66					2	AC092364,	AC092364, AC096772
S/G/Y/R/B/O	NT_005034	AC096772	211759664	3	RH45631	2	644.07					1		AC096772
S/G/Y/R/B/O	NT_005034	AC096772	211760170	3	RH66675	2	645.51					1		AC096772
S/G/Y/R/B/O	NT_005034	AC096772	211760183	3	RH66844	2	646.03					1		AC096772
S/G/Y/R/B/O	NT_005034	AC083900	211864385	3	RH30780			2	9089.00			1	AC022576,	AC022576, AC083900
S/G/Y/R/B/O	NT_005034	AC083900	211940882	3	RH42260	2	645.72					1	AC022576,	AC022576, AC083900
S/G/Y/R/B/O	NT_005034	AC022576	212077429	1
S/G/Y/R/B/O	NT_005034	M19364	212128538	3	RH71454	2	640.43					2	AC018961, AC093698,	AC018961, AC093698, M19364
S/G/Y/R/B/O	NT_005034	M19364	212131141	3	RH69065	2	645.51					2	AC018961, AC093698,	AC018961, AC093698, M19364
S/G/Y/R/B/O	NT_005034	AC016697	212163723	3	RH71373	2	644.59					2	AC018961, AC093698,	AC016697, AC018961, AC093698
S/G/Y/R/B/O	NT_005034	AC016697	212239247	3	RH81021	2	647.29					1		AC016697
S/G/Y/R/B/O	NT_005034	AC016697	212239873	3	RH47131	2	645.51					1		AC016697
S/G/Y/R/B/O	NT_005034	AC016697	212243732	3	RH38164			2	9099.00			1		AC016697
S/G/Y/R/B/O	NT_005034	AC016697	212244616	3	RH41922	2	646.14					1		AC016697
S/G/Y/R/B/O	NT_005034	AC016697	212248560	3	RH68077	2	641.85					1		AC016697
S/G/Y/R/B/O	NT_005034	AC016697	212283749	3	WI-1247					2	971.70	1		AC016697
S/G/Y/R/B/O	NT_005034	AC012362	212358970	3	RH56761	2	646.14			2	972.60	1		AC012362
S/G/Y/R/B/O	NT_005034	AC012362	212360872	3	RH16641	2	645.62					1		AC012362
S/G/Y/R/B/O	NT_005034	AC012362	212400316	3	RH46387	X	247.00					2	AL359740,	AC012362, AL359740
S/G/Y/R/B/O	NT_005034	AC019185	212496653	3	RH14679			2	9104.00	2	970.40	1		AC010822, AC019185, U47129
S/G/Y/R/B/O	NT_005034	AC019185	212496653	3	RH56861	2	641.75					1		AC010822, AC019185, U47129
S/G/Y/R/B/O	NT_005034	AC019185	212497274	3	RH70646	2	641.85					1		AC010822, AC019185, U47129
S/G/Y/R/B/O	NT_005034	AC079147	212633523	3
S/G/Y/R/B/O	NT_005034	AC067944	212715947	3
S/G/Y/R/B/O	NT_005034	AC109824	212822046	1
S/G/Y/R/B/O	NT_005034	AC079308	212903847	3
S/G/Y/R/B/O	NT_005034	AC069205	213034209	3	AFM224ZD6					2	980.40	2	AC069063, AC079308,	AC069063, AC069205, AC079308
S/G/Y/R/B/O	NT_005034	AC013409	213150652	3	RH71346	2	644.49					2	AC018961, AC093698,	AC013409, AC018961, AC093698
S/G/Y/R/B/O	NT_005034	AC016743	213237746	3
S/G/Y/R/B/O	NT_005034	AC019106	213490631	3	RH48276	2	650.64					1		AC019106
S/G/Y/R/B/O	NT_005034	AC108072	213585978	3	CHLC.GATA26B05					2	979.80	1		AC108072
S/G/Y/R/B/O	NT_005034	AC079833	213682238	3	CHLC.GATA29A06					2	975.90	1		AC079833
S/G/Y/R/B/O	NT_005034	AC006385	213693985	3	RH56869	2	647.82	2	9098.00	2	975.70	1		AC006385
S/G/Y/R/B/O	NT_005034	AC006385	213734457	3	RH56195	2	651.17			2	978.70	1		AC006385, U32996
S/G/Y/R/B/O	NT_005034	AC006385	213736795	3	RH66399	2	645.82					1		AC006385, U32996
S/G/Y/R/B/O	NT_005034	AC006385	213835947	3	RH56222	2	647.29			2	975.50	1		AC006385
S/G/Y/R/B/O	NT_005034	AC006464	213917567	3	AFMB299WB5					2	977.10	1		AC006464
S/G/Y/R/B/O	NT_005034	AC007038	214001313	3	RH26586	2	649.21					1		AC007038, AC084283
S/G/Y/R/B/O	NT_005034	AC007038	214024045	3	RH91925	2	646.55					1		AC007038, AC084283

NT_005034 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005034	AC007038	214025625	3	RH18489	2	649.21					1		AC007038, AC084283
S/G/Y/R/B/O	NT_005034	AC007038	214031883	3	RH92726	2	645.93					1		AC007038, AC084283
S/G/Y/R/B/O	NT_005034	AC006994	214100844	3	RH56286	2	649.00			2	977.10	1		AC006994
S/G/Y/R/B/O	NT_005034	AC006994	214100844	3	RH32815			2	9001.00			1		AC006994
S/G/Y/R/B/O	NT_005034	AC006994	214100925	3	RH35957	2	645.51					1		AC006994
S/G/Y/R/B/O	NT_005034	AC006994	214190990	3	RH37884			2	9294.00			1		AC006994
S/G/Y/R/B/O	NT_005034	AC006994	214191295	3	RH69173	2	647.08					1		AC006994
S/G/Y/R/B/O	NT_005034	AC006994	214191708	3	RH80284	2	648.04					1		AC006994
S/G/Y/R/B/O	NT_005034	AC006994	214236572	3	RH70499	2	647.98					1		AC006994
S/G/Y/R/B/O	NT_005034	AC006994	214236635	3	RH56162	2	650.36	2	9294.00	2	979.10	1		AC006994
S/G/Y/R/B/O	NT_005034	AC097525	214250042	3
S/G/Y/R/B/O	NT_005034	AC021150	214303556	3
S/G/Y/R/B/O	NT_005034	AC007970	214434250	3	RH38066			2	9100.00			1		AC007970, AC037443, AC092163, AJ289239
S/G/Y/R/B/O	NT_005034	AC007970	214434319	3	RH68160	2	647.98					1		AC007970, AC037443, AC092163, AJ289239
S/G/Y/R/B/O	NT_005034	AC007970	214434419	3	RH25693	2	648.04					1		AC007970, AC037443, AC092163, AJ289239
S/G/Y/R/B/O	NT_005034	AC007970	214436139	3	RH56620	2	651.59			2	981.20	1		AC007970, AC037443, AC092163, AJ289239
S/G/Y/R/B/O	NT_005034	AC007970	214463673	3	RH98466	2	649.94					1		AC007970, AC037443, AC092163
S/G/Y/R/B/O	NT_005034	AC007970	214473081	3	RH69510	2	646.76					1		AC007970, AC037443, AC092163
S/G/Y/R/B/O	NT_005034	AC008172	214569398	3	RH12253	2	650.26					1		AC008172
S/G/Y/R/B/O	NT_005034	AC008172	214622697	3	RH70149	2	646.82					1		AC008172
S/G/Y/R/B/O	NT_005034	AC008172	214661779	3	RH67625	2	646.76					1		AC008172
S/G/Y/R/B/O	NT_005034	AC008172	214680982	3	RH14071			2	9254.00			1		AC008172
S/G/Y/R/B/O	NT_005034	AC008172	214681230	3	RH68320	2	646.76					1		AC008172
S/G/Y/R/B/O	NT_005034	AC008172	214681752	3	RH56646	2	649.00	2	9254.00	2	974.30	1		AC008172
S/G/Y/R/B/O	NT_005034	AC007968	214709490	3
S/G/Y/R/B/O	NT_005034	AC084013	214853609	3
S/G/Y/R/B/O	NT_005034	AC012356	214957213	3
S/G/Y/R/B/O	NT_005034	AC012491	215111903	3	WI-10367					2	983.30	1		AC010823, AC012491
S/G/Y/R/B/O	NT_005034	AC012491	215209549	3	CHLC.GATA25C08					2	982.40	1		AC012491
S/G/Y/R/B/O	NT_005034	AC013404	215272244	3
S/G/Y/R/B/O	NT_005034	AC012069	215385344	1	RH68995	2	649.21					1		AC012069, AC069186
S/G/Y/R/B/O	NT_005034	AC012069	215451329	1	RH13657	2	653.80					1		AC012069, AC069186
S/G/Y/R/B/O	NT_005034	AC012069	215694492	1	RH66152	2	622.75					2	AC010746, AC105249,	AC010746, AC012069, AC105249
S/G/Y/R/B/O	NT_005034	AC108220	215482992	3	RH56319	2	651.77			2	983.90	1		AC108220
S/G/Y/R/B/O	NT_005034	AC108220	215483000	3	RH15943	2	653.80					1		AC108220
S/G/Y/R/B/O	NT_005034	AC068970	215538451	3	AFMA052YB9					2	983.80	1		AC068970
S/G/Y/R/B/O	NT_005034		-		RH12115	2	649.41					0
S/G/Y/R/B/O	NT_005034		-		RH657			2	9242.00			1	AC093865,	AC093865
S/G/Y/R/B/O	NT_005034		-		RH17353	2	647.98					2	AC018737, AC092635,	AC016063, AC018737, AC092635