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  Chromosome 2 - RH Maps - Single Contig
 

Chromosome 2 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033005 NT_022221 NT_022139 NT_022270 NT_022194 NT_022327 NT_005334 NT_033008
NT_033000 NT_005214 NT_033002 NT_022227 NT_015926 NT_005204 NT_030589 NT_005367
NT_015120 NT_026239 NT_005389 NT_005399 NT_005375 NT_032985 NT_032982 NT_032996
NT_033007 NT_033006 NT_032984 NT_032999 NT_022354 NT_033004 NT_022184 NT_005322
NT_022143 NT_015805 NT_033003 NT_032992 NT_029235 NT_032994 NT_022300 NT_026970
NT_032987 NT_022171 NT_032997 NT_005429 NT_005224 NT_029895 NT_022240 NT_031762
NT_032990 NT_019306 NT_026982 NT_030595 NT_022222 NT_029927 NT_005079 NT_022135
NT_032991 NT_022140 NT_029911 NT_028068 NT_030590 NT_005058 NT_029926 NT_005129
NT_022172 NT_005273 NT_005435 NT_005151 NT_031761 NT_022154 NT_005343 NT_005332
NT_025652 NT_032998 NT_005265 NT_005031 NT_022339 NT_030600 NT_022197 NT_005483
NT_005062 NT_022155 NT_032995 NT_005190 NT_030603 NT_005417 NT_028103 NT_033001
NT_005037 NT_005229 NT_005370 NT_005034 NT_005078 NT_005486 NT_031748 NT_005337
NT_005403 NT_032986 NT_022115 NT_005414 NT_022315 NT_005120 NT_022173 NT_022388
NT_005416 NT_005472 NT_022250 NT_032981 NT_026250


  NT_005079
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005079AC1080591221687841RH565062460.93    1 AC108059
S/G/Y/R/B/O NT_005079AC1080591221687841WI-12634    2743.101 AC108059
S/G/Y/R/B/O NT_005079AC1080591221911421RH14251  26269.00  1 AC108059
S/G/Y/R/B/O NT_005079AC0170791223231263RH932882462.16    1 AC017079
S/G/Y/R/B/O NT_005079AC0170791223320423RH569092461.65    1 AC017079
S/G/Y/R/B/O NT_005079AC0170791223320423WI-18004    2742.501 AC017079
S/G/Y/R/B/O NT_005079AC0170791223332663RH1036642457.79    1 AC017079
S/G/Y/R/B/O NT_005079AC0170791223349243RH927382462.47    1 AC017079
S/G/Y/R/B/O NT_005079AC0132771224425451          
S/G/Y/R/B/O NT_005079AC0205911225650903          
S/G/Y/R/B/O NT_005079AC0124511227651383AFMA153WB1    2742.401 AC012451, AC018875, AC037478
S/G/Y/R/B/O NT_005079AC0132801228544863WI-4023    2742.401 AC013280, AC037478
S/G/Y/R/B/O NT_005079AC0167481229838813          
S/G/Y/R/B/O NT_005079AC0684831231646573          
S/G/Y/R/B/O NT_005079AC0795861233451643RH38232  26303.00  1 AC079586
S/G/Y/R/B/O NT_005079AC0795861233452583RH658672457.35    1 AC079586
S/G/Y/R/B/O NT_005079AC0795861233742363RH426992464.1826318.00  1 AC013732
S/G/Y/R/B/O NT_005079AC0795861233831713RH657112461.55    1 AC013732, AC079586
S/G/Y/R/B/O NT_005079AC0795861233871773RH453812457.24    1 AC013732, AC079586
S/G/Y/R/B/O NT_005079AC0730881234680743          
S/G/Y/R/B/O NT_005079AC0190501235217873          
S/G/Y/R/B/O NT_005079AC1045991236729073          
S/G/Y/R/B/O NT_005079AC0798951236821133          
S/G/Y/R/B/O NT_005079AC0842081239473143WI-4349    2742.801 AC079450, AC084208
S/G/Y/R/B/O NT_005079AC0797761241210643RH262572480.55    2AC018865, AC073869, AC018865, AC073869, AC079776
S/G/Y/R/B/O NT_005079AC0797761241212903RH714352467.43    2AC018865, AC073869, AC018865, AC073869, AC079776
S/G/Y/R/B/O NT_005079AC0797761241223803RH5235611271.36  11370.701 AC073334, AP002993
S/G/Y/R/B/O NT_005079AC0797761241470083RH5194811342.30  11449.701AC073869, AL512310, AP000534, AC073869, AC079776, AL512310, AP000534
S/G/Y/R/B/O NT_005079AC0797761241668643RH983152467.33    4AC010984, AC092602, AL512310, AP000534, AC010984, AC079776, AC092602, AL512310, AP000534
S/G/Y/R/B/O NT_005079AC0188651241675131          
S/G/Y/R/B/O NT_005079AC0188041242918063RH168382467.43    2AC093838, AC104778, AC018804, AC022629, AC093838, AC104778
S/G/Y/R/B/O NT_005079AC0188041243298353RH984462466.51    3AC073869, AC007664, AC018804, AC022629, AC073869
S/G/Y/R/B/O NT_005079AC0233471244832033WI-9854    2731.501 AC023347
S/G/Y/R/B/O NT_005079AC0233471245434573RH486602456.09    1 AC023347
S/G/Y/R/B/O NT_005079AC0231531245634113          
S/G/Y/R/B/O NT_005079AC1070661245975343          
S/G/Y/R/B/O NT_005079AC1073821247091303          
S/G/Y/R/B/O NT_005079AC0134741248431793RH1032532458.30    1 AC013474
S/G/Y/R/B/O NT_005079AC0134741248580583RH933752456.52    1 AC013474
S/G/Y/R/B/O NT_005079AC0134741248811303RH179472458.73    1 AC013474
S/G/Y/R/B/O NT_005079AC0134741248909883RH42847  26201.00  1 AC013474
S/G/Y/R/B/O NT_005079AC0134741248956003RH108192458.30    1 AC013474
S/G/Y/R/B/O NT_005079AC0134741248960423RH8776  26090.00  1 AC013474
S/G/Y/R/B/O NT_005079AC0679621249078983          
S/G/Y/R/B/O NT_005079AC1148041249794631          
S/G/Y/R/B/O NT_005079AC0132631249799011          
S/G/Y/R/B/O NT_005079AC0123061250016823RH419442460.11    1 AC012306, AC069195
S/G/Y/R/B/O NT_005079AC0123061250035753RH570122459.7826240.00  1 AC012306, AC069195
S/G/Y/R/B/O NT_005079AC0123061250035753SGC33543    2723.501 AC012306, AC069195
S/G/Y/R/B/O NT_005079AC0123061250243803RH566922459.78    1 AC012306, AC069195


  NT_005079 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005079AC0123061250243803WI-15148    2723.501 AC012306, AC069195
S/G/Y/R/B/O NT_005079AC0123061250445963RH472412459.78    1 AC012306, AC069195
S/G/Y/R/B/O NT_005079AC0123061250448683RH260142457.35    1 AC012306, AC069195
S/G/Y/R/B/O NT_005079AC0123061251053613AFMA204XE5    2742.401 AC069195
S/G/Y/R/B/O NT_005079AC0123061251234853RH563362459.78    2U89387, AC012306, AC069195, U89387
S/G/Y/R/B/O NT_005079AC0123061251234853WI-17503    2742.502U89387, AC012306, AC069195, U89387
S/G/Y/R/B/O NT_005079AC0060111251395093RH109682462.47    2U89387, AC006011, AC069195, U89387
S/G/Y/R/B/O NT_005079AC0060111251424983RH562102462.47    1 AC006011, AC069195
S/G/Y/R/B/O NT_005079AC0060111251424983WI-16718    2723.501 AC006011, AC069195
S/G/Y/R/B/O NT_005079AC0060111252229063RH561962462.4726264.00  1AC013263, AC006011, AC013263
S/G/Y/R/B/O NT_005079AC0060111252229063SGC30980    2723.501AC013263, AC006011, AC013263
S/G/Y/R/B/O NT_005079AC0060111252236423RH1043852480.97    1AC013263, AC006011, AC013263, AL390202
S/G/Y/R/B/O NT_005079AC0060111252307193RH38158  26269.00  1AC013263, AC006011, AC013263, AL390202
S/G/Y/R/B/O NT_005079AC0060111252496313RH158692459.78    1AC013263, AC006011, AC013263
S/G/Y/R/B/O NT_005079AC0060111252506343RH14295  26290.00  1AC013263, AC006011, AC013263
S/G/Y/R/B/O NT_005079AC0060111252800633RH561792457.03    1AC013263, AC006011, AC013263
S/G/Y/R/B/O NT_005079AC0060111252800633SGC31777    2743.301AC013263, AC006011, AC013263
S/G/Y/R/B/O NT_005079AC0060111252801633RH171472462.16    1AC013263, AC006011, AC013263
S/G/Y/R/B/O NT_005079AC0060111252802773RH682152462.47    1AC013263, AC006011, AC013263
S/G/Y/R/B/O NT_005079AC0060111252825783RH262942460.40    1AC013263, AC006011, AC013263
S/G/Y/R/B/O NT_005079AC0741141252847853RH680712462.47    1AC006011, AC006011, AC074114
S/G/Y/R/B/O NT_005079AC0741141252849743RH1032922461.74    1AC006011, AC013263, AC006011, AC013263, AC074114
S/G/Y/R/B/O NT_005079AC0109761253337103RH565212462.47    1AC074114, AC010976, AC074114
S/G/Y/R/B/O NT_005079AC0109761253337103WI-13493    2723.501AC074114, AC010976, AC074114
S/G/Y/R/B/O NT_005079AC0109761253345503RH706032462.47    1AC074114, AC010976, AC074114
S/G/Y/R/B/O NT_005079AC0109761253354853RH267342456.75    1 AC010976
S/G/Y/R/B/O NT_005079AC0109761253476473RH683972461.86    1 AC010976
S/G/Y/R/B/O NT_005079AC0109761253476883RH74576  26429.00  1 AC010976
S/G/Y/R/B/O NT_005079AC0109761254754533RH660402456.48    1AC068282, AC010976, AC068282
S/G/Y/R/B/O NT_005079AC0109761254811853RH568152458.3026193.00  1AC068282, AC010976, AC068282
S/G/Y/R/B/O NT_005079AC0109761254811853SGC32141    2723.501AC068282, AC010976, AC068282
S/G/Y/R/B/O NT_005079AC0109761254813353RH269782457.79    1AC068282, AC010976, AC068282
S/G/Y/R/B/O NT_005079AC0109761255041833RH172832458.73    1AC068282, AC010976, AC068282
S/G/Y/R/B/O NT_005079AC0109761255052353RH252162455.60    1AC068282, AC010976, AC068282
S/G/Y/R/B/O NT_005079AC0109761255053043RH99392458.73    1AC068282, AC068282
S/G/Y/R/B/O NT_005079AC0109761255053083RH115292456.70    1AC068282, AC010976, AC068282
S/G/Y/R/B/O NT_005079AC0109761255171573RH930122457.35    1AC068282, AC010976, AC068282
S/G/Y/R/B/O NT_005079AC0682821255959061RH919152455.87    1 AC068282
S/G/Y/R/B/O NT_005079AC0682821256287151RH674152458.30    1 AC068282
S/G/Y/R/B/O NT_005079AC0682821256427221RH31637  26178.00  1 AC068282
S/G/Y/R/B/O NT_005079AC1109261256645431RH711432457.68    1 AC110926
S/G/Y/R/B/O NT_005079AC1109261257783941RH1021232456.20    1 AC110926
S/G/Y/R/B/O NT_005079AC0922071256621491          
S/G/Y/R/B/O NT_005079AC0271421261188041RH691202458.30    1 AC027142
S/G/Y/R/B/O NT_005079AC0271421261189161RH565772458.3026206.00  1 AC027142
S/G/Y/R/B/O NT_005079AC0271421261189161D2S2558    2724.901 AC027142
S/G/Y/R/B/O NT_005079AC0125081259504933RH119042457.35    1 AC012508, AC114783
S/G/Y/R/B/O NT_005079AC0974491260788283RH985292458.01    1 AC097449, AC114783
S/G/Y/R/B/O NT_005079 - RH1019322450.58    1AC013399, AC079988, AC013399, AC079988
S/G/Y/R/B/O NT_005079 - RH1045  25953.00  0  


  NT_005079 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005079 - RH1019702456.52    0AC110926, AC110926
S/G/Y/R/B/O NT_005079 - RH1083  26006.00  1AC018737, AC016063, AC018737
S/G/Y/R/B/O NT_005079 - RH1024912438.48    1AC069154, AC069154
S/G/Y/R/B/O NT_005079 - RH14051  25847.00  1AC016736, AC016736
S/G/Y/R/B/O NT_005079 - RH1028132452.58    1AC018737, AC016063, AC018737
S/G/Y/R/B/O NT_005079 - RH14676  25896.00  1AC011742, AC011742
S/G/Y/R/B/O NT_005079 - RH1032542435.12    1AC009303, AC023659, AC009303, AC023659
S/G/Y/R/B/O NT_005079 - RH14685  26297.00  1AC068137, AC068137
S/G/Y/R/B/O NT_005079 - RH1033662452.51    1AC018737, AC018737
S/G/Y/R/B/O NT_005079 - RH1035672438.30    1AC016691, AC104668, AC016691, AC068092, AC104668
S/G/Y/R/B/O NT_005079 - RH1036432452.40    1AC012447, AC012447
S/G/Y/R/B/O NT_005079 - RH1040302435.12    1AC012665, AC012665
S/G/Y/R/B/O NT_005079 - RH114342436.11    1AC012363, AC114732, AC012363, AC114732
S/G/Y/R/B/O NT_005079 - RH117082434.75    1AC009303, AC009303
S/G/Y/R/B/O NT_005079 - RH118892454.00    1AC010901, AC009624, AC010901
S/G/Y/R/B/O NT_005079 - RH119852432.70    1AC009303, AC023659, AC009303, AC023659
S/G/Y/R/B/O NT_005079 - RH122522437.47    1AC012363, AC012363
S/G/Y/R/B/O NT_005079 - RH123152452.51    1AC013399, AC079988, AC013399, AC079988
S/G/Y/R/B/O NT_005079 - RH125642452.51    1AC018737, AC016063, AC018737
S/G/Y/R/B/O NT_005079 - RH149992444.59    0  
S/G/Y/R/B/O NT_005079 - RH153272458.4126094.00  1AC008275, AC008275
S/G/Y/R/B/O NT_005079 - RH154012453.45    1AC108219, AC108219
S/G/Y/R/B/O NT_005079 - RH31632  25904.00  1AC114732, AC114732
S/G/Y/R/B/O NT_005079 - RH154332430.67    1AC079762, AC079762
S/G/Y/R/B/O NT_005079 - RH31635  25964.00  1AC011246, AC011246
S/G/Y/R/B/O NT_005079 - RH166822452.90    1AC010901, AC009624, AC010901, AC092426
S/G/Y/R/B/O NT_005079 - RH31636  26133.00  1AC097499, AC097499
S/G/Y/R/B/O NT_005079 - RH169972440.41    1AC012363, AC012363
S/G/Y/R/B/O NT_005079 - RH250682444.59    1AC018737, AC018737
S/G/Y/R/B/O NT_005079 - RH251272452.29    1AC012363, AC012363, AC068092
S/G/Y/R/B/O NT_005079 - RH255072444.59    1AC018737, AC016063, AC018737
S/G/Y/R/B/O NT_005079 - RH419822442.35    1AC079449, AC079449
S/G/Y/R/B/O NT_005079 - RH460682446.20    1AC018737, AC018737
S/G/Y/R/B/O NT_005079 - RH469112435.12    1AC013457, AC013457
S/G/Y/R/B/O NT_005079 - RH475902443.17    1AC018737, AC016063, AC018737
S/G/Y/R/B/O NT_005079 - RH477092452.62    1AC019110, AC019110
S/G/Y/R/B/O NT_005079 - RH481982435.12    1  
S/G/Y/R/B/O NT_005079 - RH494792440.31    1AC016764, AC016764
S/G/Y/R/B/O NT_005079 - RH50342436.15    1AC017033, AC017033, AC019078
S/G/Y/R/B/O NT_005079 - RH560892437.26    1AC012363, AC012363, AC068092
S/G/Y/R/B/O NT_005079 - RH562082437.57    1AC069154, AC016076, AC069154
S/G/Y/R/B/O NT_005079 - RH562812438.07    1AC104668, AC015719, AC104668
S/G/Y/R/B/O NT_005079 - RH563562448.4525868.00  1AC011246, AC011246
S/G/Y/R/B/O NT_005079 - RH565652466.51    1AC009477, AC009477
S/G/Y/R/B/O NT_005079 - RH566482448.37    1AC018737, AC016063, AC018737
S/G/Y/R/B/O NT_005079 - RH567322435.69    1AC016736, AC016736
S/G/Y/R/B/O NT_005079 - RH567812455.2126087.00  1AC019105, AC019105, AC023003
S/G/Y/R/B/O NT_005079 - RH568042452.6225930.00  1AC012447, AC012447
S/G/Y/R/B/O NT_005079 - RH568122433.82    1AC009303, AC009303
S/G/Y/R/B/O NT_005079 - RH568372432.78    1AC009404, AC009404


  NT_005079 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005079 - RH568432437.4425985.00  1AC041008, AC092455, AC104668, AC015719, AC041008, AC092455, AC104668
S/G/Y/R/B/O NT_005079 - RH569012452.51    1AC013399, AC079988, AC013399, AC079988
S/G/Y/R/B/O NT_005079 - RH37919  25925.00  1AC016691, AC104668, AC016691, AC068092, AC104668
S/G/Y/R/B/O NT_005079 - RH570532433.92    1AC009404, AC009404
S/G/Y/R/B/O NT_005079 - RH439  26423.00  1 AC106815
S/G/Y/R/B/O NT_005079 - RH570932452.79    1AC012363, AC012363
S/G/Y/R/B/O NT_005079 - RH691  26120.00  1AC009956, AC009956
S/G/Y/R/B/O NT_005079 - RH571052427.01    1AC016721, AC016721
S/G/Y/R/B/O NT_005079 - RH8639  26034.00  1AC012665, AC012665
S/G/Y/R/B/O NT_005079 - RH571442434.65    1AC009303, AC023659, AC009303, AC023659
S/G/Y/R/B/O NT_005079 - RH8829  25887.00  1AC012363, AC012363
S/G/Y/R/B/O NT_005079 - RH654162434.03    1AC009312, AC009312
S/G/Y/R/B/O NT_005079 - RH901  26399.00  0  
S/G/Y/R/B/O NT_005079 - RH669502443.17    1AC018737, AC016063, AC018737
S/G/Y/R/B/O NT_005079 - RH670582427.49    1AC016721, AC016721
S/G/Y/R/B/O NT_005079 - RH686352440.31    1AC016764, AC016764
S/G/Y/R/B/O NT_005079 - RH686492444.49    1AC011246, AC011246
S/G/Y/R/B/O NT_005079 - RH687652437.54    1AC041008, AC092455, AC104668, AC015719, AC041008, AC092455, AC104668
S/G/Y/R/B/O NT_005079 - RH688682437.57    1AC013275, AC013275, AC016076, AC107306
S/G/Y/R/B/O NT_005079 - RH691312438.48    1  
S/G/Y/R/B/O NT_005079 - RH699582437.16    1AC013275, AC013275, AC016076, AC107306
S/G/Y/R/B/O NT_005079 - RH704582434.65    1AC012665, AC012665
S/G/Y/R/B/O NT_005079 - RH706472456.31    0AC068282, AC068282, AF378903, M11228
S/G/Y/R/B/O NT_005079 - RH707992462.47    0  
S/G/Y/R/B/O NT_005079 - RH709152444.59    1AC018737, AC018737
S/G/Y/R/B/O NT_005079 - RH808852456.09    0AC013269, AC013269, AC018804, AC020679, AC093838, AP001465, AC013269, AC013269, AC018804, AC020679, AC060814, AC060814, AC093838, AL163203, AP001465
S/G/Y/R/B/O NT_005079 - RH809272452.51    1AC013399, AC079988, AC013399, AC079988
S/G/Y/R/B/O NT_005079 - RH916592452.29    1AC013275, AC013275, AC016076, AC107306
S/G/Y/R/B/O NT_005079 - RH918372437.47    1AC016691, AC104668, AC015719, AC016691, AC104668
S/G/Y/R/B/O NT_005079 - RH921692440.41    1AC114732, AC114732
S/G/Y/R/B/O NT_005079 - RH925942457.14    0  
S/G/Y/R/B/O NT_005079 - RH926712442.35    1AC016764, AC016764
S/G/Y/R/B/O NT_005079 - RH931102437.57    1AC016691, AC104668, AC016691, AC068092, AC104668
S/G/Y/R/B/O NT_005079 - RH941542436.78    1AC016764, AC016764
S/G/Y/R/B/O NT_005079 - RH982342435.27    1AC016673, AC016673
S/G/Y/R/B/O NT_005079 - RH99252435.69    1AC016736, AC016736
S/G/Y/R/B/O NT_005079 - RH993272435.27    1AC016736, AC016736