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  Chromosome 2 - RH Maps - Single Contig
 

Chromosome 2 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033005 NT_022221 NT_022139 NT_022270 NT_022194 NT_022327 NT_005334 NT_033008
NT_033000 NT_005214 NT_033002 NT_022227 NT_015926 NT_005204 NT_030589 NT_005367
NT_015120 NT_026239 NT_005389 NT_005399 NT_005375 NT_032985 NT_032982 NT_032996
NT_033007 NT_033006 NT_032984 NT_032999 NT_022354 NT_033004 NT_022184 NT_005322
NT_022143 NT_015805 NT_033003 NT_032992 NT_029235 NT_032994 NT_022300 NT_026970
NT_032987 NT_022171 NT_032997 NT_005429 NT_005224 NT_029895 NT_022240 NT_031762
NT_032990 NT_019306 NT_026982 NT_030595 NT_022222 NT_029927 NT_005079 NT_022135
NT_032991 NT_022140 NT_029911 NT_028068 NT_030590 NT_005058 NT_029926 NT_005129
NT_022172 NT_005273 NT_005435 NT_005151 NT_031761 NT_022154 NT_005343 NT_005332
NT_025652 NT_032998 NT_005265 NT_005031 NT_022339 NT_030600 NT_022197 NT_005483
NT_005062 NT_022155 NT_032995 NT_005190 NT_030603 NT_005417 NT_028103 NT_033001
NT_005037 NT_005229 NT_005370 NT_005034 NT_005078 NT_005486 NT_031748 NT_005337
NT_005403 NT_032986 NT_022115 NT_005414 NT_022315 NT_005120 NT_022173 NT_022388
NT_005416 NT_005472 NT_022250 NT_032981 NT_026250


  NT_005334
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005334AC02395697946681          
S/G/Y/R/B/O NT_005334AC06777197999231          
S/G/Y/R/B/O NT_005334AC074003158457631RH9399311309.41    5AC009237, AC024234, AC060830, AC060830, AP000827, AP002369, AP003122, AP004607, AC009237, AC024234, AC060830, AC060830, AC074003, AP000827, AP002369, AP003122, AP004607
S/G/Y/R/B/O NT_005334AC010145100300643RH69067256.35    1 AC010145, M13241, Y00664
S/G/Y/R/B/O NT_005334AC010145100371303RH17899256.45    1 AC010145, M63717, Y00664
S/G/Y/R/B/O NT_005334AC010145100412683RH67659256.45    1 AC010145
S/G/Y/R/B/O NT_005334AC113608100612781          
S/G/Y/R/B/O NT_005334AC007240102132083RH92352239.80    1 AC007240
S/G/Y/R/B/O NT_005334AC007240103388713WI-4400    251.201 AC007240
S/G/Y/R/B/O NT_005334AC007249103513533RH69378239.80    1 AC007249
S/G/Y/R/B/O NT_005334AC007249104177723RH74402242.02    1 AC007249
S/G/Y/R/B/O NT_005334AC007249104410893RH17383239.80    1 AC007249
S/G/Y/R/B/O NT_005334AC007249104415983RH56662246.29  254.501 AC007249, AC073952
S/G/Y/R/B/O NT_005334AC007249104417273RH11957239.80    1 AC007249, AC073952
S/G/Y/R/B/O NT_005334AC007249104548263RH11814239.70    1 AC007249, AC073952, M31061, M33764, M34158, M81740, X16277
S/G/Y/R/B/O NT_005334AC007249104550183RH70838244.25    1 AC007249, AC073952, M31061, M33764, M34158, M81740, X16277
S/G/Y/R/B/O NT_005334AC007314105860753RH18306237.31    1 AC007314, AC073952
S/G/Y/R/B/O NT_005334AC007314105860993WI-13097    251.201 AC007314, AC073952
S/G/Y/R/B/O NT_005334AC007314105860993RH57129245.88    1 AC007314, AC073952
S/G/Y/R/B/O NT_005334AC007314105861733RH12648237.31    1 AC007314, AC073952
S/G/Y/R/B/O NT_005334AC007314106177483RH12306237.31    1 AC007314
S/G/Y/R/B/O NT_005334AC007314106241963RH69302237.31    1 AC007314
S/G/Y/R/B/O NT_005334AC092687107978193RH70399237.31    1 AC092687
S/G/Y/R/B/O NT_005334AC092687107982293SGC31703    251.201 AC092687
S/G/Y/R/B/O NT_005334AC092687107982293RH56600238.48    1 AC092687
S/G/Y/R/B/O NT_005334AC092687107982863RH11818245.83    1 AC092687
S/G/Y/R/B/O NT_005334AC092687107991613WI-18107    251.201 AC092687
S/G/Y/R/B/O NT_005334AC092687107991613RH56772246.14    1 AC092687
S/G/Y/R/B/O NT_005334AC079587108764963          
S/G/Y/R/B/O NT_005334AC019041109284353RH66890235.92    1 AC019041
S/G/Y/R/B/O NT_005334AC019041109833313RH33235  2334.00  1 AC019041
S/G/Y/R/B/O NT_005334AC062028111096553          
S/G/Y/R/B/O NT_005334AC018463111929723RH18382237.31    1 AC018463
S/G/Y/R/B/O NT_005334AC018463111941893RH17249237.31    1 AC018463
S/G/Y/R/B/O NT_005334AC018463111952953RH64849237.31    1 AC018463
S/G/Y/R/B/O NT_005334AC018463113196933RH74403250.25    1 AC018463
S/G/Y/R/B/O NT_005334AC018463113395383RH56986246.602346.00251.201 AC018463
S/G/Y/R/B/O NT_005334AC099344113529973RH22786237.31    1 AC099344
S/G/Y/R/B/O NT_005334AC099344113769773WI-10844    274.401 AC099344
S/G/Y/R/B/O NT_005334AC099344114130883AFMA305WD1    251.201 AC099344
S/G/Y/R/B/O NT_005334AC099344114266253RH56342252.66    1 AC099344
S/G/Y/R/B/O NT_005334AC099344114266253WI-15237    251.101 AC099344
S/G/Y/R/B/O NT_005334AC011994116567513RH69684235.82    1AC110754, AC011994, AC110754
S/G/Y/R/B/O NT_005334AC110754116578153          
S/G/Y/R/B/O NT_005334AC106875116813153          
S/G/Y/R/B/O NT_005334AC012456118412863RH25402252.69    1 AC012456
S/G/Y/R/B/O NT_005334AC012456118414553RH70046254.05    1 AC012456
S/G/Y/R/B/O NT_005334AC012456118804013RH102294245.99    1 AC012456
S/G/Y/R/B/O NT_005334AC080185119110553          
S/G/Y/R/B/O NT_005334AC013471119166973          


  NT_005334 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005334AC012592120597373          
S/G/Y/R/B/O NT_005334AC019090122152193          
S/G/Y/R/B/O NT_005334AC012509124672253CHLC.GGAT2F11.1214    261.101 AC012509
S/G/Y/R/B/O NT_005334AC073971125083203          
S/G/Y/R/B/O NT_005334AC096559125923973          
S/G/Y/R/B/O NT_005334AC009486127556603RH12705256.04    1 AC009486
S/G/Y/R/B/O NT_005334AC009486127568063RH12451256.14    1 AC009486
S/G/Y/R/B/O NT_005334AC068976128711923AFMA323ZH1    258.201 AC068976, AC087803
S/G/Y/R/B/O NT_005334AC064875129178643          
S/G/Y/R/B/O NT_005334AC008271132146073WI-5509    276.901 AC008271
S/G/Y/R/B/O NT_005334AC008278132789793RH17230256.35    1 AC008278
S/G/Y/R/B/O NT_005334AC007738133686213          
S/G/Y/R/B/O NT_005334AC074184135518593          
S/G/Y/R/B/O NT_005334AC008282135580183AFMB313ZH5    272.302AC068223, AC008282, AC068223
S/G/Y/R/B/O NT_005334AC008282137428683RH56884255.04  261.301 AC008282
S/G/Y/R/B/O NT_005334AC008282137429383RH12241274.74    1 AC008282
S/G/Y/R/B/O NT_005334AC008274138225403RH42352258.47  260.701 AC008274
S/G/Y/R/B/O NT_005334AC010988139050693RH46168258.67    1 AC010988
S/G/Y/R/B/O NT_005334AC068286139776413          
S/G/Y/R/B/O NT_005334AC079253141150723          
S/G/Y/R/B/O NT_005334AC011897142592203RH56545258.47  261.301AC067771, AC011897, AC067771
S/G/Y/R/B/O NT_005334AC011897142592203RH32383  2303.00  1AC067771, AC011897, AC067771
S/G/Y/R/B/O NT_005334AC011897142593193RH26254256.76    1AC067771, AC011897, AC067771
S/G/Y/R/B/O NT_005334AC011897142728213RH10271256.45    1AC067771, AC011897, AC067771
S/G/Y/R/B/O NT_005334AC011897142740753RH99165256.45    1AC067771, AC011897, AC067771
S/G/Y/R/B/O NT_005334AC111002143272571          
S/G/Y/R/B/O NT_005334AC093912144903943D2S131    261.001 AC093912
S/G/Y/R/B/O NT_005334AC093912144903943RH13282254.21    1 AC093912
S/G/Y/R/B/O NT_005334AC104774145700663          
S/G/Y/R/B/O NT_005334AC073062146839283          
S/G/Y/R/B/O NT_005334AC092635149069483CHLC.GATA3C03    259.401 AC092635
S/G/Y/R/B/O NT_005334AC092635149177153RH173532647.98    2AC018737, AC016063, AC018737, AC092635
S/G/Y/R/B/O NT_005334AC092635149183863RH66898256.07    1 AC092635
S/G/Y/R/B/O NT_005334AC016730149410673          
S/G/Y/R/B/O NT_005334AC019164151113103          
S/G/Y/R/B/O NT_005334AC068284152268533          
S/G/Y/R/B/O NT_005334AC017088154913503RH42210254.89    1 AC017088
S/G/Y/R/B/O NT_005334AC017088154913503RH711  2453.00  1 AC017088
S/G/Y/R/B/O NT_005334AC064846155338073          
S/G/Y/R/B/O NT_005334AC109816157017953          
S/G/Y/R/B/O NT_005334 - RH26076260.07    1AC104623, AC104623
S/G/Y/R/B/O NT_005334 - WI-5477    264.801AC010880, AC010880
S/G/Y/R/B/O NT_005334 - RH36676256.45    0AC011897, AC067771, AC011897, AC067771
S/G/Y/R/B/O NT_005334 - RH36798254.21    0  
S/G/Y/R/B/O NT_005334 - RH56378256.76    0AC010145, AC010145
S/G/Y/R/B/O NT_005334 - RH91555252.45    0