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  Chromosome 11 - RH Maps - Single Contig
 

Chromosome 11 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_009407 NT_009308 NT_008953 NT_008937 NT_024164 NT_033238 NT_009368 NT_028310
NT_033239 NT_009325 NT_008957 NT_024194 NT_033233 NT_033231 NT_028309 NT_030795
NT_017854 NT_009062 NT_024163 NT_024275 NT_009038 NT_009306 NT_009307 NT_030792
NT_030801 NT_024200 NT_024283 NT_033235 NT_009182 NT_033242 NT_008952 NT_024172
NT_033236 NT_024189 NT_009237 NT_024229 NT_009020 NT_024192 NT_033915 NT_009296
NT_009178 NT_008978 NT_024343 NT_027118 NT_027110 NT_030109 NT_024169 NT_033902
NT_033903 NT_033913 NT_033994 NT_033237 NT_009405 NT_033232 NT_024160 NT_030106
NT_033241 NT_033923 NT_033926 NT_033900 NT_033929 NT_033930 NT_033925 NT_033924
NT_033928 NT_024149 NT_033927 NT_033243 NT_033240 NT_008984 NT_009151 NT_033244
NT_033899 NT_030800 NT_033901


  NT_008984
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008984U73646881304813          
S/G/Y/R/B/O NT_008984AP000827881701433RH9399311309.41    5AC009237, AC024234, AC060830, AC060830, AC074003, AP002369, AP003122, AP004607, AC009237, AC024234, AC060830, AC060830, AC074003, AP000827, AP002369, AP003122, AP004607
S/G/Y/R/B/O NT_008984AP000827882861023RH42905  113976.00  1AP000648, AP000648, AP000827, AP001769
S/G/Y/R/B/O NT_008984AP000827882861893RH4627711307.76    1AP000648, AP000648, AP000827, AP001769
S/G/Y/R/B/O NT_008984AP000827883052223RH9283311309.52    1AP000648, AP000648, AP000827, AP001769
S/G/Y/R/B/O NT_008984AP000827883065013RH5196911309.41  11407.101AP000648, AP000648, AP000827, AP001769
S/G/Y/R/B/O NT_008984AP000827883065673RH2680311302.78    1AP000648, AP000648, AP000827
S/G/Y/R/B/O NT_008984AP000827883076623RH5208911309.52  11407.001AP000648, AP000648, AP000827, AP001769
S/G/Y/R/B/O NT_008984AP000648883126233          
S/G/Y/R/B/O NT_008984AP002364883952803RH4806312245.68    4AC010173, AC010173, AC011603, AC026125, AC026125, AC010173, AC010173, AC011603, AC026125, AC026125, AP002364, X01703
S/G/Y/R/B/O NT_008984AP002002884794193          
S/G/Y/R/B/O NT_008984AP001875885895303          
S/G/Y/R/B/O NT_008984AP000684886553013RH886  113999.00  1 AP000684
S/G/Y/R/B/O NT_008984AP000684886553013RH1341711309.10    1 AP000684
S/G/Y/R/B/O NT_008984AP000684887453663D11S1358    11407.201 AP000684
S/G/Y/R/B/O NT_008984AP000684887453663RH319211306.15    1 AP000684
S/G/Y/R/B/O NT_008984AP000651887605973          
S/G/Y/R/B/O NT_008984AP002782888322403          
S/G/Y/R/B/O NT_008984AP003058889826113          
S/G/Y/R/B/O NT_008984AP001002890635363          
S/G/Y/R/B/O NT_008984AP003386892260353          
S/G/Y/R/B/O NT_008984AP003485892960303          
S/G/Y/R/B/O NT_008984AP002791894610133          
S/G/Y/R/B/O NT_008984AP003421896291573          
S/G/Y/R/B/O NT_008984AP003028898050993AFM248MC9    11409.101 AC074022, AP003028
S/G/Y/R/B/O NT_008984AP003028899132683RH10273211308.59    1AP003177, AC074022, AP003028, AP003177
S/G/Y/R/B/O NT_008984AP003177899157323          
S/G/Y/R/B/O NT_008984AP003055899585783          
S/G/Y/R/B/O NT_008984AP002799901125553AFM240WB12    11409.101 AP002799
S/G/Y/R/B/O NT_008984AP003056901747603          
S/G/Y/R/B/O NT_008984AP003124903450553RH10409911308.59    1AP000722, AC021143, AP000722, AP003124
S/G/Y/R/B/O NT_008984AP003124903918053RH4857811307.97    1AP000722, AC021143, AP000722, AP003124
S/G/Y/R/B/O NT_008984AP000722904485963RH12608X138.25    1 AP000722, AP001154
S/G/Y/R/B/O NT_008984AP000722904860763D11S1332    11407.601 AP000722
S/G/Y/R/B/O NT_008984AP000805905227093          
S/G/Y/R/B/O NT_008984AP002514906779643          
S/G/Y/R/B/O NT_008984AC067807908963731RH7647811316.32    1 AC024231, AC067807, AP003718
S/G/Y/R/B/O NT_008984AC067807908964261RH9136511313.19    1 AC024231, AC067807, AP003718
S/G/Y/R/B/O NT_008984AC067807909433011RH6977911313.19    1 AC024231, AC067807, AP003718
S/G/Y/R/B/O NT_008984AC067807909433911RH5171911313.29114078.0011411.401 AC024231, AC067807, AP003718
S/G/Y/R/B/O NT_008984AP003171909519043          
S/G/Y/R/B/O NT_008984AP002371910957883RH7058611313.19    1 AC016891, AP002371
S/G/Y/R/B/O NT_008984AP003072912580243RH4615011309.41    1 AC016775, AC034173, AP003072
S/G/Y/R/B/O NT_008984AP003072912617893RH5190311313.19  11412.801 AC016775, AC034173, AP003072
S/G/Y/R/B/O NT_008984AP003072912618033RH6634011313.19    1 AC016775, AC034173, AP003072
S/G/Y/R/B/O NT_008984AP003072912619713RH5176611313.19  11412.801 AC016775, AC034173, AP003072
S/G/Y/R/B/O NT_008984AP003969913995543RH5200811313.19  11412.801 AC016775, AP003969
S/G/Y/R/B/O NT_008984AP004242916492173RH7034311313.29    1AC021755, AC025168, AC021755, AC025168
S/G/Y/R/B/O NT_008984AP003499917284483RH4221811313.09    1 AP000792, AP003499
S/G/Y/R/B/O NT_008984AP003499917284483RH972  114070.00  1 AP000792, AP003499


  NT_008984 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008984AP001273918467543RH8822  114075.00  1 AP000792, AP001273, AP001886
S/G/Y/R/B/O NT_008984AP001273918496603RH1990  114080.00  1 AP000792, AP001273, AP001886
S/G/Y/R/B/O NT_008984AP001273918763793RH9889411315.21    1AC010611, AC010611, AP000715, AP001273, AP001886
S/G/Y/R/B/O NT_008984AP001273918764653RH4007411317.27    1AC010611, AC010611, AP000715, AP001273, AP001886
S/G/Y/R/B/O NT_008984AP001894919031673RH5211111315.21114093.0011412.801 AP000715
S/G/Y/R/B/O NT_008984AP001894919032423RH6741011315.62    1 AP001886, AP001894
S/G/Y/R/B/O NT_008984AP001894919033363RH1617711315.21    1 AP000715, AP001886, AP001894
S/G/Y/R/B/O NT_008984AP001894919258063RH5179211315.21  11412.801 AP000715, AP001886, AP001894
S/G/Y/R/B/O NT_008984AP001894919266613RH10235511313.19    1 AP000715, AP001886, AP001894
S/G/Y/R/B/O NT_008984AP002795920485173          
S/G/Y/R/B/O NT_008984AP003966921953633          
S/G/Y/R/B/O NT_008984AP002784922954663RH1249911315.21    1 AF283663, AF398508, AP002784
S/G/Y/R/B/O NT_008984AP002784922961033RH10399911315.21    1 AF398508, AP002784
S/G/Y/R/B/O NT_008984AP002784922982913RH6747811315.21    1 AP002784
S/G/Y/R/B/O NT_008984AP002784922983163RH1259011315.21    1 AP002784
S/G/Y/R/B/O NT_008984AP002784922990913RH1101211315.42    1 AP002784
S/G/Y/R/B/O NT_008984AP002784922991073RH5171311315.21  11412.201 AP002784
S/G/Y/R/B/O NT_008984AP002784923022023RH9895920270.83    2AL133174, AC055879, AL133174
S/G/Y/R/B/O NT_008984AP002784924527053RH31198  114131.00  1 AP002784
S/G/Y/R/B/O NT_008984AP000765924911363RH1221111315.21    1 AP000765
S/G/Y/R/B/O NT_008984AP000765925321063RH5225611317.45  11414.401 AF303395, AP000765, AP001361
S/G/Y/R/B/O NT_008984AP000765925336393RH2735711317.48    1 AF303395, AP000765, AP001361
S/G/Y/R/B/O NT_008984AP000786925390183          
S/G/Y/R/B/O NT_008984AP000943926128533RH37820  114147.00  1 AP000670, AP000943, AP001361
S/G/Y/R/B/O NT_008984AP000943926130383RH4006111321.05    1 AP000670, AP000943, AP001361
S/G/Y/R/B/O NT_008984AP000943926590223RH2732911318.12    1 AP000943
S/G/Y/R/B/O NT_008984AP000943926594343RH5216111319.17114110.0011416.201 AP000670
S/G/Y/R/B/O NT_008984AP000943926598253RH3999111319.17    1 AP000670, AP000943, AP001361
S/G/Y/R/B/O NT_008984AP000943926598633RH1786311319.03    1 AP000670, AP000943, AP001361
S/G/Y/R/B/O NT_008984AP000943927348983RH9411911319.17    1 AP000670, AP000943
S/G/Y/R/B/O NT_008984AP000943927834843WI-10781    11416.201AP002376, AP000943, AP002376
S/G/Y/R/B/O NT_008984AP002376928730453RH18504794.66    3AC005082, AC005082, AC024199, AP002376
S/G/Y/R/B/O NT_008984AP001152929324753RH3611711319.17    1 AC011007, AP001152
S/G/Y/R/B/O NT_008984AP001152929886323RH5191411319.46  11416.201 AC023756, AP001152
S/G/Y/R/B/O NT_008984AP001152929896293RH5228511319.68  11416.201 AC023756, AP001152
S/G/Y/R/B/O NT_008984AP001152929901493RH1615111319.17    1 AC023756, AP001152
S/G/Y/R/B/O NT_008984AP001152929901813RH980811319.17    1 AC023756, AP001152
S/G/Y/R/B/O NT_008984AP002383930763273RH5207011319.17  11416.201 AC023756, AC032024, AP002383
S/G/Y/R/B/O NT_008984AP002383930767923RH6645211320.55    1 AC023756, AC032024, AP002383
S/G/Y/R/B/O NT_008984AP002383930837363RH5186811318.96  11417.501 AC023756, AC032024, AP002383
S/G/Y/R/B/O NT_008984AP002383930846803RH5184511319.17  11416.201 AC023756, AC032024
S/G/Y/R/B/O NT_008984AP001264931826333RH5203111317.37  11416.201 AC016896, AC032024, AF031165, AP001264
S/G/Y/R/B/O NT_008984AP001264931836293RH6946511319.17    1 AC016896, AC032024, AP001264
S/G/Y/R/B/O NT_008984AP001264932028353RH10428211317.06    1 AC016896, AC032024, AP001264
S/G/Y/R/B/O NT_008984AP000787932460413RH1166511319.17    1 AC016896, AP000750, AP000787, AP001801
S/G/Y/R/B/O NT_008984AP000787932461813RH1698311319.17    1 AC016896, AP000750, AP000787, AP001801
S/G/Y/R/B/O NT_008984AP000787932468773RH2549011318.96    1 AC016896, AP000750, AP000787, AP001801
S/G/Y/R/B/O NT_008984AP000787932475463RH6965511318.20    1 AC016896, AP000750, AP000787, AP001801
S/G/Y/R/B/O NT_008984AP000787932619053RH5194111318.09114119.0011417.501 AC016896, AP000750, AP000787, AP001801
S/G/Y/R/B/O NT_008984AP000787932619393RH1821811319.17    1 AC016896, AP000750, AP000787, AP001801


  NT_008984 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008984AP000787932793453RH1833411319.17    1 AC016896, AP000750, AP000787, AP001801
S/G/Y/R/B/O NT_008984AP000787932804763RH2747011319.17    1 AC016896, AP000787, AP001801
S/G/Y/R/B/O NT_008984AP000787932829083RH5216511319.17  11416.201 AP000750
S/G/Y/R/B/O NT_008984AP000787932829503RH4731811319.17    1 AC016896, AP000750, AP000787, AP001801
S/G/Y/R/B/O NT_008984AP000787932868113RH4898411319.17    1 AC016896
S/G/Y/R/B/O NT_008984AP000787932950893RH4620911318.30    1 AC016896, AP000750, AP000787, AP001801
S/G/Y/R/B/O NT_008984AP000787933102363RH6861611319.17    1 AC016896, AC021174, AP000750, AP000787, AP001801
S/G/Y/R/B/O NT_008984AP000787933206543RH6776011319.17    1 AC016896, AC021174, AP000750, AP000787
S/G/Y/R/B/O NT_008984AP000787933401173RH5180011317.37  11417.501 AC021174, AP000750, AP000787
S/G/Y/R/B/O NT_008984AP000787933982913AFMA275YF1    11416.201AP001876, AP001876
S/G/Y/R/B/O NT_008984AP001876934066023          
S/G/Y/R/B/O NT_008984AP000652935905303          
S/G/Y/R/B/O NT_008984AP001790937152583AFM303TF1    11416.201 AP001790
S/G/Y/R/B/O NT_008984AP000820937662543          
S/G/Y/R/B/O NT_008984AP001877938824903RH5211511319.17  11416.201 AP000771, AP001877
S/G/Y/R/B/O NT_008984AP001877938840533RH9324211319.17    1 AC073844, AP000771, AP001877
S/G/Y/R/B/O NT_008984AP001877938849533RH10370411319.17    1 AC073844, AP000771, AP001877
S/G/Y/R/B/O NT_008984AP001877939398133RH7486511318.92    1 AP000627, AP000730, AP000771, AP001877
S/G/Y/R/B/O NT_008984AP001877939400893RH3608511319.17    1 AP000627, AP000771, AP001877
S/G/Y/R/B/O NT_008984AP001877939447653RH2020  114177.00  1 AP000627, AP000730, AP000771, AP001877
S/G/Y/R/B/O NT_008984AP001877939449263RH5213211319.17  11416.201 AP000627, AP000730, AP000771, AP001877
S/G/Y/R/B/O NT_008984AP001877939458523RH3993011319.17    1 AP000627, AP000730, AP000771, AP001877
S/G/Y/R/B/O NT_008984AP001877939475963RH32352  114196.0011416.201 AP000627, AP000730, AP000771, AP001877
S/G/Y/R/B/O NT_008984AP001877939476093RH5188911319.17  11416.201 AP000627, AP000730, AP000771, AP001877
S/G/Y/R/B/O NT_008984AP001877939591593RH4556011319.17    1 AP000627, AP000730, AP000771, AP001877
S/G/Y/R/B/O NT_008984AP001877939908713RH6957011319.17    1AP000870, AP000627, AP000730, AP000771, AP000870, AP001877
S/G/Y/R/B/O NT_008984AP000870941367773WI-3485    11418.701 AP000865, AP000870
S/G/Y/R/B/O NT_008984AP000870941448083AFM238YH4    11418.701 AP000865
S/G/Y/R/B/O NT_008984AP000779941629513RH7978711356.32    1 AP000779, AP000865
S/G/Y/R/B/O NT_008984AP000779942444303RH10289411321.38    1 AP000779
S/G/Y/R/B/O NT_008984AP000779942846293RH2670611321.98    1 AP000612, AP000779
S/G/Y/R/B/O NT_008984AP000779942917253RH10401311322.53    1AP000848, AP000848
S/G/Y/R/B/O NT_008984AP000779943104323RH6552011322.53    1AP000848, AC011875, AP000612, AP000779, AP000848, AP001320
S/G/Y/R/B/O NT_008984AP000779943130383RH7864111322.31    1AP000848, AC011875, AP000612, AP000779, AP000848, AP001320
S/G/Y/R/B/O NT_008984AP000779943131033RH4756111322.53    1AP000848, AC011875, AP000612, AP000779, AP000848, AP001320
S/G/Y/R/B/O NT_008984AP000848943913953RH5223511322.47  11422.101 AC011875, AP000663, AP000848, AP001320
S/G/Y/R/B/O NT_008984AP000848944093493RH35278  114221.00  1 AC011875, AP000663, AP000848, AP001320
S/G/Y/R/B/O NT_008984AP000848944662453RH4005711326.69    1AP000929, AP000848, AP000929, AP001320
S/G/Y/R/B/O NT_008984AP000929944782663          
S/G/Y/R/B/O NT_008984AP003781946446193          
S/G/Y/R/B/O NT_008984 - RH10287411319.17    0  
S/G/Y/R/B/O NT_008984 - RH1184911319.17    0  
S/G/Y/R/B/O NT_008984 - RH3592311309.93    1AP000811, AP000811
S/G/Y/R/B/O NT_008984 - RH3996111309.93    1AP001102, AC024304, AC068186, AP001102
S/G/Y/R/B/O NT_008984 - RH4515711319.17    0  
S/G/Y/R/B/O NT_008984 - RH4890311313.19    0  
S/G/Y/R/B/O NT_008984 - RH8022911310.45    0  
S/G/Y/R/B/O NT_008984 - RH9207411324.13    0AP000929, AP003781, AC013596, AC018702, AP000929, AP003781
S/G/Y/R/B/O NT_008984 - RH9926811319.17    0AP000870, AP000865, AP000870