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  Chromosome 11 - RH Maps - Single Contig
 

Chromosome 11 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_009407 NT_009308 NT_008953 NT_008937 NT_024164 NT_033238 NT_009368 NT_028310
NT_033239 NT_009325 NT_008957 NT_024194 NT_033233 NT_033231 NT_028309 NT_030795
NT_017854 NT_009062 NT_024163 NT_024275 NT_009038 NT_009306 NT_009307 NT_030792
NT_030801 NT_024200 NT_024283 NT_033235 NT_009182 NT_033242 NT_008952 NT_024172
NT_033236 NT_024189 NT_009237 NT_024229 NT_009020 NT_024192 NT_033915 NT_009296
NT_009178 NT_008978 NT_024343 NT_027118 NT_027110 NT_030109 NT_024169 NT_033902
NT_033903 NT_033913 NT_033994 NT_033237 NT_009405 NT_033232 NT_024160 NT_030106
NT_033241 NT_033923 NT_033926 NT_033900 NT_033929 NT_033930 NT_033925 NT_033924
NT_033928 NT_024149 NT_033927 NT_033243 NT_033240 NT_008984 NT_009151 NT_033244
NT_033899 NT_030800 NT_033901


  NT_033902
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033902AC079103537567341          
S/G/Y/R/B/O NT_033902AC092707537636391          
S/G/Y/R/B/O NT_033902AP002418537975241          
S/G/Y/R/B/O NT_033902AP002512551976331CHLC.GATA63F09    11270.701AP001112, AP001112, AP002512
S/G/Y/R/B/O NT_033902AC021488539131431          
S/G/Y/R/B/O NT_033902AC011829540516641          
S/G/Y/R/B/O NT_033902AC009545540956081          
S/G/Y/R/B/O NT_033902AP000629541712453          
S/G/Y/R/B/O NT_033902AP001998542689013          
S/G/Y/R/B/O NT_033902AC027239543946963          
S/G/Y/R/B/O NT_033902AC036111545230433          
S/G/Y/R/B/O NT_033902AP003033546994063          
S/G/Y/R/B/O NT_033902AC068339547596033          
S/G/Y/R/B/O NT_033902AP003034549131423          
S/G/Y/R/B/O NT_033902AC022882550328232          
S/G/Y/R/B/O NT_033902AP003051552147681          
S/G/Y/R/B/O NT_033902AP001112552202271          
S/G/Y/R/B/O NT_033902AP002517552362003          
S/G/Y/R/B/O NT_033902AP004245554094513          
S/G/Y/R/B/O NT_033902AP001803554865063CHLC.GATA11A12.711    11268.801 AC021179, AC037472, AP001803
S/G/Y/R/B/O NT_033902AP001803556206183D11S1357    11277.501AP000479, AP000479
S/G/Y/R/B/O NT_033902AP001803556206183RH1369911212.96112380.00  1AP000479, AP000479
S/G/Y/R/B/O NT_033902AP000479556384123          
S/G/Y/R/B/O NT_033902AP002826556928043          
S/G/Y/R/B/O NT_033902AP001521557992393          
S/G/Y/R/B/O NT_033902AP001786559984413RH8668  112411.00  1 AP001786
S/G/Y/R/B/O NT_033902AP001786559984773RH2551711205.59    1 AP001786
S/G/Y/R/B/O NT_033902AP001786560004823RH2734711212.96    1 AP001786
S/G/Y/R/B/O NT_033902AP001786560007043RH7052811214.67    1 AP001786
S/G/Y/R/B/O NT_033902AP000781560259961          
S/G/Y/R/B/O NT_033902AC090319560644821RH5160911210.94  11263.701AP000781, AC090319, AP000781
S/G/Y/R/B/O NT_033902AC090319560907331RH5166111199.73  11280.101AP000781, AC090319, AP000781
S/G/Y/R/B/O NT_033902AC090319560907361RH5214311201.19112417.0011281.901AP000781, AP000781, AC090319, AP000781, AP000781
S/G/Y/R/B/O NT_033902AC090319560908041RH4716111200.40    1AP000781, AP000781, AC090319, AP000781, AP000781
S/G/Y/R/B/O NT_033902AC090319560909761RH2733311214.67    1AP000781, AC090319, AP000781
S/G/Y/R/B/O NT_033902AC090319560910361RH1774511214.67    1AP000781, AC090319, AP000781
S/G/Y/R/B/O NT_033902AC015685561366111RH10402811213.06    1AC090319, AP000781, AC015685, AC090319, AP000781
S/G/Y/R/B/O NT_033902AC015685561521111RH1702211214.67    1AC090319, AP000781, AC013606, AC015685, AC090319, AP000781, AP000862, M34462
S/G/Y/R/B/O NT_033902AC015685561521231RH7967  112423.00  1AC090319, AP000781, AC013606, AC015685, AC090319, AP000781, AP000862, M34462
S/G/Y/R/B/O NT_033902AC015685561627161AFMB017WA5    11274.201 AP000862
S/G/Y/R/B/O NT_033902AC015685561659841RH3631011210.94    1AC090319, AP000781, AC013606, AC015685, AC090319, AP000781, AP000862
S/G/Y/R/B/O NT_033902AC015685561717541RH5218711204.29  11275.601AC090319, AP000781, AC013606, AC015685, AC090319, AP000781
S/G/Y/R/B/O NT_033902AC015685561718021RH6724911214.67    1AC090319, AP000781, AC013606, AC015685, AC090319, AP000781
S/G/Y/R/B/O NT_033902AC015685561720101RH4719111206.02    1AC090319, AP000781, AC013606, AC015685, AC090319, AP000781
S/G/Y/R/B/O NT_033902AP002893562493503RH5187011206.02  11274.301AC015685, AC013606, AC015685, AC087505, AP001332, AP002893
S/G/Y/R/B/O NT_033902AP002893562493923RH1162111214.67    1AC015685, AC013606, AC015685, AC087505, AP001332, AP002893
S/G/Y/R/B/O NT_033902AP002893562497503RH5220711206.02  11274.301AC015685, AC013606, AC015685, AC087505, AP001332, AP002893
S/G/Y/R/B/O NT_033902AP002893562811653RH1643911213.06    1AC015685, AC026293, AC013606, AC015685, AC026293, AC087505, AP001332, AP002893
S/G/Y/R/B/O NT_033902AP002893562932723RH7043111209.49    1AC015685, AC026293, AC015685, AC026293, AC087505, AP001332, AP002893
S/G/Y/R/B/O NT_033902AP002893562933363RH4536211214.67    1AC015685, AC026293, AC015685, AC026293, AC087505, AP001332, AP002893


  NT_033902 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033902AP002893563143623RH6713711214.67    1AC026293, AC026293, AC087505, AP001332, AP002893
S/G/Y/R/B/O NT_033902AP002893563148593RH6571411212.96    1AC026293, AC026293, AC087505, AP001332, AP002893
S/G/Y/R/B/O NT_033902AP002893563164933RH1170511214.67    1AC026293, AC026293, AC087505, AP001332, AP002893
S/G/Y/R/B/O NT_033902AP002893563164953RH2851711212.96    1AC026293, AC026293, AC087505, AP001332, AP002893
S/G/Y/R/B/O NT_033902AP000662563779133RH4011611214.67    1AC009438, AC021522, AC026293, AC009438, AC021522, AC026293, AP000662, X54486
S/G/Y/R/B/O NT_033902AP000662563791473RH5161111202.85112423.0011277.501AC009438, AC021522, AC026293, AC009438, AC021522, AC026293, AP000662, X54486
S/G/Y/R/B/O NT_033902AP000662563791653RH2730011206.88    1AC009438, AC021522, AC026293, AC009438, AC021522, AC026293, AP000662, X54486
S/G/Y/R/B/O NT_033902AP000662563794893RH1145111214.67    1AC009438, AC021522, AC026293, AC009438, AC021522, AC026293, AP000662, X54486
S/G/Y/R/B/O NT_033902AP000662564099533RH1591511208.56    1AC009438, AC021522, AC026293, AC092707, AP000727, AC009438, AC021522, AC026293, AC092707, AP000662, AP000727
S/G/Y/R/B/O NT_033902AP000662564262453RH7070211214.67    1AC009438, AC021522, AC026293, AC092707, AP000727, AC009438, AC021522, AC026293, AC092707, AP000662, AP000727, AP001082
S/G/Y/R/B/O NT_033902AP000662564262753RH8012911210.94    1AC009438, AC021522, AC026293, AC092707, AP000727, AC009438, AC021522, AC026293, AC092707, AP000662, AP000727, AP001082
S/G/Y/R/B/O NT_033902AP000662564313403RH4550111211.14    1AC009438, AC021522, AC026293, AC092707, AP000727, AC009438, AC021522, AC026293, AC092707, AP000662, AP000727, AP001082
S/G/Y/R/B/O NT_033902AP000662564656843RH5194011214.88  11259.701AC009438, AC021522, AC090218, AC092707, AP000727, AP001931, AC009438, AC021522, AC090218, AC092707, AP000662, AP000727, AP001082, AP001931
S/G/Y/R/B/O NT_033902AP000662564656883RH2520311212.96    1AC009438, AC021522, AC090218, AC092707, AP000727, AP001931, AC009438, AC021522, AC090218, AC092707, AP000662, AP000727, AP001082, AP001931
S/G/Y/R/B/O NT_033902AP000662564657283RH2743611205.91    1AC009438, AC090218, AC092707, AP000727, AP001931, AC009438, AC090218, AC092707, AP000662, AP000727, AP001082, AP001931
S/G/Y/R/B/O NT_033902AP000662564691303RH8043011199.98    1AC009438, AC021522, AC090218, AC092707, AP000727, AP001931, AC009438, AC021522, AC090218, AC092707, AP000662, AP000727, AP001931
S/G/Y/R/B/O NT_033902AC021522565055171RH1824411212.96    1AC009438, AC090218, AC092707, AP000727, AP001931, AC009438, AC021522, AC090218, AC092707, AP000727, AP001082, AP001931
S/G/Y/R/B/O NT_033902AC021522565076931RH5236411203.09  11280.101AC009438, AC090218, AC092707, AP000727, AP001931, AC009438, AC021522, AC090218, AC092707, AP000727, AP001082, AP001931
S/G/Y/R/B/O NT_033902AC009438564865751          
S/G/Y/R/B/O NT_033902AP001931565145501          
S/G/Y/R/B/O NT_033902AC026293565217471          
S/G/Y/R/B/O NT_033902AP000727565748941          
S/G/Y/R/B/O NT_033902AC090218565969981RH3996811214.67    2AP000743, AP001260, AP001931, AC090218, AP000743, AP001260, AP001931
S/G/Y/R/B/O NT_033902AC090218565977691RH4745811208.56    2AP000743, AP001260, AP001931, AC090218, AP000743, AP001260, AP001931
S/G/Y/R/B/O NT_033902AC090218565995881RH6509111202.10    3AP000743, AP001260, AP001931, AC090218, AP000743, AP001260, AP001931
S/G/Y/R/B/O NT_033902 - RH10372811203.30    1AP001258, AP000406, AP000489, AP000574, AP001258
S/G/Y/R/B/O NT_033902 - RH4010111201.77    0  
S/G/Y/R/B/O NT_033902 - RH7484411198.22    1AP000442, AP000442
S/G/Y/R/B/O NT_033902 - RH7972111203.87    0  
S/G/Y/R/B/O NT_033902 - RH9306811203.30    1AP003557, AP001872, AP003557