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  Chromosome 11 - RH Maps - Single Contig
 

Chromosome 11 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_009407 NT_009308 NT_008953 NT_008937 NT_024164 NT_033238 NT_009368 NT_028310
NT_033239 NT_009325 NT_008957 NT_024194 NT_033233 NT_033231 NT_028309 NT_030795
NT_017854 NT_009062 NT_024163 NT_024275 NT_009038 NT_009306 NT_009307 NT_030792
NT_030801 NT_024200 NT_024283 NT_033235 NT_009182 NT_033242 NT_008952 NT_024172
NT_033236 NT_024189 NT_009237 NT_024229 NT_009020 NT_024192 NT_033915 NT_009296
NT_009178 NT_008978 NT_024343 NT_027118 NT_027110 NT_030109 NT_024169 NT_033902
NT_033903 NT_033913 NT_033994 NT_033237 NT_009405 NT_033232 NT_024160 NT_030106
NT_033241 NT_033923 NT_033926 NT_033900 NT_033929 NT_033930 NT_033925 NT_033924
NT_033928 NT_024149 NT_033927 NT_033243 NT_033240 NT_008984 NT_009151 NT_033244
NT_033899 NT_030800 NT_033901


  NT_009307
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009307AC107948171594232RH401001171.59    1AC020568, AC020568, AC107948
S/G/Y/R/B/O NT_009307AC107948171935652WI-4099    1160.201AC020568, AC068848, AC084117, AC020568, AC068848, AC084117, AC107948
S/G/Y/R/B/O NT_009307AC107948178619962RH74635  11805.00  1AC020568, AC020568, AC068848, AC090099, AC020568, AC020568, AC068848, AC090099, AC107948, J03474, L05921, X56652
S/G/Y/R/B/O NT_009307AC107948178646762RH682661171.39    1 X56652
S/G/Y/R/B/O NT_009307AC107948178790532RH399941171.59    1AC020568, AC068848, AC090099, AC020568, AC068848, AC090099, AC107948, L05920
S/G/Y/R/B/O NT_009307AC107948178791582RH400021171.39    1AC020568, AC068848, AC090099, AC020568, AC068848, AC090099, AC107948, L05920
S/G/Y/R/B/O NT_009307AC068848171538311          
S/G/Y/R/B/O NT_009307AC084117172031641RH14824  11800.00  1AC107948, AC084117, AC107948
S/G/Y/R/B/O NT_009307AC084117172464771RH273561165.07    1AC074292, AC074292, AC084117
S/G/Y/R/B/O NT_009307AC084117172470501RH658461163.37    1AC074292, AC074292, AC084117
S/G/Y/R/B/O NT_009307AC084117172878501RH273721165.45    1AC074292, AL157788, AC074292, AC084117, AL157788
S/G/Y/R/B/O NT_009307AC084117172878881RH8099  11800.00  1AC074292, AC074292, AC084117
S/G/Y/R/B/O NT_009307AC084117172885491RH930491171.39    1AC074292, AC074292, AC084117
S/G/Y/R/B/O NT_009307AC025620173103751RH273081171.39    1AC074292, AC025620, AC074292
S/G/Y/R/B/O NT_009307AC025620174082931RH400291171.39    1AC027544, AC025620, AC027544
S/G/Y/R/B/O NT_009307AC025620174099491RH8947  11800.00  1AC027544, AC025620, AC027544
S/G/Y/R/B/O NT_009307AC025620174100141RH369261168.15    1AC027544, AC025620, AC027544
S/G/Y/R/B/O NT_009307AC027544173294621RH400901170.18    1AC025620, AC074292, AC084117, AC025620, AC027544, AC074292, AC084117
S/G/Y/R/B/O NT_009307AC027544173298841RH987001171.39    1AC025620, AC074292, AC084117, AC025620, AC027544, AC074292, AC084117
S/G/Y/R/B/O NT_009307AC027544173472751RH33265  11800.00  2AC025620, AC074292, AC025620, AC027544, AC074292
S/G/Y/R/B/O NT_009307AC027544173473371RH473681169.29    2AC025620, AC074292, AC025620, AC027544, AC074292
S/G/Y/R/B/O NT_009307AC027544173601071RH274141171.49    1AC025620, AC074292, AC025620, AC027544, AC074292
S/G/Y/R/B/O NT_009307AC027544173684051RH38234  202293.00  2AL008725, AL008725
S/G/Y/R/B/O NT_009307AC027544173995691RH1044021164.32    1AC025620, AC025620, AC027544
S/G/Y/R/B/O NT_009307AC027544174841261RH941001167.00    2AC006430, AC016750, AC112694, AC006430, AC016750, AC027544, AC112694, AL354792
S/G/Y/R/B/O NT_009307AC112694175106022RH399651171.70    1AC016750, AC016750, AC112694
S/G/Y/R/B/O NT_009307AC112694177909052RH32394  11870.001160.301AC016750, AC103974, AC016750, AC103974, AC112694
S/G/Y/R/B/O NT_009307AC112694177910502RH254541167.00    1AC016750, AC103974, AC016750, AC103974, AC112694
S/G/Y/R/B/O NT_009307AC112694177911212RH119741169.29    1AC016750, AC103974, AC016750, AC103974, AC112694
S/G/Y/R/B/O NT_009307AC016750176114671RH399741171.39    1AC112694, AC016750, AC112694
S/G/Y/R/B/O NT_009307AC103974175213422          
S/G/Y/R/B/O NT_009307AC108007175702522          
S/G/Y/R/B/O NT_009307AC074292175827501RH33265  11800.00  2AC025620, AC027544, AC025620, AC027544, AC074292
S/G/Y/R/B/O NT_009307AC074292175830231RH473681169.29    2AC025620, AC027544, AC025620, AC027544, AC074292
S/G/Y/R/B/O NT_009307AC023078176986182WI-4698    1163.301 AC023078
S/G/Y/R/B/O NT_009307AC020568178875731          
S/G/Y/R/B/O NT_009307AC090099178877512          
S/G/Y/R/B/O NT_009307AC055860179951803RH273221171.39    1AC090099, AC108007, AC055860, AC090099, AC108007, X13895
S/G/Y/R/B/O NT_009307AC055860179981853RH714661167.00    1AC090099, AC108007, AC055860, AC090099, AC108007, X13895
S/G/Y/R/B/O NT_009307AC055860180269253RH521051165.07    1AC090099, AC108007, AC055860, AC090099, AC108007
S/G/Y/R/B/O NT_009307AC055860180269253SGC32688    1158.701AC090099, AC108007, AC055860, AC090099, AC108007
S/G/Y/R/B/O NT_009307AC005728180745263RH273751169.06    1AC055860, AC108007, AC005728, AC055860, AC068212, AC108007
S/G/Y/R/B/O NT_009307AC004582181918343RH152051163.37    1 AC068212
S/G/Y/R/B/O NT_009307AC004582181918343RH38548  11735.00  1 AC068212
S/G/Y/R/B/O NT_009307AC004582182655523RH1025831166.94    1 AC004582
S/G/Y/R/B/O NT_009307AC004736183219063RH461271171.39    1AC004582, AC004582, AC004736
S/G/Y/R/B/O NT_009307AC004736183219353RH278911168.77    1AC004582, AC004582, AC004736
S/G/Y/R/B/O NT_009307AC004736183324213RH274681164.81    1 AC004736
S/G/Y/R/B/O NT_009307AC004736183324263RH159551171.39    1 AC004736
S/G/Y/R/B/O NT_009307AC005151184372511          


  NT_009307 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009307AC005137184424883          
S/G/Y/R/B/O NT_009307AC003969186257003RH30441166.69    1 AC000406, AC003969
S/G/Y/R/B/O NT_009307AC003969186257003D11S902    1158.701 AC000406, AC003969
S/G/Y/R/B/O NT_009307AC003969186601293RH360021166.69    1 AC000406, AC003969
S/G/Y/R/B/O NT_009307AC003969186619583RH521461168.75  1161.801 AC000406, AC003969
S/G/Y/R/B/O NT_009307AC003969186619853RH274441168.57    1 AC000406, AC003969
S/G/Y/R/B/O NT_009307AC003969187058833RH807661167.21    1 AC000406, AC003969
S/G/Y/R/B/O NT_009307AC003969187065323RH419791169.16    1 AC000406, AC003969
S/G/Y/R/B/O NT_009307AC003969187165993RH14821  11707.00  1 AC003969
S/G/Y/R/B/O NT_009307AC003969187166753RH274291171.69    1 AC003969
S/G/Y/R/B/O NT_009307AC003969187167443RH251641166.26    1 AC000406, AC003969
S/G/Y/R/B/O NT_009307AC003692187429323RH400371171.49    2AC107956, AC003692, AC107956
S/G/Y/R/B/O NT_009307AC003692187491753RH363621164.86    2AC107956, AC003692, AC107956
S/G/Y/R/B/O NT_009307AC027026188734992          
S/G/Y/R/B/O NT_009307AC009652190177293RH517381173.59  1163.301AC027026, AC009652, AC027026
S/G/Y/R/B/O NT_009307AC009652190286303RH918521167.52    1 AC009652
S/G/Y/R/B/O NT_009307AC009652190287663RH706531173.64    1 AC009652
S/G/Y/R/B/O NT_009307AC009652190289683RH418361173.59    1 AC009652
S/G/Y/R/B/O NT_009307AC009652191059453CHLC.GATA73B08    1163.301 AC009652
S/G/Y/R/B/O NT_009307AC026947191533721          
S/G/Y/R/B/O NT_009307AC113193191644072          
S/G/Y/R/B/O NT_009307AC087616191979243RH701901173.64    1AC026947, AC026947, AC113193, AC026947, AC026947, AC079014, AC087616, AC113193
S/G/Y/R/B/O NT_009307AC087616193210933RH282751173.59    1AC023950, AC113193, AC023950, AC079014, AC087616, AC113193
S/G/Y/R/B/O NT_009307AC087616193574613RH361181175.58    1AC023950, AC023950, AC079014, AC087616
S/G/Y/R/B/O NT_009307AC023950194759053D11S1308    1163.301 AC023950
S/G/Y/R/B/O NT_009307AC023950194759053RH134851175.58    1 AC023950
S/G/Y/R/B/O NT_009307AC009549195584872RH1028041173.59    1 AC009549
S/G/Y/R/B/O NT_009307AC009549195589962RH125761167.52    1 AC009549, AC009665
S/G/Y/R/B/O NT_009307AC009549195594792RH522361167.5211861.001163.501 AC009549
S/G/Y/R/B/O NT_009307AC079361196834613RH158641175.58    1 AC079361
S/G/Y/R/B/O NT_009307AC079361196837773RH519301165.18  1164.601 AC079361, AC090662
S/G/Y/R/B/O NT_009307AC079361196839123RH274541173.59    1 AC079361, AC090662
S/G/Y/R/B/O NT_009307AC111163198038242          
S/G/Y/R/B/O NT_009307AC015684198904071RH1027631175.48    1AC011227, AC011227, AC015684
S/G/Y/R/B/O NT_009307AC015684198948281WI-3746    1163.301AC011227, AC011227, AC015684
S/G/Y/R/B/O NT_009307AC015684198968581RH455811167.52    1AC011227, AC011227, AC015684
S/G/Y/R/B/O NT_009307AC015684199647841RH32790  11911.00  1AC011227, AC011227, AC015684
S/G/Y/R/B/O NT_009307AC015684199648451RH915441167.52    1AC011227, AC011227, AC015684
S/G/Y/R/B/O NT_009307AC015684199661621RH400521175.58    1AC011227, AC011227, AC015684
S/G/Y/R/B/O NT_009307AC015684199679131RH658951173.59    1AC011227, AC011227, AC015684
S/G/Y/R/B/O NT_009307AC015684199819471RH38621  11945.00  1AC068860, AC068860
S/G/Y/R/B/O NT_009307AC015684199820011RH885  11903.00  1AC068860, AC015684, AC068860
S/G/Y/R/B/O NT_009307AC068860200784933RH31167  11889.00  1AC025972, AC025972, AC068860
S/G/Y/R/B/O NT_009307AC025972202107432RH522211167.52  1163.501 AC025972
S/G/Y/R/B/O NT_009307AC011227202410241          
S/G/Y/R/B/O NT_009307 - RH116241171.39    0AC020568, AC107948, AC020568, AC107948, X56652
S/G/Y/R/B/O NT_009307 - RH131871173.5911785.00  0  
S/G/Y/R/B/O NT_009307 - RH133751171.49    1AC024240, AC107956, AC024240, AC107956
S/G/Y/R/B/O NT_009307 - RH273711163.68    0  
S/G/Y/R/B/O NT_009307 - RH357651167.04    1AL139396, AL139396


  NT_009307 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009307 - RH400451171.39    0AC016750, AC112694, AC016750, AC112694
S/G/Y/R/B/O NT_009307 - RH470831168.96    1AC104016, AC104016
S/G/Y/R/B/O NT_009307 - RH517111168.98    1AC025623, AC103794, AC019298, AC025623, AC103794
S/G/Y/R/B/O NT_009307 - RH518131169.16    1AC025623, AC068405, AC103794, AC019298, AC025623, AC068405, AC103794
S/G/Y/R/B/O NT_009307 - RH519761169.16    1AC009869, AC079965, AC009869, AC079965
S/G/Y/R/B/O NT_009307 - RH521441165.7211800.00  0AC020568, AC107948, AC020568, AC107948, X56652
S/G/Y/R/B/O NT_009307 - RH522961165.72    0  
S/G/Y/R/B/O NT_009307 - RH523251169.06    1AC004796, AC006597, AC004796, AC006597
S/G/Y/R/B/O NT_009307 - RH664671167.00    0  
S/G/Y/R/B/O NT_009307 - RH677561168.96    1AC025623, AC068405, AC103794, AC019298, AC025623, AC068405, AC103794
S/G/Y/R/B/O NT_009307 - RH687141168.96    1AC025623, AC068405, AC103794, AC019298, AC025623, AC068405, AC103794
S/G/Y/R/B/O NT_009307 - RH750981169.16    0AC004582, AC004582, AC068212
S/G/Y/R/B/O NT_009307 - RH758131171.49    1AC026639, AC026639
S/G/Y/R/B/O NT_009307 - RH763901164.32    0  
S/G/Y/R/B/O NT_009307 - RH765021166.73    0AC016750, AC103974, AC112694, AC016750, AC103974, AC112694
S/G/Y/R/B/O NT_009307 - RH915901166.94    0  
S/G/Y/R/B/O NT_009307 - RH912561164.17    0  
S/G/Y/R/B/O NT_009307 - RH943151169.16    1AC009869, AC079965, AC009869, AC079965
S/G/Y/R/B/O NT_009307 - RH981641167.00    0