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  Chromosome 11 - RH Maps - Single Contig
 

Chromosome 11 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_009407 NT_009308 NT_008953 NT_008937 NT_024164 NT_033238 NT_009368 NT_028310
NT_033239 NT_009325 NT_008957 NT_024194 NT_033233 NT_033231 NT_028309 NT_030795
NT_017854 NT_009062 NT_024163 NT_024275 NT_009038 NT_009306 NT_009307 NT_030792
NT_030801 NT_024200 NT_024283 NT_033235 NT_009182 NT_033242 NT_008952 NT_024172
NT_033236 NT_024189 NT_009237 NT_024229 NT_009020 NT_024192 NT_033915 NT_009296
NT_009178 NT_008978 NT_024343 NT_027118 NT_027110 NT_030109 NT_024169 NT_033902
NT_033903 NT_033913 NT_033994 NT_033237 NT_009405 NT_033232 NT_024160 NT_030106
NT_033241 NT_033923 NT_033926 NT_033900 NT_033929 NT_033930 NT_033925 NT_033924
NT_033928 NT_024149 NT_033927 NT_033243 NT_033240 NT_008984 NT_009151 NT_033244
NT_033899 NT_030800 NT_033901


  NT_009325
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009325AC10438947189482RH418421136.42    1 More than 15
S/G/Y/R/B/O NT_009325AC10438947189752RH399841136.52    1 More than 15
S/G/Y/R/B/O NT_009325AC10438947200512RH696341136.52    2 More than 15
S/G/Y/R/B/O NT_009325AC10438947201702RH273961136.42    1 More than 15
S/G/Y/R/B/O NT_009325AC10438947230952RH273591136.62    1U01317, AC104389, NG_000007, U01317
S/G/Y/R/B/O NT_009325AC10438947261442RH714061136.42    1U01317, AF339401, AF339402, AF339403, AF339404, AF339405, AF339408, AF339409, AF339410, AF339411, AF339415, AF339417, NG_000007, U01317, V00505
S/G/Y/R/B/O NT_009325AC10438947274652RH696341136.52    2 More than 15
S/G/Y/R/B/O NT_009325AC10438947354022RH517651136.62  1142.101 More than 15
S/G/Y/R/B/O NT_009325U0131747380283RH523541136.42  1142.301AC104389, AC104389, NG_000007, U01317
S/G/Y/R/B/O NT_009325U0131747416153RH266311139.99    1AC104389, AC104389, M91036, M91037, NG_000007, U01317, V00517
S/G/Y/R/B/O NT_009325U0131747417653RH117851136.42    2AC104389, AC104389, AC104389, AC104389, M91036, M91036, M91037, M91037, NG_000007, NG_000007, U01317, U01317, V00517, V00517
S/G/Y/R/B/O NT_009325U0131747466813RH117851136.42    2AC104389, AC104389, AC104389, AC104389, M91036, M91036, M91037, M91037, NG_000007, NG_000007, U01317, U01317, V00517, V00517
S/G/Y/R/B/O NT_009325U0131747616483RH796661136.42    1AC104389, AC104389, NG_000007, U01317, V00508
S/G/Y/R/B/O NT_009325AF13739648563383RH522991136.52  1142.101AC026083, AC104389, AC026083, AC087380, AC104389
S/G/Y/R/B/O NT_009325AC01569150076622RH1811  11155.00  1AC011647, AC026083, AC011647, AC015691, AC026083, AC087380
S/G/Y/R/B/O NT_009325AC01569150076622RH8608  11143.00  1AC011647, AC026083, AC011647, AC015691, AC026083, AC087380
S/G/Y/R/B/O NT_009325AC01164750727541AFMB357YD1    1142.801 AC011647
S/G/Y/R/B/O NT_009325AC02608350669581          
S/G/Y/R/B/O NT_009325AC10934151076202RH677411136.52    1AC015691, AC026090, AC015691, AC026090, AC109341
S/G/Y/R/B/O NT_009325AC10934151493922RH714191136.42    1AC015691, AC026090, AC015691, AC026090, AC109341
S/G/Y/R/B/O NT_009325AC10934151574072RH32328  11172.00  1AC015691, AC026090, AC015691, AC026090, AC109341
S/G/Y/R/B/O NT_009325AC10934151574072SGC32233    1147.301AC015691, AC026090, AC015691, AC026090, AC109341
S/G/Y/R/B/O NT_009325AC10934151582202RH803651136.82    1AC015691, AC026090, AC015691, AC026090, AC109341
S/G/Y/R/B/O NT_009325AC10934154809092RH477451140.10    1AC026090, AC026090, AC109341
S/G/Y/R/B/O NT_009325AC11117751813022          
S/G/Y/R/B/O NT_009325AC00964253777741RH730  11185.00  1 AC009642
S/G/Y/R/B/O NT_009325AC01908852310241          
S/G/Y/R/B/O NT_009325AC02609054807451RH519161136.4211172.001142.901AC109341, AC109341
S/G/Y/R/B/O NT_009325AC02609054819101RH401221136.52    1 AC026090
S/G/Y/R/B/O NT_009325AC02276256455302RH171671136.62    1AC036216, AC021935, AC022762, AC036216
S/G/Y/R/B/O NT_009325AC02276256505682RH1037001136.42    1AC036216, AC021935, AC022762, AC036216
S/G/Y/R/B/O NT_009325AC02276256558752WI-3787    1143.701AC036216, AC021935, AC022762, AC036216
S/G/Y/R/B/O NT_009325AC02276256852392RH31202  11181.00  1 AC021935, AC022762
S/G/Y/R/B/O NT_009325AC03621657019101RH690021136.42    1AC068733, AC036216, AC068733, AF074029, D21219
S/G/Y/R/B/O NT_009325AC06873357488132RH803571138.75    1 AC024232, AC068733, AF408198
S/G/Y/R/B/O NT_009325AC06873357488262RH1036761136.42    1 AC024232, AC068733, AF408198
S/G/Y/R/B/O NT_009325AC06873357489252RH399241136.62    1 AC024232, AC068733, AF408198
S/G/Y/R/B/O NT_009325AC06873357646972RH928381136.32    1 AC024232, AC068733
S/G/Y/R/B/O NT_009325AC06873357744872RH920431136.42    1 AC024232, AC068733
S/G/Y/R/B/O NT_009325AC06873357751502WI-5200    1143.301 AC024232, AC068733
S/G/Y/R/B/O NT_009325AC08433758204332RH762471139.89    1AC068733, AC024232, AC068733, AC084337, M81780, X63600
S/G/Y/R/B/O NT_009325AC08433758245362RH273741136.32    1AC068733, AC024232, AC068733, AC084337, M81780
S/G/Y/R/B/O NT_009325AC08433758250262RH107561138.54    1AC068733, AC024232, AC068733, AC084337, AF029234
S/G/Y/R/B/O NT_009325AC08433758609242RH8599  11214.00  1AC068733, AC024232, AC068733, AC084337
S/G/Y/R/B/O NT_009325AC08433758609822RH117111136.62    1AC068733, AC068733, AC084337
S/G/Y/R/B/O NT_009325AC08433758784992RH521941141.33  1141.701AC068733, AC024232, AC068733, AC084337
S/G/Y/R/B/O NT_009325AC08433758785182RH473841136.42    1AC068733, AC024232, AC068733, AC084337
S/G/Y/R/B/O NT_009325AC08433758785182RH711411136.32    1AC068733, AC024232, AC068733, AC084337
S/G/Y/R/B/O NT_009325AC08433759000492RH911681136.32    1AC009796, AC009796, AC084337
S/G/Y/R/B/O NT_009325AC08433759000592RH274301136.42    1AC009796, AC009796, AC084337


  NT_009325 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009325AC08433759000652RH518691140.5111206.001143.701AC009796, AC009796, AC084337
S/G/Y/R/B/O NT_009325AC08433759045862RH522871136.32  1143.101AC009796, AC009796, AC084337
S/G/Y/R/B/O NT_009325AC08433759046192RH367711138.68    1AC009796, AC009796, AC084337
S/G/Y/R/B/O NT_009325AC08433759064072RH518521136.32  1143.501AC009796, AC009796, AC084337
S/G/Y/R/B/O NT_009325AC08433759064632RH116461136.32    1AC009796, AC009796, AC084337
S/G/Y/R/B/O NT_009325AC08433759127252RH796721138.34    1AC009796, AC009796, AC084337
S/G/Y/R/B/O NT_009325AC08433759127402RH1031701136.42    1AC009796, AC009796, AC084337
S/G/Y/R/B/O NT_009325AC08433759142782RH522171136.32  1143.301AC009796, AC009796, AC084337
S/G/Y/R/B/O NT_009325AC00979659786502RH516911140.51    1 AC009796
S/G/Y/R/B/O NT_009325AC00979659786502WI-11771    1143.901 AC009796
S/G/Y/R/B/O NT_009325AC00979659793442RH517011136.32  1143.301 AC009796
S/G/Y/R/B/O NT_009325AC00979660016582RH991241136.42    1 AC009796
S/G/Y/R/B/O NT_009325AC00979660183372RH523351136.42    1 AC009796
S/G/Y/R/B/O NT_009325AC00979660183372WI-17590    1145.801 AC009796
S/G/Y/R/B/O NT_009325AC00979660294542RH759831136.32    1 AC009796
S/G/Y/R/B/O NT_009325AC00979660298192RH519801141.12    1 AC009796
S/G/Y/R/B/O NT_009325AC00979660298192WI-15843    1138.201 AC009796
S/G/Y/R/B/O NT_009325AC00979660298392RH471971138.23    1 AC009796
S/G/Y/R/B/O NT_009325AC00979660298442RH262241136.32    1 AC009796
S/G/Y/R/B/O NT_009325AC00979660318292RH523361136.32  1143.101 AC009796
S/G/Y/R/B/O NT_009325AC00979660371732RH522651138.54  1142.201AC091564, AC091564
S/G/Y/R/B/O NT_009325AC00979660382212RH123751136.42    1AC027641, AC091564, AC009796, AC027641, AC091564, AF244139, AJ404847
S/G/Y/R/B/O NT_009325AC00979660404642RH107351136.62    1AC091564, AC091564
S/G/Y/R/B/O NT_009325AC00979660411872RH708921136.62    1AC027641, AC091564, AC009796, AC027641, AC091564, U25816
S/G/Y/R/B/O NT_009325AC00979660426552RH517501136.32  1142.501AC027641, AC091564, AC009796, AC027641, AC091564, AF039704, U25816
S/G/Y/R/B/O NT_009325AC00979660437192RH363251136.42    1AC027641, AC091564, AC009796, AC027641, AC091564, AF039704
S/G/Y/R/B/O NT_009325AC00979660513032RH942041136.42    1AC027641, AC091564, AC009796, AC027641, AC091564
S/G/Y/R/B/O NT_009325AC09156460917321RH521791138.54  1143.701AC027641, AC027641, AC091564
S/G/Y/R/B/O NT_009325AC09156461659011RH761081138.54    1AC027641, AC027641, AC091564
S/G/Y/R/B/O NT_009325AC09156461660931RH988811140.51    1AC027641, AC027641, AC091564
S/G/Y/R/B/O NT_009325AC09156461671261RH520801140.82  1143.701 AC091564
S/G/Y/R/B/O NT_009325AC09156461671481RH417971138.86    1AC027641, AC027641, AC091564
S/G/Y/R/B/O NT_009325AC09156461672801RH400761136.42    1AC027641, AC027641, AC091564
S/G/Y/R/B/O NT_009325AC09156461713871SGC30555    1142.901AC027641, AC027641, AC091564
S/G/Y/R/B/O NT_009325AC09156461713871RH521531146.44    1AC027641, AC027641, AC091564
S/G/Y/R/B/O NT_009325AC09156461912641WI-3891    1143.301 AC091564
S/G/Y/R/B/O NT_009325AC02764160858141          
S/G/Y/R/B/O NT_009325AC08728064158073RH655761136.42    1AC090160, AC017103, AC024729, AC087280, AC090160
S/G/Y/R/B/O NT_009325AC09016064436822RH988921136.32    1 AC024729, AC090160, Z68344
S/G/Y/R/B/O NT_009325AC10087565763392RH1043731141.43    1 AC100875
S/G/Y/R/B/O NT_009325AC02780467569602RH31248  11237.00  1AC024048, AC024048, AC027804
S/G/Y/R/B/O NT_009325AC06079967740353          
S/G/Y/R/B/O NT_009325AC10788469606732RH259231141.33    1 AC107884
S/G/Y/R/B/O NT_009325AC10788469620142RH120151140.51    1 AC107884
S/G/Y/R/B/O NT_009325AC10788469620462RH518331140.51  1143.701 AC107884
S/G/Y/R/B/O NT_009325AC10788470038582RH664841141.43    1 AC107884
S/G/Y/R/B/O NT_009325AC02404869438951          
S/G/Y/R/B/O NT_009325AC01222870838472RH454761140.51    1 AC012228
S/G/Y/R/B/O NT_009325AC01222871311382RH517741140.10  1141.501 AC012228
S/G/Y/R/B/O NT_009325AC01222871427492RH750791137.95    1 AC012228


  NT_009325 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009325AC01222871430072RH672731136.62    1 AC012228
S/G/Y/R/B/O NT_009325AC01222871446702RH159721136.62    1 AC012228
S/G/Y/R/B/O NT_009325 - RH167541139.89    0 AJ400879
S/G/Y/R/B/O NT_009325 - RH9065  11176.00  1AP000901, AC021777, AC021957, AP000901
S/G/Y/R/B/O NT_009325 - RH183311136.42    0  
S/G/Y/R/B/O NT_009325 - RH273781138.68    0AC015689, AC015689, AF391285
S/G/Y/R/B/O NT_009325 - RH365641136.42    1AC074005, AJ277662, AJ296302, AC074005, AJ277662, AJ296302
S/G/Y/R/B/O NT_009325 - RH401181136.62    0AC015689, AC015689, AF107045, AF391285
S/G/Y/R/B/O NT_009325 - RH448461141.22    0  
S/G/Y/R/B/O NT_009325 - RH458551140.10    0  
S/G/Y/R/B/O NT_009325 - RH521721141.33  1139.200AC009796, AC009796
S/G/Y/R/B/O NT_009325 - RH522891136.52  1139.600AC104389, U01317, AC104389, NG_000007, U01317, V00508
S/G/Y/R/B/O NT_009325 - RH678641136.62    0AC026090, AC109341, AC026090, AC109341