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  Chromosome 11 - RH Maps - Single Contig
 

Chromosome 11 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_009407 NT_009308 NT_008953 NT_008937 NT_024164 NT_033238 NT_009368 NT_028310
NT_033239 NT_009325 NT_008957 NT_024194 NT_033233 NT_033231 NT_028309 NT_030795
NT_017854 NT_009062 NT_024163 NT_024275 NT_009038 NT_009306 NT_009307 NT_030792
NT_030801 NT_024200 NT_024283 NT_033235 NT_009182 NT_033242 NT_008952 NT_024172
NT_033236 NT_024189 NT_009237 NT_024229 NT_009020 NT_024192 NT_033915 NT_009296
NT_009178 NT_008978 NT_024343 NT_027118 NT_027110 NT_030109 NT_024169 NT_033902
NT_033903 NT_033913 NT_033994 NT_033237 NT_009405 NT_033232 NT_024160 NT_030106
NT_033241 NT_033923 NT_033926 NT_033900 NT_033929 NT_033930 NT_033925 NT_033924
NT_033928 NT_024149 NT_033927 NT_033243 NT_033240 NT_008984 NT_009151 NT_033244
NT_033899 NT_030800 NT_033901


  NT_009237
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009237AC100773293417853RH1262411106.29    1 AC100773
S/G/Y/R/B/O NT_009237AC067990295293041          
S/G/Y/R/B/O NT_009237AC090833296504251RH301411110.30  11102.301 AC090833
S/G/Y/R/B/O NT_009237AC090833296504251RH654  111331.00  1 AC090833
S/G/Y/R/B/O NT_009237AC087655296037211          
S/G/Y/R/B/O NT_009237AC024728296090681          
S/G/Y/R/B/O NT_009237AC011669296688903          
S/G/Y/R/B/O NT_009237AC027465298556613RH5203411107.35  11102.201AC011669, AC024728, AC011669, AC024728, AC027465, AC110723
S/G/Y/R/B/O NT_009237AC090791298605303          
S/G/Y/R/B/O NT_009237AC110056299871943          
S/G/Y/R/B/O NT_009237AL356497300311543          
S/G/Y/R/B/O NT_009237AL359735300774983          
S/G/Y/R/B/O NT_009237AL353897301960203WI-10721    11109.001 AC044915, AC079916, AL353897
S/G/Y/R/B/O NT_009237AL353897302574263RH31170  111347.00  1 AC044915
S/G/Y/R/B/O NT_009237AL138813302607993          
S/G/Y/R/B/O NT_009237AC106852303374372          
S/G/Y/R/B/O NT_009237AL359980303678753          
S/G/Y/R/B/O NT_009237AL135933304510933          
S/G/Y/R/B/O NT_009237AC107973305621282          
S/G/Y/R/B/O NT_009237AC021233306780553RH31171  111372.00  1AC009543, AC009543, AC021233, AL137864
S/G/Y/R/B/O NT_009237AC009543307686101RH2074  111366.00  1AC012112, AC009543, AC012112, AL137864, AL356371
S/G/Y/R/B/O NT_009237AC009543307687311RH2732511114.71    1AC012112, AC009543, AC012112, AL137864, AL356371
S/G/Y/R/B/O NT_009237AC012112308311261          
S/G/Y/R/B/O NT_009237AC068749308450571          
S/G/Y/R/B/O NT_009237AC069194308451621          
S/G/Y/R/B/O NT_009237AL391623308499143          
S/G/Y/R/B/O NT_009237AL358944309945413RH5235811117.85111377.0011109.101AC068749, AC068749, AC087654, AL358944
S/G/Y/R/B/O NT_009237AL356860310131423          
S/G/Y/R/B/O NT_009237AL356440310986423RH5173711117.67  11109.101AC069194, AC069107, AC069194, AC090723, AL356440
S/G/Y/R/B/O NT_009237AL353699311267493          
S/G/Y/R/B/O NT_009237AL356240312248953          
S/G/Y/R/B/O NT_009237AL136088314147153RH31172  111403.00  1 AC016880
S/G/Y/R/B/O NT_009237AC026844314469743          
S/G/Y/R/B/O NT_009237AL122014314717543          
S/G/Y/R/B/O NT_009237AL133296315678203          
S/G/Y/R/B/O NT_009237AL135932316243533RH5204111120.20  11109.501 AC017086, AC020695, AL135932
S/G/Y/R/B/O NT_009237AL133349317381383          
S/G/Y/R/B/O NT_009237AL137160318032043          
S/G/Y/R/B/O NT_009237AL133376318615883          
S/G/Y/R/B/O NT_009237AL162614320421983RH32450  111470.0011109.401 AC022048, AC087825, AL162614
S/G/Y/R/B/O NT_009237AL162614320422753RH3991911120.20    1 AC022048, AC087825, AL162614
S/G/Y/R/B/O NT_009237AL137804321020933CHLC.GATA29B11    11106.901 AL137804
S/G/Y/R/B/O NT_009237AL137804321024673RH318311120.20  11109.501 AL137804
S/G/Y/R/B/O NT_009237AL137804321024673RH832  111450.00  1 AL137804
S/G/Y/R/B/O NT_009237AC108456321652852RH5171811115.99  11107.502AC018671, AC087372, AC018671, AC087372, AC108456, AL138811
S/G/Y/R/B/O NT_009237AC108456321754922RH9277111115.99    2AC018671, AC087372, AC093262, AC018671, AC087372, AC093262, AC108456
S/G/Y/R/B/O NT_009237AL133295322033593RH10420011115.34    2AC018671, AC087372, AC093262, AC108456, AC018671, AC087372, AC093262, AC108456, AL133295
S/G/Y/R/B/O NT_009237AL390768322883383          
S/G/Y/R/B/O NT_009237Z86001323456873          
S/G/Y/R/B/O NT_009237AL390767323827233          


  NT_009237 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009237AL049852323925803          
S/G/Y/R/B/O NT_009237Z83308324355113WI-3492    11107.501 AL136384, Z83308
S/G/Y/R/B/O NT_009237Z83308324389083AFM206XB2    11106.901 AL035586, AL136384, Z83308
S/G/Y/R/B/O NT_009237Z83309324406363          
S/G/Y/R/B/O NT_009237Z83306324709953          
S/G/Y/R/B/O NT_009237Z83001325104133          
S/G/Y/R/B/O NT_009237Z83307325438973RH5168611120.20  11108.901 AC016013, Z83307
S/G/Y/R/B/O NT_009237Z83307325440173RH3588011120.30    1 AC016013, Z83307
S/G/Y/R/B/O NT_009237Z83307325440173RH7616011117.67    1 AC016013, AC073080, Z83307
S/G/Y/R/B/O NT_009237Z83307325492193RH4606311115.88    1 AC016013, AC073080, Z83307
S/G/Y/R/B/O NT_009237Z83307325611373RH2733711115.99    1 AC016013, AC073080, Z83307
S/G/Y/R/B/O NT_009237Z95332325647043          
S/G/Y/R/B/O NT_009237AL049635325854743          
S/G/Y/R/B/O NT_009237AL138970326837873          
S/G/Y/R/B/O NT_009237AL035078327909913AFM324YH5    11105.401 AC027548
S/G/Y/R/B/O NT_009237AL035078327993093RH10202211120.50    1 AC027548, AL035078
S/G/Y/R/B/O NT_009237AL035078328260563RH9253711115.34    1 AC027548, AL035078
S/G/Y/R/B/O NT_009237AL078612328523553RH3998311120.30    1 AC027548, AL078612
S/G/Y/R/B/O NT_009237AL078612328538713RH9858411115.34    1 AC027548, AL078612
S/G/Y/R/B/O NT_009237AL078612328656963RH5204311122.81  11108.501 AC027548, AL078612
S/G/Y/R/B/O NT_009237AL078612328658343RH6495611116.10    1AL139274, AC027548, AL078612, AL139274, AL627107
S/G/Y/R/B/O NT_009237AL109624329294123          
S/G/Y/R/B/O NT_009237AL079340330085453          
S/G/Y/R/B/O NT_009237AL049692331484273RH1809711120.20    1 AL049692, AL138811
S/G/Y/R/B/O NT_009237AL049692331490043RH2737311114.29    1 AL049692, AL138811
S/G/Y/R/B/O NT_009237AL049692332001083RH1771011120.20    1 AL049692, AL138811, X69950
S/G/Y/R/B/O NT_009237AC087653332499301          
S/G/Y/R/B/O NT_009237AC023857332752721          
S/G/Y/R/B/O NT_009237AL078477333618413SGC31799    11109.501 AL078477
S/G/Y/R/B/O NT_009237AL096793334247503          
S/G/Y/R/B/O NT_009237AL049714334978483          
S/G/Y/R/B/O NT_009237AL035400336173543RH5170011117.88  11109.101 AL035400
S/G/Y/R/B/O NT_009237AL035400336589023RH7568411104.86    1 AL035400
S/G/Y/R/B/O NT_009237AL049713336926493RH5189211115.45    1AC107939, AC107939, AL049713, AL356577
S/G/Y/R/B/O NT_009237AL049713336926493WI-13781    1185.501AC107939, AC107939, AL049713, AL356577
S/G/Y/R/B/O NT_009237AL049713337395393RH1827911130.78    1AC107939, AC107939, AL049713
S/G/Y/R/B/O NT_009237AL049713337620083AFM198YB10    11111.001AC107939, AC107939
S/G/Y/R/B/O NT_009237AC107939337927743RH9909411124.22    1AL121926, AC107939, AL121926
S/G/Y/R/B/O NT_009237AC107939338165263RH2719311115.88    1AL121926, AC107939, AL121926
S/G/Y/R/B/O NT_009237AL121926338319633RH1782011125.99    1 AL121926
S/G/Y/R/B/O NT_009237AL121926338320713RH1275311125.99    1 AL121926
S/G/Y/R/B/O NT_009237AL121926338327913RH3662111125.99    1 AL121926
S/G/Y/R/B/O NT_009237AL121926338387863RH5232111123.95  11108.001 AL121926
S/G/Y/R/B/O NT_009237AL121926338440683RH5169511131.59  11107.001 AL121926
S/G/Y/R/B/O NT_009237AL121926338522083RH1748911124.00    1 AL121926
S/G/Y/R/B/O NT_009237AC087824338988602RH4002111125.92    1AL121926, AC023858, AC087824, AL121926, AL133518
S/G/Y/R/B/O NT_009237AC087824339010622RH4838211115.34    1AL121926, AC023858, AC087824, AL121926, AL133518
S/G/Y/R/B/O NT_009237AL136126340181313RH3998211125.99    1 AC022677, AC023858, AL136126
S/G/Y/R/B/O NT_009237AL122015341024193RH31173  111559.00  1 AC022677, AL122015
S/G/Y/R/B/O NT_009237AL122015341150253RH2740011125.92    1 AC022677, AL122015


  NT_009237 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009237AL122015341160713RH9896111125.99    1 AC022677, AL122015
S/G/Y/R/B/O NT_009237AL137161341849083RH2850311115.50    1 AL137161
S/G/Y/R/B/O NT_009237AL133399342018133          
S/G/Y/R/B/O NT_009237AL049575342822173          
S/G/Y/R/B/O NT_009237AL049629343804943WI-3431    11114.101 AL049629
S/G/Y/R/B/O NT_009237AL049629344289333RH1799411128.02    1 AL049629
S/G/Y/R/B/O NT_009237AL049629344290073RH5218411125.89111614.0011114.201 AL049629
S/G/Y/R/B/O NT_009237AL049629344304753RH7844311130.62    1 AL049629
S/G/Y/R/B/O NT_009237AL049629344333643RH2742311131.62    1AC015532, AC015532, AL049629
S/G/Y/R/B/O NT_009237AL049629344626153RH4003311128.12    1AC069193, AC113192, AC069193, AC113192, AL049629
S/G/Y/R/B/O NT_009237AL049629344647273RH5200111129.41111614.0011119.301AC069193, AC113192, AC069193, AC113192, AL049629
S/G/Y/R/B/O NT_009237AL049629344647803RH1828411130.62    1AC069193, AC113192, AC069193, AC113192, AL049629
S/G/Y/R/B/O NT_009237AL049629344649403RH4491311129.64    1AC069193, AC113192, AC069193, AC113192, AL049629
S/G/Y/R/B/O NT_009237AL049629344671673RH5181511129.64  11114.201AC069193, AC113192, AC069193, AC113192, AL049629
S/G/Y/R/B/O NT_009237AL049629344679223RH2092  111600.00  1AC113192, AC113192
S/G/Y/R/B/O NT_009237AL049629344682543RH13759  111622.00  1AC069193, AC113192, AC069193, AC113192, AL049629, M84349, Z14115
S/G/Y/R/B/O NT_009237AL049629344683143RH5173411128.02111622.0011114.301AC069193, AC113192, AC069193, AC113192, AL049629, M84349
S/G/Y/R/B/O NT_009237AL049629344685443RH3998911128.02    1AC069193, AC113192, AC069193, AC113192, AL049629, M84349, Z14115
S/G/Y/R/B/O NT_009237AL049629344695933RH2732311128.02    1AC069193, AC113192, AC069193, AC113192, AL049629, M84349, Z14115
S/G/Y/R/B/O NT_009237AL049629345004013RH5189311130.62  11106.401AC069193, AC113192, AC069193, AC113192, AL049629
S/G/Y/R/B/O NT_009237AL049629345005313RH2644011124.58    1AC069193, AC113192, AC069193, AC113192, AL049629
S/G/Y/R/B/O NT_009237AL049629345034653RH5223011130.62  11113.701AC069193, AC113192, AC069193, AC113192, AL049629
S/G/Y/R/B/O NT_009237AC069193345061501          
S/G/Y/R/B/O NT_009237AC113192345675402          
S/G/Y/R/B/O NT_009237AC087783345793421          
S/G/Y/R/B/O NT_009237AC011006345811111          
S/G/Y/R/B/O NT_009237AC087661345836231          
S/G/Y/R/B/O NT_009237AC107928346712882RH5230911131.70  11117.602AC011006, AC087661, AL138810, AC011006, AC087661, AC107928, AJ298105, AL138810, AL157891
S/G/Y/R/B/O NT_009237AC107928346871642RH9899111128.02    1AC011006, AC087661, AC011006, AC036227, AC087661, AC107928
S/G/Y/R/B/O NT_009237AC107928347302872RH31174  111658.00  1AC011006, AC011006, AC036227, AC107928
S/G/Y/R/B/O NT_009237AL359999347605433          
S/G/Y/R/B/O NT_009237AL157952348981373RH4810811128.02    1AC019083, AC087783, AC019083, AC087783, AL157952
S/G/Y/R/B/O NT_009237AL157952349008773RH4828511130.62    1AC019083, AC087783, AC019083, AC087783, AF190181, AL157952
S/G/Y/R/B/O NT_009237AL157952349152283RH1324411128.02111642.00  1AC019083, AC087783, AC019083, AC087783
S/G/Y/R/B/O NT_009237AL157952349426253CHLC.GATA6B09.948    11114.301AC019083, AC087783, AC019083, AC087783
S/G/Y/R/B/O NT_009237AC019083349754111          
S/G/Y/R/B/O NT_009237AL137224350008723          
S/G/Y/R/B/O NT_009237AL035079350893263RH5232011129.41  11119.301 AC090624, AL035079, AL035554
S/G/Y/R/B/O NT_009237AL035079350894693RH4011011128.12    1 AC090624, AL035079, AL035554
S/G/Y/R/B/O NT_009237AL035079350895353RH1845  111650.00  1 AC090624, AL035079, AL035554
S/G/Y/R/B/O NT_009237AL035079350929433RH3993811128.02    1 AC090624, AL035079, AL035554
S/G/Y/R/B/O NT_009237AL035079350971633RH7851511130.62    1 AC090624, AL035554
S/G/Y/R/B/O NT_009237AL035079351044853RH4598711131.62    1 AC090624, AL035079, AL035554
S/G/Y/R/B/O NT_009237AL139174352220943          
S/G/Y/R/B/O NT_009237AL133294352263053          
S/G/Y/R/B/O NT_009237AL049652354016252RH9282611128.02    1AC090469, AC087522, AC090469, AL049652
S/G/Y/R/B/O NT_009237AL049652354099242RH9389511129.64    1AC090469, AC087522, AC090469, AL049652
S/G/Y/R/B/O NT_009237AL049652354143192RH5203511130.98    1AC090469, AC087522, AC090469, AL049652
S/G/Y/R/B/O NT_009237AL049652354143192WI-15813    1193.801AC090469, AC087522, AC090469, AL049652
S/G/Y/R/B/O NT_009237AL049652354143612RH1171511130.62    1AC090469, AC087522, AC090469, AL049652


  NT_009237 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009237AL049652354591162RH5167211125.79  11114.201AC090469, AC090469, AL049652
S/G/Y/R/B/O NT_009237AL049652354593322RH9395611128.02    1 AL049652
S/G/Y/R/B/O NT_009237AL049652354608262RH1245211130.62    1AC090469, AC090469, AL049652
S/G/Y/R/B/O NT_009237AL049652354613482RH4007011128.02    1AC090469, AC090469, AL049652
S/G/Y/R/B/O NT_009237AC090469354823211RH9871511130.62    1 AC090469
S/G/Y/R/B/O NT_009237AC090469354913411RH8067611115.56    2AC068306, AC090156, AC068306, AC090156, AC090469
S/G/Y/R/B/O NT_009237AC090469356655831RH3998111130.32    1AC068306, AC090156, AC068306, AC090156, AC090469
S/G/Y/R/B/O NT_009237AC037464355090241          
S/G/Y/R/B/O NT_009237AL135799355720552RH5213411131.62  11118.001AC113192, AC113192, AL135799
S/G/Y/R/B/O NT_009237AL135799355721272RH5167611130.62  11106.501AC113192, AC113192, AL135799
S/G/Y/R/B/O NT_009237AL135799355739372RH2589411104.97    1AC113192, AC113192, AL135799
S/G/Y/R/B/O NT_009237AL135799355780842RH2732811131.02    1 AL135799
S/G/Y/R/B/O NT_009237AL135799355810382RH3994111128.12    1 AL135799
S/G/Y/R/B/O NT_009237AL135799355836112RH3995911130.62    1 AL135799
S/G/Y/R/B/O NT_009237AL135799355836982RH6758711128.02    1 AL135799
S/G/Y/R/B/O NT_009237AL135799355852472RH4649611124.11    1 AL135799
S/G/Y/R/B/O NT_009237AL135799355873152RH7042511128.02    1 AL135799
S/G/Y/R/B/O NT_009237AL135799356159932CHLC.GATA62H06    11114.301 AL135799
S/G/Y/R/B/O NT_009237AC090156357599821RH8067611115.56    2AC068306, AC090469, AC068306, AC090156, AC090469
S/G/Y/R/B/O NT_009237AC068306356444791          
S/G/Y/R/B/O NT_009237 - RH10210611129.41    0  
S/G/Y/R/B/O NT_009237 - RH2727211117.57    2AP000713, AP000714, AP000794, AP000831, AP000869, AP000713, AP000714, AP000794, AP000831, AP000869
S/G/Y/R/B/O NT_009237 - RH2730411113.45    0  
S/G/Y/R/B/O NT_009237 - RH3999011113.45    0AC068749, AL358944, AC068749, AC087654, AL358944
S/G/Y/R/B/O NT_009237 - RH4005111130.21    0  
S/G/Y/R/B/O NT_009237 - RH4506111130.62    0  
S/G/Y/R/B/O NT_009237 - RH5173211115.93  11112.901AC104978, AC104978
S/G/Y/R/B/O NT_009237 - RH5184011115.88  11113.001AC023206, AC023206
S/G/Y/R/B/O NT_009237 - RH6619411115.34    0  
S/G/Y/R/B/O NT_009237 - RH6634211115.34    0  
S/G/Y/R/B/O NT_009237 - RH6738511115.45    1AC023206, AC023206
S/G/Y/R/B/O NT_009237 - RH6803811115.13    1AC025231, AC087376, AC104978, AC025231, AC087376, AC104978
S/G/Y/R/B/O NT_009237 - RH7821611131.62    0AC069193, AC113192, AC069193, AC113192