Chromosome 11 - RH Maps - Single Contig

Chromosome 11 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_009407	NT_009308	NT_008953	NT_008937	NT_024164	NT_033238	NT_009368	NT_028310
NT_033239	NT_009325	NT_008957	NT_024194	NT_033233	NT_033231	NT_028309	NT_030795
NT_017854	NT_009062	NT_024163	NT_024275	NT_009038	NT_009306	NT_009307	NT_030792
NT_030801	NT_024200	NT_024283	NT_033235	NT_009182	NT_033242	NT_008952	NT_024172
NT_033236	NT_024189	NT_009237	NT_024229	NT_009020	NT_024192	NT_033915	NT_009296
NT_009178	NT_008978	NT_024343	NT_027118	NT_027110	NT_030109	NT_024169	NT_033902
NT_033903	NT_033913	NT_033994	NT_033237	NT_009405	NT_033232	NT_024160	NT_030106
NT_033241	NT_033923	NT_033926	NT_033900	NT_033929	NT_033930	NT_033925	NT_033924
NT_033928	NT_024149	NT_033927	NT_033243	NT_033240	NT_008984	NT_009151	NT_033244
NT_033899	NT_030800	NT_033901

NT_033900

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033900	AC019124	68438569	1	RH31184			11	2982.00			1	AP000808, AP003071,	AC019124, AP000808, AP003071
S/G/Y/R/B/O	NT_033900	AC019124	68651520	1	RH52377	11	259.92			11	359.10	1	AP003071, AP003779,	AC019124, AP003071, AP003779
S/G/Y/R/B/O	NT_033900	AC019124	68695087	1	RH103450	11	259.92					1	AP003071, AP003779,	AC019124, AP003071, AP003779
S/G/Y/R/B/O	NT_033900	AC019124	68695839	1	RH69373	11	261.73					1	AP003779,	AC019124, AP003779
S/G/Y/R/B/O	NT_033900	AP003071	67008934	1
S/G/Y/R/B/O	NT_033900	AP002992	67010986	1
S/G/Y/R/B/O	NT_033900	AP000808	67036811	1	RH65430	11	259.92					1		AP000808
S/G/Y/R/B/O	NT_033900	AP000808	68407491	1	WI-15192					11	364.10	2	AC019166, AP000444, AP003732,	AC019166, AP000444, AP000808, AP003732
S/G/Y/R/B/O	NT_033900	AP000808	68407491	1	RH52011	11	262.55					2	AC019166, AP000444, AP003732,	AC019166, AP000444, AP000808, AP003732
S/G/Y/R/B/O	NT_033900	AP000808	68414067	1	RH47914	11	259.82					2	AC019166, AP000444, AP003732,	AC019166, AP000444, AP000808, AP003732, L24544
S/G/Y/R/B/O	NT_033900	AP000808	68477831	1	RH7839			11	2978.00			1	AP000444,	AP000444, AP000808, L24544
S/G/Y/R/B/O	NT_033900	AP000808	68477885	1	RH27291	11	259.82					1	AP000444,	AP000444, L24544
S/G/Y/R/B/O	NT_033900	AP000808	68478273	1	RH39976	11	259.82					1		AP000808
S/G/Y/R/B/O	NT_033900	AP000808	68478462	1	RH52379	11	259.72	11	2994.00	11	362.40	1	AP000444,	AP000444, AP000808, L24544
S/G/Y/R/B/O	NT_033900	AP000808	68617391	1	WI-2875					11	351.80	1	AC019166, AP000444, AP003732,	AC019166, AP000444, AP000808, AP003732
S/G/Y/R/B/O	NT_033900	AP000668	67238406	1	RH77932	11	253.84					1	AP001184,	AP000668, AP001184
S/G/Y/R/B/O	NT_033900	AP000668	67238636	1	RH52140	11	256.28			11	344.60	1	AP001184,	AP000668, AP001184
S/G/Y/R/B/O	NT_033900	AP000668	67239168	1	RH51704	11	256.28			11	364.10	1	AP001184,	AP000668, AP001184
S/G/Y/R/B/O	NT_033900	AP000668	67239528	1	RH74797	11	252.97					1	AP001184,	AP000668, AP001184
S/G/Y/R/B/O	NT_033900	AP000668	67239532	1	RH47507	11	256.07					1	AP001184,	AP000668, AP001184
S/G/Y/R/B/O	NT_033900	AP001184	67065620	1	RH47100	11	258.21					1	AC021987, AP000668,	AC021987, AP000668, AP001184, M24485, U12472, U21689, X08058
S/G/Y/R/B/O	NT_033900	AP001184	67066604	1	RH7969			11	2955.00			1	AC021987, AP000668,	AC021987, AP000668, AP001184, M24485, U12472, U21689, X08058
S/G/Y/R/B/O	NT_033900	AP001184	67066770	1	RH27364	11	257.81					1	AC021987,	AC021987, AP001184, M24485, U21689, X08058
S/G/Y/R/B/O	NT_033900	AP001184	67088894	1	RH27413	11	259.92					1	AP003385,	AF053069, AP001184, AP003385
S/G/Y/R/B/O	NT_033900	AP001184	67092596	1	IB38					11	364.10	1	AP003385,	AF053069, AP001184, AP003385
S/G/Y/R/B/O	NT_033900	AP001184	67092596	1	RH52239	11	261.52					1	AP003385,	AF053069, AP001184, AP003385
S/G/Y/R/B/O	NT_033900	AP001184	67092671	1	RH51821	11	259.92			11	359.10	1	AP003385,	AF053069, AP001184, AP003385
S/G/Y/R/B/O	NT_033900	AP001184	67092676	1	RH11768	11	259.92					1	AP003385,	AF053069, AP001184, AP003385
S/G/Y/R/B/O	NT_033900	AP001184	67212189	1	RH51715	11	255.21	11	2975.00	11	342.30	1	AC021987,	AC021987, AP001184
S/G/Y/R/B/O	NT_033900	AC021987	67219478	1	RH47908	2	92.23					5	AC002992, AC005820, AC010896, AC093378, AP003385,	AC002992, AC005820, AC010896, AC021987, AC069046, AC079992, AC093378, AC099333, AF290421, AF290422, AF290423, AP003385
S/G/Y/R/B/O	NT_033900	AC021987	67227636	1	RH52372	11	256.69			11	364.10	1	AP000668, AP001184,	AC021987, AP000668, AP001184
S/G/Y/R/B/O	NT_033900	AP003385	67087684	1	RH40041	11	259.92					1	AC021987, AP001184,	AC021987, AF053069, AP001184, AP003385
S/G/Y/R/B/O	NT_033900	AP003385	67263880	1	RH47695	11	259.92					1	AC021987,	AC021987, AP003385
S/G/Y/R/B/O	NT_033900	AP003385	67267028	1	RH18048	11	259.92					1	AC021987,	AC021987, AP003385
S/G/Y/R/B/O	NT_033900	AP003716	67285344	3
S/G/Y/R/B/O	NT_033900	AC004924	67450532	3
S/G/Y/R/B/O	NT_033900	AC004923	67552715	3	RH75616	11	259.92					1	AC034259,	AC004923, AC034259
S/G/Y/R/B/O	NT_033900	AC004923	67556796	3	RH69713	11	259.82					1	AC034259, AP002807,	AC004923, AC034259, AF038406, AP002807
S/G/Y/R/B/O	NT_033900	AP002807	67578643	3	RH70640	11	261.24					1	AC034259,	AC034259, AF033033, AP002807
S/G/Y/R/B/O	NT_033900	AP002807	67581461	3	RH1714			11	2963.00			1	AC034259,	AC034259, AP002807
S/G/Y/R/B/O	NT_033900	AP002807	67581465	3	RH47025	11	259.82					1	AC034259,	AC034259, AP002807
S/G/Y/R/B/O	NT_033900	AP002807	67618484	3	RH51946	11	259.72			11	364.10	1	AP002992,	AP002807, AP002992
S/G/Y/R/B/O	NT_033900	AC034259	67620993	1
S/G/Y/R/B/O	NT_033900	AP002813	67683610	3	RH40000	11	259.92					1	AP002992,	AP002813, AP002992
S/G/Y/R/B/O	NT_033900	AP002813	67684628	3	RH94294	11	259.82					1	AP002992,	AP002813, AP002992
S/G/Y/R/B/O	NT_033900	AP002813	67694360	3	RH52136	11	259.82			11	362.40	1	AP002992,	AP002813, AP002992
S/G/Y/R/B/O	NT_033900	AP002813	67694398	3	RH16964	11	259.92					1	AP002992,	AP002813, AP002992
S/G/Y/R/B/O	NT_033900	AP002813	67694418	3	RH27428	11	257.60					1	AP002992,	AP002813, AP002992
S/G/Y/R/B/O	NT_033900	AP002813	67704073	3	RH52190	11	259.82	11	2979.00	11	360.90	1	AP002992,	AC024127, AP002813, AP002992
S/G/Y/R/B/O	NT_033900	AP002813	67717029	3	RH17770	11	261.24					1	AP002992,	AC024127, AP002813, AP002992

NT_033900 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033900	AP002813	67717162	3	RH67150	11	261.24					1	AP002992,	AC024127, AP002813, AP002992
S/G/Y/R/B/O	NT_033900	AP002813	67789961	3	RH51957	11	259.72			11	362.40	1	AP002992,	AC024127, AC051652, AP002813, AP002992
S/G/Y/R/B/O	NT_033900	AP002813	67790053	3	RH45838	11	259.82					1	AP002992,	AC024127, AC051652, AP002813, AP002992
S/G/Y/R/B/O	NT_033900	AP002813	67797747	3	RH17410	11	262.04					1		AC024127, AC051652, AP002366, AP002813
S/G/Y/R/B/O	NT_033900	AF283320	67893901	3	RH42468	11	259.92			11	364.10	1		AC024123, AC024126, AC051652, AF283320
S/G/Y/R/B/O	NT_033900	AP000807	67949555	1	RH46314	11	259.82					1	AP001075,	AP000807, AP001075
S/G/Y/R/B/O	NT_033900	AP001075	67938938	1
S/G/Y/R/B/O	NT_033900	AF283321	67995543	3	RH11806	11	259.92					1	AP000807, AP001075,	AC024123, AF283321, AP000807, AP001075, AP002366
S/G/Y/R/B/O	NT_033900	AP001788	68073864	3	RH28286	11	259.72					1	AP001075,	AP001075, AP001788
S/G/Y/R/B/O	NT_033900	AP001788	68094910	3	RH76500	11	260.02					1		AP001788
S/G/Y/R/B/O	NT_033900	AP001788	68151579	3	RH94210	11	259.82					1		AP001788
S/G/Y/R/B/O	NT_033900	AP001788	68153630	3	RH25907	11	262.76					1	AP003096,	AP001788, AP003096
S/G/Y/R/B/O	NT_033900	AP001788	68229563	3	RH75769	11	262.76					1	AP003096,	AP001788, AP003096
S/G/Y/R/B/O	NT_033900	AP003096	68246285	3	RH102068	11	259.72					1		AP003096
S/G/Y/R/B/O	NT_033900	AP003096	68293253	3	RH52262	11	259.02			11	362.40	1	AP003732,	AP003096, AP003732
S/G/Y/R/B/O	NT_033900	AP003096	68293559	3	RH51714	11	259.82	11	2979.00	11	362.40	1	AP003732,	AP003096, AP003732
S/G/Y/R/B/O	NT_033900	AC019166	68297175	1
S/G/Y/R/B/O	NT_033900	AP003732	68297243	1
S/G/Y/R/B/O	NT_033900	AP000444	68468332	1	WI-15192					11	364.10	2	AC019166, AP000808, AP003732,	AC019166, AP000444, AP000808, AP003732
S/G/Y/R/B/O	NT_033900	AP000444	68468332	1	RH52011	11	262.55					2	AC019166, AP000808, AP003732,	AC019166, AP000444, AP000808, AP003732
S/G/Y/R/B/O	NT_033900	AP000444	68474913	1	RH47914	11	259.82					2	AC019166, AP000808, AP003732,	AC019166, AP000444, AP000808, AP003732, L24544
S/G/Y/R/B/O	NT_033900	AP003779	68501404	1
S/G/Y/R/B/O	NT_033900		-		RH102881	11	261.24					0
S/G/Y/R/B/O	NT_033900		-		RH102931	11	253.19					0		AC019220, AP000481, AP002748
S/G/Y/R/B/O	NT_033900		-		RH12099	11	253.30					0		AP001885, AP002776
S/G/Y/R/B/O	NT_033900		-		RH16602	11	259.82					0	AP000487,	AP000487, AP001787
S/G/Y/R/B/O	NT_033900		-		RH18107	11	261.24					0		AJ006693, AP000867
S/G/Y/R/B/O	NT_033900		-		RH18199	11	253.30					0		AP001885, AP002776
S/G/Y/R/B/O	NT_033900		-		RH26230	11	255.53					0		AC005849, AP002437, AP003419
S/G/Y/R/B/O	NT_033900		-		RH26701	11	256.07					1	AP000593,	AP000593
S/G/Y/R/B/O	NT_033900		-		RH26784	11	255.21					0		AP001885, AP002776
S/G/Y/R/B/O	NT_033900		-		RH27191	11	253.19					0		AC019220, AP000481, AP000671, AP001100, AP001157, AP001385
S/G/Y/R/B/O	NT_033900		-		RH27282	11	253.30					0		AC005849, AP002437, AP003419
S/G/Y/R/B/O	NT_033900		-		RH27294	11	256.07					1	AP000593,	AP000593
S/G/Y/R/B/O	NT_033900		-		RH27349	11	254.38					0
S/G/Y/R/B/O	NT_033900		-		RH27382	11	259.82					0		AJ006693, AP000867
S/G/Y/R/B/O	NT_033900		-		RH27389	11	255.24					1	AP000719,	AF110460, AF110798, AP000719
S/G/Y/R/B/O	NT_033900		-		RH35948	11	254.49					0
S/G/Y/R/B/O	NT_033900		-		RH36629	11	259.82					0		AP003967
S/G/Y/R/B/O	NT_033900		-		RH39950	11	254.49					0
S/G/Y/R/B/O	NT_033900		-		RH39964	11	259.82					0	AP002992,	AP002992
S/G/Y/R/B/O	NT_033900		-		RH40042	11	255.53					0		AP000729, AP001261
S/G/Y/R/B/O	NT_033900		-		RH40049	11	261.24					0
S/G/Y/R/B/O	NT_033900		-		RH40065	11	259.82					0	AP000807, AP001075,	AP000807, AP001075
S/G/Y/R/B/O	NT_033900		-		RH41858	11	255.35					0		AC005849, AP003419
S/G/Y/R/B/O	NT_033900		-		RH41895	11	255.64					0		AC005849, AP002437, AP003419, X97267
S/G/Y/R/B/O	NT_033900		-		RH44634	11	253.30					0		AP000729, AP000729, AP001261
S/G/Y/R/B/O	NT_033900		-		RH45249	11	254.60					0		AC005849, AP002437, AP003419
S/G/Y/R/B/O	NT_033900		-		RH45250	11	260.22					0	AP002336,	AP001787, AP002336
S/G/Y/R/B/O	NT_033900		-		RH45377	11	254.49					0		AP001885, AP002776

NT_033900 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033900	-	RH46345	11	253.23					0		AP000485, AP002387
S/G/Y/R/B/O	NT_033900	-	RH46970	11	258.10					0	AP000807, AP001075,	AP000807, AP001075
S/G/Y/R/B/O	NT_033900	-	RH47022	11	253.19					0		AC019220, AP000481, AP000671, AP001100, AP001157, AP001385
S/G/Y/R/B/O	NT_033900	-	RH47283	11	253.34					0		AC019220, AF132894, AP000481, AP001100, AP002748
S/G/Y/R/B/O	NT_033900	-	RH47759	11	255.53					0		AP001261
S/G/Y/R/B/O	NT_033900	-	RH48629	11	261.24					0		AP003967
S/G/Y/R/B/O	NT_033900	-	RH51831	11	255.53			11	342.40	0		AP001885, U08438
S/G/Y/R/B/O	NT_033900	-	RH52010	11	259.72			11	342.50	0		AP002387, AP002771
S/G/Y/R/B/O	NT_033900	-	RH52019	11	259.82			11	356.80	0		AF110060, AP002387
S/G/Y/R/B/O	NT_033900	-	GCT16B07					11	356.90	0		AC013730, AP002771, AP004370
S/G/Y/R/B/O	NT_033900	-	WI-7587					11	358.40	0		AJ006693, AP000867
S/G/Y/R/B/O	NT_033900	-	WI-17480					11	358.40	1	AP003965,	AP003965
S/G/Y/R/B/O	NT_033900	-	RH52030	11	254.89	11	2917.00	11	360.90	0		AP000485, AP001319, AP002387
S/G/Y/R/B/O	NT_033900	-	RH52060	11	253.19	11	2908.00			0		AC019220, AP000481, AP000671, AP001100, AP001157, AP001385
S/G/Y/R/B/O	NT_033900	-	RH52066	11	253.84			11	362.40	1	AP000487,	AP000405, AP000487
S/G/Y/R/B/O	NT_033900	-	RH52163	11	253.30					0		AC019220, AP000481, AP002748
S/G/Y/R/B/O	NT_033900	-	RH52234	11	254.89					0		AP000729
S/G/Y/R/B/O	NT_033900	-	RH52276	11	255.53			11	362.40	0		AP001885, AP002776
S/G/Y/R/B/O	NT_033900	-	RH52304	11	255.21					0		AC005849, AP002437, AP003419
S/G/Y/R/B/O	NT_033900	-	RH65398	11	255.53					0		AP001885
S/G/Y/R/B/O	NT_033900	-	RH67315	11	255.53					0		AC019220, AP000671, AP001100, AP001157, AP001319, AP001385
S/G/Y/R/B/O	NT_033900	-	RH68115	11	253.30					0		AC005849, AF176912, AP003419
S/G/Y/R/B/O	NT_033900	-	RH71154	11	259.92					0		AP000867, AP002387
S/G/Y/R/B/O	NT_033900	-	RH74884	11	257.71					0		AC005849, AP002437, X97267
S/G/Y/R/B/O	NT_033900	-	RH74963	11	253.30					0		AP001885, AP002776
S/G/Y/R/B/O	NT_033900	-	RH75354	11	253.01					0		AC019220, AF132894, AP000481, AP001100, AP002748
S/G/Y/R/B/O	NT_033900	-	RH75682	11	256.79					0		More than 15
S/G/Y/R/B/O	NT_033900	-	RH75726	11	257.91					0	AC019124, AP000808, AP003071,	AC019124, AP000808, AP003071
S/G/Y/R/B/O	NT_033900	-	RH76718	11	253.73					0		AP000729, AP001261
S/G/Y/R/B/O	NT_033900	-	RH78502	11	254.49					0		AC005849, AP002437, AP003419
S/G/Y/R/B/O	NT_033900	-	RH78667	11	254.49					0		AC005849
S/G/Y/R/B/O	NT_033900	-	RH80355	11	253.34					0	AC004923, AC011744, AC067827, AC073507, AC073648, AC079804, AC097493, AC108724, AP003385,	AC004923, AC011744, AC012661, AC067827, AC073507, AC073648, AC079804, AC097493, AC108724, AL592170, AP003385
S/G/Y/R/B/O	NT_033900	-	RH80362	11	253.23					0	AP000808, AP003071,	AP000808, AP003071
S/G/Y/R/B/O	NT_033900	-	RH92701	11	255.32					0		AP000485
S/G/Y/R/B/O	NT_033900	-	RH94186	11	259.82					0
S/G/Y/R/B/O	NT_033900	-	RH94200	11	259.92					0	AP002992,	AP002992
S/G/Y/R/B/O	NT_033900	-	RH98812	11	254.89					0		AP000485, AP003176
S/G/Y/R/B/O	NT_033900	-	RH98933	11	255.32					0
S/G/Y/R/B/O	NT_033900	-	RH32934			11	2899.00			0		AC019220, AP000481, AP000671, AP001100, AP001157, AP001385
S/G/Y/R/B/O	NT_033900	-	WI-16597					11	362.40	0		AP002387, AP002771
S/G/Y/R/B/O	NT_033900	-	WI-4232					11	362.40	0		AC097722
S/G/Y/R/B/O	NT_033900	-	NIB1242					11	364.10	0		AC026173, AC055829, AP005019