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  Chromosome 4 - RH Maps - Single Contig
 

Chromosome 4 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_026996 NT_006111 NT_022865 NT_006081 NT_033075 NT_029956 NT_006051 NT_033060
NT_033064 NT_006362 NT_006307 NT_006342 NT_029958 NT_016407 NT_033056 NT_030649
NT_006344 NT_023072 NT_033076 NT_006350 NT_006285 NT_006316 NT_023052 NT_006189
NT_022794 NT_006305 NT_022751 NT_022995 NT_033067 NT_006098 NT_029274 NT_033069
NT_016297 NT_022782 NT_033059 NT_006238 NT_022831 NT_022853 NT_022850 NT_022778
NT_022852 NT_033063 NT_022813 NT_022836 NT_022862 NT_006303 NT_030640 NT_033073
NT_006281 NT_006216 NT_033072 NT_022760 NT_006109 NT_006328 NT_022844 NT_030642
NT_006114 NT_030659 NT_006204 NT_033074 NT_023068 NT_006201 NT_006383 NT_006397
NT_033061 NT_033068 NT_006365 NT_028147 NT_028173 NT_006371 NT_025694 NT_031780
NT_016599 NT_031781 NT_016354 NT_033055 NT_033062 NT_033065 NT_006167 NT_006302
NT_022755 NT_022753 NT_022803 NT_022846 NT_022856 NT_022805 NT_022819 NT_022845
NT_006124 NT_022811 NT_006127 NT_006258 NT_016606 NT_029950 NT_028160 NT_029954
NT_022851 NT_022832 NT_015169 NT_006129 NT_022740 NT_029955 NT_022801 NT_022824
NT_006171 NT_022776 NT_022768 NT_006198 NT_006257 NT_022775 NT_006118 NT_022792
NT_006256 NT_006169 NT_022841 NT_033070 NT_022800 NT_033066 NT_033071 NT_028146
NT_029961 NT_025688


  NT_006051
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006051AC11656240083011          
S/G/Y/R/B/O NT_006051AC09749340104543          
S/G/Y/R/B/O NT_006051AC07350741740931          
S/G/Y/R/B/O NT_006051AC09657241900101          
S/G/Y/R/B/O NT_006051AC02277042691171          
S/G/Y/R/B/O NT_006051AC10851942744151          
S/G/Y/R/B/O NT_006051AC07364844223403          
S/G/Y/R/B/O NT_006051AC01174447265873RH46905434.92    1AC015709, AC105415, AC011744, AC015709, AC105415, AF276255
S/G/Y/R/B/O NT_006051AC10541547737613RH59473434.924242.00424.801AC015709, AC015709, AC105415, AF276255
S/G/Y/R/B/O NT_006051AC10541547802793RH92400434.92    1AC015709, AC110814, AC015709, AC105415, AC110812, AC110814, AF276255
S/G/Y/R/B/O NT_006051AC01570948080061          
S/G/Y/R/B/O NT_006051AC11081448844111RH59612434.92  426.601 AC110814, M98528
S/G/Y/R/B/O NT_006051AC11081448852651RH69826432.70    1 AC110814, M98528
S/G/Y/R/B/O NT_006051AC11081448856421RH67954432.49    1 AC110814, M98528
S/G/Y/R/B/O NT_006051AC11081448857831RH59270436.434251.00426.601 AC110814, M98528
S/G/Y/R/B/O NT_006051AC11081448858701RH41276434.72    1 AC110814, M98528
S/G/Y/R/B/O NT_006051AC11081448862351RH59326434.72  427.701 AC110814
S/G/Y/R/B/O NT_006051AC11081448862541RH26124434.72    1 AC110814
S/G/Y/R/B/O NT_006051AC11081448864721RH59532434.72  427.201 AC110814
S/G/Y/R/B/O NT_006051AC00733249284301          
S/G/Y/R/B/O NT_006051AC11477549337931          
S/G/Y/R/B/O NT_006051AC01372550130783RH12862432.49    1AC110814, AC013725, AC110814
S/G/Y/R/B/O NT_006051AC01372550585873RH67069437.26    1 AC013725
S/G/Y/R/B/O NT_006051AC01372550601293RH59050434.92  424.801 AC013725
S/G/Y/R/B/O NT_006051AC10935951455701RH78283434.72    1AC041016, AC114775, AC025073, AC041016, AC109359, AC114775
S/G/Y/R/B/O NT_006051AC10935951475511AFMA348XA5    427.901AC041016, AC114775, AC025073, AC041016, AC109359, AC114775
S/G/Y/R/B/O NT_006051AC04101651638741          
S/G/Y/R/B/O NT_006051AC11475453314761RH2098  4334.00  1AC007332, AC092437, AC007332, AC092437, AC114754, AF426432, M76732
S/G/Y/R/B/O NT_006051AC11475453315151RH16445434.92    1AC007332, AC092437, AC007332, AC092437, AC114754, AF426432, M76732
S/G/Y/R/B/O NT_006051AC09243753597763RH58920434.82  424.702AC007332, AC092434, AC007332, AC092434, AC092437
S/G/Y/R/B/O NT_006051AC10813954392551CHLC.GATA42E03    430.302AC092434, AC092434, AC108139
S/G/Y/R/B/O NT_006051AC10813954829331RH32793  4322.00  1 AC108139
S/G/Y/R/B/O NT_006051AC10813955063341RH103916434.72    2AC092434, AC092434, AC108139
S/G/Y/R/B/O NT_006051AC10739556198431          
S/G/Y/R/B/O NT_006051AC09266557170653          
S/G/Y/R/B/O NT_006051AC00466459690293RH102777438.99    1AC114738, AC004661, AC004664, AC114738
S/G/Y/R/B/O NT_006051AC00466459851623RH1916  4407.00  1AC114738, AC004664, AC114738
S/G/Y/R/B/O NT_006051AC00466459957373RH68303438.67    1AC114738, AC004661, AC004664, AC114738
S/G/Y/R/B/O NT_006051AC00813060256661          
S/G/Y/R/B/O NT_006051AC11473860259521          
S/G/Y/R/B/O NT_006051AC09738260755233WI-3371    445.101 AC004394, AC004579, AC004580, AC097382, AC112710
S/G/Y/R/B/O NT_006051AC09738261670113RH93787450.48    1 AC004394, AC004579, AC004580, AC097382
S/G/Y/R/B/O NT_006051AC09738261672483RH103330449.47    1 AC004394, AC004579, AC097382
S/G/Y/R/B/O NT_006051AC09738261952773RH59481450.484526.00  1 AC004580, AC097382
S/G/Y/R/B/O NT_006051AC09738261952773WI-15887    444.801 AC004580, AC097382
S/G/Y/R/B/O NT_006051AC09738262037903RH78268450.48    1 AC004394, AC097382
S/G/Y/R/B/O NT_006051AC09738262040313RH41355450.59    1 AC004394, AC097382
S/G/Y/R/B/O NT_006051AC09738262044363RH59410449.37    1 AC004394, AC004524, AC097382
S/G/Y/R/B/O NT_006051AC09738262044363WI-11590    444.901 AC004394, AC004524, AC097382
S/G/Y/R/B/O NT_006051AC09738262045483RH48938449.56    1 AC004394, AC097382


  NT_006051 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006051AC09738262051363RH59105449.474492.00  1 AC004524, AC097382
S/G/Y/R/B/O NT_006051AC09738262051363WI-18100    447.401 AC004524, AC097382
S/G/Y/R/B/O NT_006051AC09738262057553RH59426449.56    1 AC097382
S/G/Y/R/B/O NT_006051AC09738262057553WI-13782    447.301 AC097382
S/G/Y/R/B/O NT_006051AC09738262059033RH25737450.52    1 AC097382
S/G/Y/R/B/O NT_006051AC09738262059453RH59242450.52    1 AC097382
S/G/Y/R/B/O NT_006051AC09738262059453WI-18530    444.301 AC097382
S/G/Y/R/B/O NT_006051AC09738262083453RH47508449.47    1 AC004394, AC004524, AC097382
S/G/Y/R/B/O NT_006051AC09246362317221RH59638448.06    1AC097382, AC004394, AC004524, AC004555, AC092463, AC097382
S/G/Y/R/B/O NT_006051AC09246362317221NIB923    440.301AC097382, AC004394, AC004524, AC004555, AC092463, AC097382
S/G/Y/R/B/O NT_006051AC09246362318291RH41275447.96    1AC097382, AC004394, AC004524, AC004555, AC092463, AC097382
S/G/Y/R/B/O NT_006051AC09246362326431RH48438447.96    1AC097382, AC004394, AC004524, AC004555, AC092463, AC097382
S/G/Y/R/B/O NT_006051AC09246362332511RH8358  4473.00  1AC097382, AC004394, AC004524, AC004555, AC092463, AC097382
S/G/Y/R/B/O NT_006051AC09246362786291RH91338447.86    1 AC004555, AC092463
S/G/Y/R/B/O NT_006051AC09246362793881RH12363447.86    1 AC004555, AC092463
S/G/Y/R/B/O NT_006051AC09246362806421RH270177646.23    1 AC004555, AC092463
S/G/Y/R/B/O NT_006051AC09246362806521RH74597  4473.00  1 AC004555, AC092463
S/G/Y/R/B/O NT_006051AC09246363590871RH80669447.86    1 AC004524, AC004555, AC092463
S/G/Y/R/B/O NT_006051AC09246363703231RH17392447.86    1 AC004524, AC004555, AC092463
S/G/Y/R/B/O NT_006051AC09246363703231RH25438447.56    1 AC004524, AC004555, AC092463
S/G/Y/R/B/O NT_006051AC09246363754151RH5763447.76    1AC093508, AC004524, AC093508
S/G/Y/R/B/O NT_006051AC09246363754151D4S394    441.901AC093508, AC004524, AC093508
S/G/Y/R/B/O NT_006051AC09244263339451RH75187440.19    1 AC004618, AC004624, AC004670, AC092442
S/G/Y/R/B/O NT_006051AC09244265305181RH27048440.23    1 AC004624, AC004670, AC005141, AC092442
S/G/Y/R/B/O NT_006051AC09244265321681RH59598441.234395.00436.901 AC004624, AC004670, AC005141, AC092442
S/G/Y/R/B/O NT_006051AC09244265324711RH36743440.30    1 AC004624, AC005141, AC092442
S/G/Y/R/B/O NT_006051AC09350864467311RH66601447.76    2AC092463, AC106045, AC004555, AC004604, AC092463, AC093508, AC106045
S/G/Y/R/B/O NT_006051AC09350864475581RH10146447.86    2AC092463, AC106045, AC004555, AC004604, AC092463, AC093508, AC106045
S/G/Y/R/B/O NT_006051AC09350864475681RH78392447.86    2AC092463, AC106045, AC004555, AC092463, AC093508, AC106045
S/G/Y/R/B/O NT_006051AC10959365733823          
S/G/Y/R/B/O NT_006051AC10591566262521RH59483445.04  437.101AC022529, AC004795, AC005141, AC005289, AC022529, AC105915
S/G/Y/R/B/O NT_006051AC10591566622791RH48165438.67    1AC022529, AC005141, AC005289, AC022529, AC105915
S/G/Y/R/B/O NT_006051AC10591566673281RH48806438.67    1AC022529, AC005141, AC005289, AC022529, AC105915
S/G/Y/R/B/O NT_006051AC10591566703591RH25736438.67    1AC022529, AC004795, AC005141, AC005289, AC022529, AC105915
S/G/Y/R/B/O NT_006051AC10591566703821RH41394439.77    1AC022529, AC004795, AC005141, AC005289, AC022529, AC105915, AC116613
S/G/Y/R/B/O NT_006051AC10591566707191RH59474438.67  434.501AC022529, AC004795, AC005141, AC005289, AC022529, AC105915
S/G/Y/R/B/O NT_006051AC10591566714111RH47291439.61    1AC022529, AC005141, AC005289, AC022529, AC105915
S/G/Y/R/B/O NT_006051AC10591566714341RH10849438.674400.00  1AC022529, AC005141, AC005289, AC022529, AC105915
S/G/Y/R/B/O NT_006051AC10591566714371RH59422438.88  435.201AC022529, AC005141, AC005289, AC022529, AC105915
S/G/Y/R/B/O NT_006051AC10591567590911RH59626438.944393.00434.801AC008130, AC022529, AC005289, AC008130, AC022529, AC105915
S/G/Y/R/B/O NT_006051AC02252966321721          
S/G/Y/R/B/O NT_006051AC11361569060371          
S/G/Y/R/B/O NT_006051AC11631770671561RH18365440.71    1AC113615, AC004689, AC079794, AC113615, AC116317
S/G/Y/R/B/O NT_006051AC11631770683271RH75336439.98    1AC113615, AC004689, AC079794, AC113615, AC116317
S/G/Y/R/B/O NT_006051AC11631770684551RH48944440.71    1AC113615, AC004689, AC079794, AC113615, AC116317
S/G/Y/R/B/O NT_006051AC11631771243431RH74660  4473.00  1 AC004599, AC004689, AC116317
S/G/Y/R/B/O NT_006051AC11631771254181RH94038440.71    1 AC004599, AC004689, AC116317
S/G/Y/R/B/O NT_006051AC11631771259511RH59386440.23  435.201 AC004599, AC004689, AC116317
S/G/Y/R/B/O NT_006051AC11631771692481RH26531445.04    1 AC004599, AC004689, AC116317
S/G/Y/R/B/O NT_006051AC11631771700661RH59207440.61  437.101 AC004599, AC004689, AC116317


  NT_006051 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006051AC11631771704601RH59361440.23  436.201 AC004599, AC004689, AC116317
S/G/Y/R/B/O NT_006051 - RH102704442.74    1AC093323, AC114805, AC004480, AC093323, AC114805
S/G/Y/R/B/O NT_006051 - RH30856  4459.00  1AC093323, AC114805, AC114815, AC004480, AC093323, AC114805, AC114815
S/G/Y/R/B/O NT_006051 - RH11115434.92    0AC110814, AC110814
S/G/Y/R/B/O NT_006051 - RH11515442.74    1AC093323, AC114805, AC004480, AC093323, AC114805, AF116272
S/G/Y/R/B/O NT_006051 - RH11602442.74    1AC093323, AC114805, AC114815, AC004480, AC093323, AC114805, AC114815
S/G/Y/R/B/O NT_006051 - RH15999442.84    1AC093323, AC004480, AC093323
S/G/Y/R/B/O NT_006051 - RH16996442.84    1AC093323, AC114805, AC114815, AC004480, AC093323, AC114805, AC114815
S/G/Y/R/B/O NT_006051 - RH18354442.84    1AC093323, AC004480, AC093323
S/G/Y/R/B/O NT_006051 - RH18433450.48    0  
S/G/Y/R/B/O NT_006051 - RH36525450.48    0AC092463, AC097382, AC092463, AC097382
S/G/Y/R/B/O NT_006051 - RH41272444.74    1AC106045, AC004604, AC106045
S/G/Y/R/B/O NT_006051 - RH45546445.04    0  
S/G/Y/R/B/O NT_006051 - RH59260445.04    1AC093323, AC004480, AC004604, AC093323
S/G/Y/R/B/O NT_006051 - RH59303444.47    1AC093323, AC004480, AC093323
S/G/Y/R/B/O NT_006051 - RH59379445.044466.00  1AC093323, AC114805, AC114815, AC004480, AC093323, AC114805, AC114815
S/G/Y/R/B/O NT_006051 - RH59468442.84    1AC093323, AC114805, AC004480, AC093323, AC114805, AF116272
S/G/Y/R/B/O NT_006051 - RH38462  4466.00  1AC093323, AC004480, AC093323
S/G/Y/R/B/O NT_006051 - RH59493442.84    1AC093323, AC114805, AC004479, AC004480, AC093323, AC114805, AF116272
S/G/Y/R/B/O NT_006051 - RH38631  4452.00  1AC114815, AC004599, AC114815
S/G/Y/R/B/O NT_006051 - RH59508442.84    1AC106045, AC004604, AC106045
S/G/Y/R/B/O NT_006051 - RH7994  4302.00  0 U72648
S/G/Y/R/B/O NT_006051 - RH59521442.74    1AC093323, AC114805, AC004480, AC093323, AC114805
S/G/Y/R/B/O NT_006051 - RH59621442.74    1AC114815, AC004480, AC114815
S/G/Y/R/B/O NT_006051 - RH66005445.04    1AC093323, AC004480, AC004604, AC093323
S/G/Y/R/B/O NT_006051 - RH66868442.84    1AC093323, AC004480, AC093323, AF116272
S/G/Y/R/B/O NT_006051 - RH78266444.74    1AC093323, AC114805, AC004479, AC004480, AC093323, AC114805, AF116272
S/G/Y/R/B/O NT_006051 - RH78489445.04    1AC093323, AC114805, AC004479, AC004480, AC093323, AC114805
S/G/Y/R/B/O NT_006051 - RH80417445.04    1AC093323, AC004480, AC093323
S/G/Y/R/B/O NT_006051 - RH91191440.19    0  
S/G/Y/R/B/O NT_006051 - RH93089450.52    0 AC004524