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  Chromosome 4 - RH Maps - Single Contig
 

Chromosome 4 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_026996 NT_006111 NT_022865 NT_006081 NT_033075 NT_029956 NT_006051 NT_033060
NT_033064 NT_006362 NT_006307 NT_006342 NT_029958 NT_016407 NT_033056 NT_030649
NT_006344 NT_023072 NT_033076 NT_006350 NT_006285 NT_006316 NT_023052 NT_006189
NT_022794 NT_006305 NT_022751 NT_022995 NT_033067 NT_006098 NT_029274 NT_033069
NT_016297 NT_022782 NT_033059 NT_006238 NT_022831 NT_022853 NT_022850 NT_022778
NT_022852 NT_033063 NT_022813 NT_022836 NT_022862 NT_006303 NT_030640 NT_033073
NT_006281 NT_006216 NT_033072 NT_022760 NT_006109 NT_006328 NT_022844 NT_030642
NT_006114 NT_030659 NT_006204 NT_033074 NT_023068 NT_006201 NT_006383 NT_006397
NT_033061 NT_033068 NT_006365 NT_028147 NT_028173 NT_006371 NT_025694 NT_031780
NT_016599 NT_031781 NT_016354 NT_033055 NT_033062 NT_033065 NT_006167 NT_006302
NT_022755 NT_022753 NT_022803 NT_022846 NT_022856 NT_022805 NT_022819 NT_022845
NT_006124 NT_022811 NT_006127 NT_006258 NT_016606 NT_029950 NT_028160 NT_029954
NT_022851 NT_022832 NT_015169 NT_006129 NT_022740 NT_029955 NT_022801 NT_022824
NT_006171 NT_022776 NT_022768 NT_006198 NT_006257 NT_022775 NT_006118 NT_022792
NT_006256 NT_006169 NT_022841 NT_033070 NT_022800 NT_033066 NT_033071 NT_028146
NT_029961 NT_025688


  NT_006344
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006344AC025562149976391          
S/G/Y/R/B/O NT_006344AC006425150585501RH48154474.58    1AC114744, AC006425, AC114744, AC116651
S/G/Y/R/B/O NT_006344AC006425150807361WI-11209    484.701AC114744, AC006425, AC114744
S/G/Y/R/B/O NT_006344AC006425150820451RH94215472.10    1AC114744, AC006425, AC114744
S/G/Y/R/B/O NT_006344AC006425150827591RH59048476.51  484.701AC114744, AC006425, AC114744
S/G/Y/R/B/O NT_006344AC006425150829351SGC31945    485.701AC114744, AC006425, AC114744
S/G/Y/R/B/O NT_006344AC006425150857631RH41311471.38    1AC114744, AC006425, AC114744
S/G/Y/R/B/O NT_006344AC006425151974371RH59029476.514998.00484.701AC114744, AC006425, AC114744
S/G/Y/R/B/O NT_006344AC006425151975511RH36393471.54    1AC114744, AC006425, AC114744
S/G/Y/R/B/O NT_006344AC114744151707561RH564272134.49  2198.602AC104654, AC013480, AC104654, AC114744
S/G/Y/R/B/O NT_006344AC114744151710231RH257402130.63    2AC104654, AC013480, AC104654
S/G/Y/R/B/O NT_006344AC005798152023153WI-9983    484.701AC006425, AC114744, AC005798, AC006425, AC114744
S/G/Y/R/B/O NT_006344AC005798152449483RH75208478.23    1AC006425, AC114744, AB009298, AC005798, AC006425, AC092459, AC114744
S/G/Y/R/B/O NT_006344AC005798152918493RH30859  4948.00  1 AC005798, AC092459
S/G/Y/R/B/O NT_006344AC005798153142043RH59348474.484998.00485.701 AC005798, AC092459
S/G/Y/R/B/O NT_006344AC005798153142103RH11094471.38    1 AC005798, AC092459
S/G/Y/R/B/O NT_006344AC005798153186843RH65939476.51    1 AC005798, AC092459
S/G/Y/R/B/O NT_006344AC005798153864053RH17428471.38    1AC005598, AC005598, AC005798, AC092459
S/G/Y/R/B/O NT_006344AC005798154011883RH2079  4994.00  1AC005598, AC005598, AC005798, AF149412
S/G/Y/R/B/O NT_006344AC005798154012173RH41327470.65    1AC005598, AC005598, AC005798, AF149412
S/G/Y/R/B/O NT_006344AC005598154258673RH92297476.51    1 AC005598
S/G/Y/R/B/O NT_006344AC005598154338333RH59032476.51  484.702AC016378, AC079946, AC112127, AC005598, AC016378, AC079946, AC112127
S/G/Y/R/B/O NT_006344AC005598154853713RH5918476.51  484.601 AC005598
S/G/Y/R/B/O NT_006344AC005598154853713RH29090  4994.00  1 AC005598
S/G/Y/R/B/O NT_006344AC108063156261093RH69420471.17    1AC110088, AC108063, AC110088
S/G/Y/R/B/O NT_006344AC108063156269033RH59150478.234995.00486.301AC110088, AC108063, AC110088
S/G/Y/R/B/O NT_006344AC108063156281203RH47068476.61    1AC110088, AC108063, AC110088
S/G/Y/R/B/O NT_006344AC110088156880551RH68040471.38    1 AC110088
S/G/Y/R/B/O NT_006344AC006427157256883RH98212476.51    1AC110088, AC006427, AC110088
S/G/Y/R/B/O NT_006344AC006427157567073RH59507473.054998.00484.601 AC006427
S/G/Y/R/B/O NT_006344AC006427158649863RH26719476.51    1 AC006427
S/G/Y/R/B/O NT_006344AC097515158761233          
S/G/Y/R/B/O NT_006344AC105353160400963          
S/G/Y/R/B/O NT_006344AC104656161029443RH68334473.05    1 AC025827, AC025827, AC104656
S/G/Y/R/B/O NT_006344AC005690162968593RH15893478.23    1 AC005690, AC023057, AC060791
S/G/Y/R/B/O NT_006344AC005690163859213WI-3971    486.201AC068854, AC106894, AC107388, AC110758, AC110758, AC005690, AC068854, AC106894, AC107388, AC110758, AC110758
S/G/Y/R/B/O NT_006344AC106894164189493          
S/G/Y/R/B/O NT_006344AC110758165110801          
S/G/Y/R/B/O NT_006344AC069188165409981          
S/G/Y/R/B/O NT_006344AC107388165445601          
S/G/Y/R/B/O NT_006344AC068854165505731          
S/G/Y/R/B/O NT_006344AC093871166787783RH92088480.17    1AC025562, AC007523, AC021990, AC025562, AC093871
S/G/Y/R/B/O NT_006344AC007102168044293D4S934    487.901 AC007102
S/G/Y/R/B/O NT_006344AC097516169533173          
S/G/Y/R/B/O NT_006344AC106043171103813          
S/G/Y/R/B/O NT_006344AC079399171521933RH47077480.17    1 AC079399, AC084417
S/G/Y/R/B/O NT_006344AC005768173236783RH103028480.17    1 AC005768, AC027576, AC027783
S/G/Y/R/B/O NT_006344AC005768173252733RH67334480.17    1 AC005768, AC027576, AC027783
S/G/Y/R/B/O NT_006344AC005768173252973RH41400479.97    1 AC005768, AC027576, AC027783
S/G/Y/R/B/O NT_006344AC005768173256313RH48932480.17    1 AC005768, AC027576, AC027783


  NT_006344 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006344AC005768173617703RH14258  41082.00  1 AC005768, AC027576, AC027783
S/G/Y/R/B/O NT_006344AC005768173662733RH102454478.23    1 AC005768, AC027576, AC027783
S/G/Y/R/B/O NT_006344AC005768173732913RH33680  41077.00  1 AC005768, AC027576, AC027783, AC027785
S/G/Y/R/B/O NT_006344AC005768173734003RH16377478.23    1 AC005768, AC027576, AC027783, AC027785
S/G/Y/R/B/O NT_006344AC005768174150413RH30860  41082.00  1 AC005768
S/G/Y/R/B/O NT_006344AC006160175315603RH91361478.23    1 AC006160
S/G/Y/R/B/O NT_006344AC006160175330243RH59102478.2341077.00486.201 AC006160
S/G/Y/R/B/O NT_006344AC006160175359753RH47849478.23    1 AC006160
S/G/Y/R/B/O NT_006344AC006160175391103RH59389478.13  486.201 AC006160
S/G/Y/R/B/O NT_006344AC006160175418013RH102071478.23    1 AC006160
S/G/Y/R/B/O NT_006344AC006160175430433RH41312472.31    1 AC006160
S/G/Y/R/B/O NT_006344AC006160175591533RH59374478.2341077.00486.301 AC006160
S/G/Y/R/B/O NT_006344AC006160175592203RH26134478.23    1 AC006160
S/G/Y/R/B/O NT_006344AC093600176804113RH17917473.05    2AB053170, AB053170, AC018596, AC093600
S/G/Y/R/B/O NT_006344AC093600177082963RH66485478.13    2AB053170, AC011848, AB053170, AC011848, AC018596, AC093600
S/G/Y/R/B/O NT_006344AC074179178000573          
S/G/Y/R/B/O NT_006344AC006231179190293WI-11173    486.301AC069188, AC006231, AC069188
S/G/Y/R/B/O NT_006344 - RH102048478.23    0  
S/G/Y/R/B/O NT_006344 - RH38380  4995.00  1AC098827, AC040990, AC098827
S/G/Y/R/B/O NT_006344 - RH102842470.13    1AC007016, AC007016
S/G/Y/R/B/O NT_006344 - RH11683461.22    1AC005674, AC009528, AC005674, AC009528
S/G/Y/R/B/O NT_006344 - RH15122466.87    1AC007126, AC007126
S/G/Y/R/B/O NT_006344 - RH16225461.85    1AC067775, AC098976, AC067775, AC098976, AC108199
S/G/Y/R/B/O NT_006344 - RH16627474.58    1AC006445, AC006445
S/G/Y/R/B/O NT_006344 - RH17388476.51    0  
S/G/Y/R/B/O NT_006344 - RH20101471.54    1AC105289, AC114749, AC079010, AC092443, AC105289, AC114749
S/G/Y/R/B/O NT_006344 - RH26502474.58    1AC006226, AC006226
S/G/Y/R/B/O NT_006344 - RH26546474.58    1AC007016, AC007016, AC080071
S/G/Y/R/B/O NT_006344 - RH27078461.22    1AC067775, AC098976, AC067775, AC098976, AC108199
S/G/Y/R/B/O NT_006344 - RH27090474.58    1AC007370, AC007370, AC079899, AC093588
S/G/Y/R/B/O NT_006344 - RH35963474.58    1AC007016, AC007016, AC116651
S/G/Y/R/B/O NT_006344 - RH36271461.85    1AC005674, AC005674, AC092541
S/G/Y/R/B/O NT_006344 - RH36445472.10    0  
S/G/Y/R/B/O NT_006344 - RH36513478.23    0  
S/G/Y/R/B/O NT_006344 - RH41271474.58    1AC007126, AC007126
S/G/Y/R/B/O NT_006344 - RH45264469.71    1AC007370, AC007370, AC055859
S/G/Y/R/B/O NT_006344 - RH45270472.42    1AC007370, AC007370, AC079899, AC093588
S/G/Y/R/B/O NT_006344 - RH45461476.51    1AC007016, AC007016, AC080071
S/G/Y/R/B/O NT_006344 - RH46253474.58    1AC098829, AC114749, AC079010, AC098829, AC114749
S/G/Y/R/B/O NT_006344 - RH46286461.27    1AC067775, AC098976, AC067775, AC098976
S/G/Y/R/B/O NT_006344 - RH46909461.22    0  
S/G/Y/R/B/O NT_006344 - RH58926472.42    1AC007370, AC007370, AC079899, AC093588
S/G/Y/R/B/O NT_006344 - RH59067472.42  482.400  
S/G/Y/R/B/O NT_006344 - RH59078472.31    1AC007370, AC007370, AC079899, AC093588
S/G/Y/R/B/O NT_006344 - RH59312461.22    1AC067775, AC098976, AC067775, AC098976, AC108199
S/G/Y/R/B/O NT_006344 - RH59506472.00    1AC006230, AC006230
S/G/Y/R/B/O NT_006344 - RH59545472.42  482.400  
S/G/Y/R/B/O NT_006344 - RH59556474.584972.00482.400  
S/G/Y/R/B/O NT_006344 - RH59595474.19    1AC007370, AC007370, AC079899, AC093588
S/G/Y/R/B/O NT_006344 - RH8589  4955.00  0  


  NT_006344 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006344 - WI-5328    484.701AC006445, AC006445
S/G/Y/R/B/O NT_006344 - RH64970461.22    2AC005629, AC006453, AC098976, AC116050, AL663102, AC005629, AC006453, AC027487, AC098976, AC116050, AL663102
S/G/Y/R/B/O NT_006344 - RH65094473.36    0  
S/G/Y/R/B/O NT_006344 - RH65153476.51    1AC105289, AC114749, AC079010, AC092443, AC105289, AC114749
S/G/Y/R/B/O NT_006344 - RH66438474.58    1AC007370, AC007370, AC079899, AC093588
S/G/Y/R/B/O NT_006344 - RH66742461.22    1AC009528, AC093664, AC009528, AC093664
S/G/Y/R/B/O NT_006344 - RH67087469.71    1AC007370, AC007370, AC079899, AC093588
S/G/Y/R/B/O NT_006344 - RH67768470.65    1AC099550, AC110755, AC006297, AC099550, AC110755
S/G/Y/R/B/O NT_006344 - RH68471471.90    0  
S/G/Y/R/B/O NT_006344 - RH69894468.68    1AC105289, AC114749, AC079010, AC105289, AC114749
S/G/Y/R/B/O NT_006344 - RH70344462.06    1AC067775, AC098976, AC067775, AC098976, AC108199
S/G/Y/R/B/O NT_006344 - RH75378478.23    0  
S/G/Y/R/B/O NT_006344 - RH76052472.10    1AC098829, AC114749, AC079010, AC098829, AC114749
S/G/Y/R/B/O NT_006344 - RH76066474.09    1AC006445, AC006445
S/G/Y/R/B/O NT_006344 - RH78843472.00    1AC006230, AC073991, AC006230, AC073991
S/G/Y/R/B/O NT_006344 - RH92883474.58    1AC007016, AC007016
S/G/Y/R/B/O NT_006344 - RH94039472.00    1AC110768, AC106864, AC110768
S/G/Y/R/B/O NT_006344 - RH98451472.00    1AC084048, AC108151, AC084048, AC108151