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  Chromosome 4 - RH Maps - Single Contig
 

Chromosome 4 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_026996 NT_006111 NT_022865 NT_006081 NT_033075 NT_029956 NT_006051 NT_033060
NT_033064 NT_006362 NT_006307 NT_006342 NT_029958 NT_016407 NT_033056 NT_030649
NT_006344 NT_023072 NT_033076 NT_006350 NT_006285 NT_006316 NT_023052 NT_006189
NT_022794 NT_006305 NT_022751 NT_022995 NT_033067 NT_006098 NT_029274 NT_033069
NT_016297 NT_022782 NT_033059 NT_006238 NT_022831 NT_022853 NT_022850 NT_022778
NT_022852 NT_033063 NT_022813 NT_022836 NT_022862 NT_006303 NT_030640 NT_033073
NT_006281 NT_006216 NT_033072 NT_022760 NT_006109 NT_006328 NT_022844 NT_030642
NT_006114 NT_030659 NT_006204 NT_033074 NT_023068 NT_006201 NT_006383 NT_006397
NT_033061 NT_033068 NT_006365 NT_028147 NT_028173 NT_006371 NT_025694 NT_031780
NT_016599 NT_031781 NT_016354 NT_033055 NT_033062 NT_033065 NT_006167 NT_006302
NT_022755 NT_022753 NT_022803 NT_022846 NT_022856 NT_022805 NT_022819 NT_022845
NT_006124 NT_022811 NT_006127 NT_006258 NT_016606 NT_029950 NT_028160 NT_029954
NT_022851 NT_022832 NT_015169 NT_006129 NT_022740 NT_029955 NT_022801 NT_022824
NT_006171 NT_022776 NT_022768 NT_006198 NT_006257 NT_022775 NT_006118 NT_022792
NT_006256 NT_006169 NT_022841 NT_033070 NT_022800 NT_033066 NT_033071 NT_028146
NT_029961 NT_025688


  NT_006098
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006098AC027082373082271RH455501584.81    2AL121985, AC027082, AL121985, AL354714
S/G/Y/R/B/O NT_006098AC027082373924091RH493671579.89    2AL121985, AC027082, AL121985, AL354714
S/G/Y/R/B/O NT_006098AC027082374077501RH498971584.71  1706.002AL138930, AC012471, AC027082, AL138930, AL355996
S/G/Y/R/B/O NT_006098AC027082374079341RH180331579.89    2AL138930, AC012471, AC027082, AL138930, AL355996
S/G/Y/R/B/O NT_006098AC027082374081381RH791451589.61    2AL138930, AC012471, AC027082, AL138930, AL355996
S/G/Y/R/B/O NT_006098AC027082374101911RH480781578.06    2AL138930, AC012471, AC027082, AL138930, AL355996
S/G/Y/R/B/O NT_006098AC108044372669521RH252514175.63    1 AC108044
S/G/Y/R/B/O NT_006098AC108044372671751RH8323  42345.00  1 AC108044
S/G/Y/R/B/O NT_006098AC108044372717071RH460884181.90    1 AC108044
S/G/Y/R/B/O NT_006098AC108044372733351RH806814183.77    1 AC108044
S/G/Y/R/B/O NT_006098AC108044372735051RH916124180.02    1 AC108044
S/G/Y/R/B/O NT_006098AC024388375693441RH454114181.90    1AC027164, AC108044, AC024388, AC027164, AC108044
S/G/Y/R/B/O NT_006098AC027164375657641RH178044173.46    1AC024388, AC027082, AC108044, AC024388, AC027082, AC027164, AC108044
S/G/Y/R/B/O NT_006098AC027164375657781RH368074180.02    1AC024388, AC027082, AC108044, AC024388, AC027082, AC027164, AC108044
S/G/Y/R/B/O NT_006098AC027164375657971RH172374174.49    1AC024388, AC027082, AC108044, AC024388, AC027082, AC027164, AC108044
S/G/Y/R/B/O NT_006098AC079921376048641RH1036684181.90    1 AC079921
S/G/Y/R/B/O NT_006098AC010925376829891RH594604174.49  4187.601AC079921, AC010925, AC079921
S/G/Y/R/B/O NT_006098AC010925376829891RH38474  42366.00  1AC079921, AC010925, AC079921
S/G/Y/R/B/O NT_006098AC010925377419311RH592054183.20  4195.901AC079921, AC010925, AC079921
S/G/Y/R/B/O NT_006098AC010925377424781RH489404180.99    1AC079921, AC010925, AC079921
S/G/Y/R/B/O NT_006098AC010925377435221RH178234174.49    1AC079921, AC010925, AC079921
S/G/Y/R/B/O NT_006098AC010925377435971RH594044183.99  4196.001AC079921, AC010925, AC079921
S/G/Y/R/B/O NT_006098AC010925377442731RH678984174.08    1AC079921, AC010925, AC079921
S/G/Y/R/B/O NT_006098AC010925377460961RH932294183.99    1AC079921, AC010925, AC079921
S/G/Y/R/B/O NT_006098AC093855379064973RH767314182.53    1 AC093855
S/G/Y/R/B/O NT_006098AC093855379082003RH686924187.56    1 AC093855
S/G/Y/R/B/O NT_006098AC093855379084213RH593594181.74  4197.001 AC093855
S/G/Y/R/B/O NT_006098AC093855379084213RH682764178.83    1 AC093855
S/G/Y/R/B/O NT_006098AC093855379084263RH589454186.55  4199.101 AC093855
S/G/Y/R/B/O NT_006098AC093855379087343RH413204184.22    1 AC093855
S/G/Y/R/B/O NT_006098AC093855379093293RH414484178.83    1 AC093855
S/G/Y/R/B/O NT_006098AC023135379502653          
S/G/Y/R/B/O NT_006098AC021148380688803RH1042454193.98    1 AC021148, AC069481
S/G/Y/R/B/O NT_006098AC021148380697433RH755754187.33    1 AC021148, AC069481
S/G/Y/R/B/O NT_006098AC021148381198233RH450894191.28    1 AC021148, AC069481, AJ272281
S/G/Y/R/B/O NT_006098AC021148381198823RH675144189.26    1 AC021148, AC069481, AJ272281
S/G/Y/R/B/O NT_006098AC021148381682623RH413714185.46    1 AC021148, AC069481
S/G/Y/R/B/O NT_006098AC021148381686153RH936514193.36    1 AC021148
S/G/Y/R/B/O NT_006098AC021148381694783RH1026554193.98    1 AC021148
S/G/Y/R/B/O NT_006098AC105427381792523          
S/G/Y/R/B/O NT_006098AC108471387042391RH658664193.98    1AC023006, AC027207, AC105287, AC023006, AC027207, AC105287, AC108471
S/G/Y/R/B/O NT_006098AC095057383223001RH414494195.99    1AC068340, AC068340, AC095057
S/G/Y/R/B/O NT_006098AC095057383415231RH412664189.26    1AC068340, AC068340, AC095057
S/G/Y/R/B/O NT_006098AC068340382560641          
S/G/Y/R/B/O NT_006098AC098591383986751RH658204193.56    1AC068340, AC095057, AC037439, AC046162, AC068340, AC095057, AC098591
S/G/Y/R/B/O NT_006098AC098591384082371RH269734193.86    1AC068340, AC095057, AC037439, AC068340, AC095057, AC098591
S/G/Y/R/B/O NT_006098AC098591384088731RH926974196.19    1AC068340, AC095057, AC068340, AC095057, AC098591
S/G/Y/R/B/O NT_006098AC098591384118681RH1019604199.44    1AC068340, AC095057, AC037439, AC068340, AC095057, AC098591
S/G/Y/R/B/O NT_006098AC098591389362431RH712474190.44    1AC068352, AC090081, AC113150, AC037439, AC068352, AC090081, AC098591, AC113150
S/G/Y/R/B/O NT_006098AC027207386831981          


  NT_006098 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006098AC023006386850551          
S/G/Y/R/B/O NT_006098AC113150387776511RH925134193.98    1AC022862, AC027207, AC105287, AC022862, AC027207, AC105287, AC113150
S/G/Y/R/B/O NT_006098AC113150387798741RH592634191.79  4203.401AC027207, AC027207
S/G/Y/R/B/O NT_006098AC113150387813301RH412814190.00    1AC022862, AC023006, AC027207, AC105287, AC022862, AC023006, AC027207, AC105287, AC113150
S/G/Y/R/B/O NT_006098AC113150387814861RH254944184.67    1AC022862, AC023006, AC027207, AC105287, AC022862, AC023006, AC027207, AC105287, AC113150
S/G/Y/R/B/O NT_006098AC113150387907921RH414184186.32    1AC022862, AC023006, AC027207, AC105287, AC022862, AC023006, AC027207, AC105287, AC113150
S/G/Y/R/B/O NT_006098AC113150388550701RH413874184.56    1AC022862, AC068352, AC022862, AC068352, AC113150
S/G/Y/R/B/O NT_006098AC105287387404441RH595314190.00  4204.101AC022862, AC023006, AC027207, AC022862, AC023006, AC027207, AC105287
S/G/Y/R/B/O NT_006098AC022862387695581          
S/G/Y/R/B/O NT_006098AC068352388284561          
S/G/Y/R/B/O NT_006098AC090081389114871          
S/G/Y/R/B/O NT_006098 - RH102844168.27    1AC036185, AC093271, AC027607, AC036185, AC093271
S/G/Y/R/B/O NT_006098 - WI-11217    4186.001AC108022, AC108022, AL390202
S/G/Y/R/B/O NT_006098 - RH127964179.91    1AC036185, AC093271, AC027607, AC036185, AC093271
S/G/Y/R/B/O NT_006098 - RH164634183.03    1AC021106, AC021106
S/G/Y/R/B/O NT_006098 - RH251534180.02    1AC021860, AC021860
S/G/Y/R/B/O NT_006098 - RH251954178.06    1AC022463, AC093271, AC022463, AC093271
S/G/Y/R/B/O NT_006098 - RH258954182.07    1AC021106, AC021106, AL390202
S/G/Y/R/B/O NT_006098 - RH358964178.39    1AC021106, AC021106, AF200719
S/G/Y/R/B/O NT_006098 - RH362064173.46    1AC021860, AC021860
S/G/Y/R/B/O NT_006098 - RH362404189.26    1AC026833, AC098869, AC026833, AC098869
S/G/Y/R/B/O NT_006098 - RH412774166.05    1AC022463, AC107399, AC022463, AC107399
S/G/Y/R/B/O NT_006098 - RH412784168.40    1AC022463, AC093271, AC022463, AC093271
S/G/Y/R/B/O NT_006098 - RH413084167.68    1AC036185, AC027607, AC036185
S/G/Y/R/B/O NT_006098 - RH413894187.63    1AC012028, AC080115, AC012028, AC080115
S/G/Y/R/B/O NT_006098 - RH460994182.86    1AC098680, AC098680
S/G/Y/R/B/O NT_006098 - RH473334179.91    1AC022463, AC107399, AC022463, AC107399
S/G/Y/R/B/O NT_006098 - RH477034193.56    1AC026833, AC098869, AC026833, AC098869
S/G/Y/R/B/O NT_006098 - RH477224180.02    1AC098680, AC098680
S/G/Y/R/B/O NT_006098 - RH57834196.19    0  
S/G/Y/R/B/O NT_006098 - RH589444180.02  4189.501AC021106, AC021106, AL390202
S/G/Y/R/B/O NT_006098 - RH591034180.02  4189.901AC021106, AC021106, AL390202
S/G/Y/R/B/O NT_006098 - RH591074180.02  4190.701AC098680, AC098680
S/G/Y/R/B/O NT_006098 - RH591124176.25  4192.601AC021106, AC021106
S/G/Y/R/B/O NT_006098 - RH591484180.02  4192.601AC098680, AC098680
S/G/Y/R/B/O NT_006098 - D4S617    4192.601AC024023, AC024023, AC079088
S/G/Y/R/B/O NT_006098 - RH593444182.64  4192.601AC021860, AC021860
S/G/Y/R/B/O NT_006098 - RH593834180.02  4192.601AC108933, AC108933
S/G/Y/R/B/O NT_006098 - RH594774166.00    1AC098827, AC040990, AC098827
S/G/Y/R/B/O NT_006098 - RH595734180.88  4192.701AC022463, AC107399, AC022463, AC107399
S/G/Y/R/B/O NT_006098 - RH654664180.02    1AC098680, AC098680
S/G/Y/R/B/O NT_006098 - RH672504173.46    1AC021106, AC108933, AC021106, AC108933
S/G/Y/R/B/O NT_006098 - RH673444171.33    1AC021106, AC021106
S/G/Y/R/B/O NT_006098 - RH685664174.08    1AC021860, AC021860
S/G/Y/R/B/O NT_006098 - RH698104168.30    1AC022463, AC093271, AC022463, AC093271
S/G/Y/R/B/O NT_006098 - RH744514171.23    1AC098680, AC098680
S/G/Y/R/B/O NT_006098 - RH744524161.49    1AC104690, AC104690
S/G/Y/R/B/O NT_006098 - RH752434182.91    1AC021860, AC021860
S/G/Y/R/B/O NT_006098 - RH754954184.96    1AC108937, AC108937
S/G/Y/R/B/O NT_006098 - RH760364187.22    1AC012028, AC080115, AC108937, AC012028, AC080115, AC108937


  NT_006098 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006098 - RH781204184.11    1AC021860, AC021860
S/G/Y/R/B/O NT_006098 - RH923744181.90    1  
S/G/Y/R/B/O NT_006098 - RH925574182.35    1AC021106, AC021106
S/G/Y/R/B/O NT_006098 - RH935114193.98    0AC023006, AC105287, AC023006, AC105287
S/G/Y/R/B/O NT_006098 - RH936254180.02    0  
S/G/Y/R/B/O NT_006098 - RH939684179.91    1AC104690, AC007698, AC104690
S/G/Y/R/B/O NT_006098 - RH940654187.89    1AC026833, AC098869, AC026833, AC098869
S/G/Y/R/B/O NT_006098 - RH989054185.35    0  
S/G/Y/R/B/O NT_006098 - RH98944173.46    1AC098680, AC098680
S/G/Y/R/B/O NT_006098 - RH989984193.98    0AC023006, AC105287, AC023006, AC105287