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  Chromosome 4 - RH Maps - Single Contig
 

Chromosome 4 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_026996 NT_006111 NT_022865 NT_006081 NT_033075 NT_029956 NT_006051 NT_033060
NT_033064 NT_006362 NT_006307 NT_006342 NT_029958 NT_016407 NT_033056 NT_030649
NT_006344 NT_023072 NT_033076 NT_006350 NT_006285 NT_006316 NT_023052 NT_006189
NT_022794 NT_006305 NT_022751 NT_022995 NT_033067 NT_006098 NT_029274 NT_033069
NT_016297 NT_022782 NT_033059 NT_006238 NT_022831 NT_022853 NT_022850 NT_022778
NT_022852 NT_033063 NT_022813 NT_022836 NT_022862 NT_006303 NT_030640 NT_033073
NT_006281 NT_006216 NT_033072 NT_022760 NT_006109 NT_006328 NT_022844 NT_030642
NT_006114 NT_030659 NT_006204 NT_033074 NT_023068 NT_006201 NT_006383 NT_006397
NT_033061 NT_033068 NT_006365 NT_028147 NT_028173 NT_006371 NT_025694 NT_031780
NT_016599 NT_031781 NT_016354 NT_033055 NT_033062 NT_033065 NT_006167 NT_006302
NT_022755 NT_022753 NT_022803 NT_022846 NT_022856 NT_022805 NT_022819 NT_022845
NT_006124 NT_022811 NT_006127 NT_006258 NT_016606 NT_029950 NT_028160 NT_029954
NT_022851 NT_022832 NT_015169 NT_006129 NT_022740 NT_029955 NT_022801 NT_022824
NT_006171 NT_022776 NT_022768 NT_006198 NT_006257 NT_022775 NT_006118 NT_022792
NT_006256 NT_006169 NT_022841 NT_033070 NT_022800 NT_033066 NT_033071 NT_028146
NT_029961 NT_025688


  NT_006081
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006081AC05589026595061          
S/G/Y/R/B/O NT_006081Z5433426877533RH29114  4210.00  1 Z54334
S/G/Y/R/B/O NT_006081Z6992226929173          
S/G/Y/R/B/O NT_006081Z6827727432133RH48321428.11    1AC055890, AC084195, AC055890, AC084195, Z68277
S/G/Y/R/B/O NT_006081AL11011727484553          
S/G/Y/R/B/O NT_006081Z6887027747873RH80744428.90    1AC055890, AC084195, AP000780, AC055890, AC084195, AP000780, Z68870
S/G/Y/R/B/O NT_006081Z6887027845733RH75272424.01    1AC055890, AC084195, AP000780, AC055890, AC084195, AP000780, Z68870
S/G/Y/R/B/O NT_006081Z6875727858813RH48566428.11    1AC055890, AC084195, AP000780, AC055890, AC084195, AP000780, Z68757
S/G/Y/R/B/O NT_006081AC08419527917821          
S/G/Y/R/B/O NT_006081Z6849427922213          
S/G/Y/R/B/O NT_006081Z6816227929133          
S/G/Y/R/B/O NT_006081Z5407228185283          
S/G/Y/R/B/O NT_006081Z6827928763853RH68130431.36    1AC055890, AC084195, AP000780, AC055890, AC084195, AP000780, Z68279
S/G/Y/R/B/O NT_006081Z6827928766063RH7995  4185.00  1AC055890, AP000780, AC055890, AP000780, Z68279
S/G/Y/R/B/O NT_006081Z6827928791743RH41285428.11    1AC055890, AC084195, AP000780, AC055890, AC084195, AP000780, Z68279
S/G/Y/R/B/O NT_006081Z6827928793293RH91578428.11    1AC055890, AC084195, AP000780, AC055890, AC084195, AP000780, Z68279
S/G/Y/R/B/O NT_006081AL15813228814963          
S/G/Y/R/B/O NT_006081Z7461729277483RH11059428.11    1 AP001878, L29292, Z74617
S/G/Y/R/B/O NT_006081AL15813129361113          
S/G/Y/R/B/O NT_006081Z6828029487763RH12834429.92    1 L29298, Z68280
S/G/Y/R/B/O NT_006081Z6828029488733RH59636428.11  420.001 AP001878, L29298, Z68280
S/G/Y/R/B/O NT_006081Z6828029515593SGC38240    417.601 AP001878, Z68280
S/G/Y/R/B/O NT_006081Z6828029515593RH59193424.06    1 AP001878, Z68280
S/G/Y/R/B/O NT_006081Z6828029519223RH45949428.11    1 AP001878, Z68280
S/G/Y/R/B/O NT_006081Z6828029522553RH45299429.92    1 AP001878, Z68280
S/G/Y/R/B/O NT_006081Z6828029689563RH78223428.11    1AC091441, AC091441, AL390065, L29296, Z68280
S/G/Y/R/B/O NT_006081Z6828029699433RH11060428.11    1AC091441, AC091441, AL390065, L29296, Z68280
S/G/Y/R/B/O NT_006081Z6828029707403RH16401425.78    1 AL390065, L29296, Z68280
S/G/Y/R/B/O NT_006081Z6828029722303RH1438  4191.00  1 AL390065, Z68280
S/G/Y/R/B/O NT_006081Z6828029785013RH41395428.11    1AC091441, AC091441, AL390065, Z68280
S/G/Y/R/B/O NT_006081Z6828029786093RH59427429.92  419.901 AL390065, Z68280
S/G/Y/R/B/O NT_006081Z6970929803103RH66335428.11    1AC091441, AC091441, AL390065, Z69709, Z69711
S/G/Y/R/B/O NT_006081Z6970929829233RH25947428.11    1 Z69709, Z69711
S/G/Y/R/B/O NT_006081Z6970930013513RH103975428.11    1AC091441, AC091441, AL390065, Z69709, Z69711
S/G/Y/R/B/O NT_006081AC09144130030601          
S/G/Y/R/B/O NT_006081AP00078030032971          
S/G/Y/R/B/O NT_006081Z6938730128293RH652221552.04    2AC091441, AL450992, AC091441, AL390065, AL450992, Z69387
S/G/Y/R/B/O NT_006081Z6936630145103RH75250430.12    1AC091441, AC091441, AL390065, Z69366
S/G/Y/R/B/O NT_006081Z6936530219893          
S/G/Y/R/B/O NT_006081Z6827330334333          
S/G/Y/R/B/O NT_006081Z6828130624323          
S/G/Y/R/B/O NT_006081Z6819230871053RH70602428.11    1AC091441, AC091441, AL390065, Z68192
S/G/Y/R/B/O NT_006081Z6819230894713RH74920427.91    1AC091441, AC091441, AL390065, Z68192
S/G/Y/R/B/O NT_006081Z6819230927953RH45594429.92    1AC091441, AC091441, AL390065, Z68192
S/G/Y/R/B/O NT_006081Z6875630971263          
S/G/Y/R/B/O NT_006081AC00551631379883RH66772429.92    1AC091441, AL390059, AC005516, AC091441, AL390059, AL390065, Z49155
S/G/Y/R/B/O NT_006081AC00551632519533RH59534428.114201.00418.301AL390059, AC005516, AL390059, Z49769
S/G/Y/R/B/O NT_006081AC00551632624013WI-5430    420.001AL390059, AC005516, AL390059, Z49769
S/G/Y/R/B/O NT_006081AC00551632872433RH11058428.11    1AL390059, AL645949, AC005516, AL390059, AL645949, Z69837
S/G/Y/R/B/O NT_006081AC00551632892223RH78046429.92    1AL390059, AC005516, AL390059, Z69837


  NT_006081 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006081AC00551632922893RH66770428.11    1AL390059, AL645949, AC005516, AL390059, AL645949, Z69837
S/G/Y/R/B/O NT_006081AC00551632924143RH59079429.92  420.001AL390059, AL645949, AC005516, AL390059, AL645949, Z69837
S/G/Y/R/B/O NT_006081Z5424633204513          
S/G/Y/R/B/O NT_006081Z6827533455053          
S/G/Y/R/B/O NT_006081AL09683833727753RH92254428.11    1AL645949, AL096838, AL117391, AL645949, Z68274
S/G/Y/R/B/O NT_006081Z6908434159403          
S/G/Y/R/B/O NT_006081AL64594934342611RH15178428.01    1 AL645949
S/G/Y/R/B/O NT_006081AL64594934342611RH327  4228.00  1 AL645949
S/G/Y/R/B/O NT_006081AL39005934216361          
S/G/Y/R/B/O NT_006081 - RH41315431.36    0 U72648
S/G/Y/R/B/O NT_006081 - RH41344429.92    0Z68192, AL390065, Z68192
S/G/Y/R/B/O NT_006081 - RH41360426.40    0AL445236, AJ318893, AL445227, AL445236
S/G/Y/R/B/O NT_006081 - RH41424429.92    0AC074370, AC074370, Z69710
S/G/Y/R/B/O NT_006081 - RH59127427.91  417.800  
S/G/Y/R/B/O NT_006081 - RH59338428.11  420.000  
S/G/Y/R/B/O NT_006081 - RH65654428.11    0AL109760, AL109760
S/G/Y/R/B/O NT_006081 - RH67211425.88    1AC098976, AC105916, AC098976, AC105916
S/G/Y/R/B/O NT_006081 - RH71223429.92    1AL356865, AB048946, AC067895, AL356865
S/G/Y/R/B/O NT_006081 - RH77964428.11    0  
S/G/Y/R/B/O NT_006081 - RH98523428.11    0