Home    Genome Browser    BLAT Search    Help
  Chromosome 4 - RH Maps - Single Contig
 

Chromosome 4 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_026996 NT_006111 NT_022865 NT_006081 NT_033075 NT_029956 NT_006051 NT_033060
NT_033064 NT_006362 NT_006307 NT_006342 NT_029958 NT_016407 NT_033056 NT_030649
NT_006344 NT_023072 NT_033076 NT_006350 NT_006285 NT_006316 NT_023052 NT_006189
NT_022794 NT_006305 NT_022751 NT_022995 NT_033067 NT_006098 NT_029274 NT_033069
NT_016297 NT_022782 NT_033059 NT_006238 NT_022831 NT_022853 NT_022850 NT_022778
NT_022852 NT_033063 NT_022813 NT_022836 NT_022862 NT_006303 NT_030640 NT_033073
NT_006281 NT_006216 NT_033072 NT_022760 NT_006109 NT_006328 NT_022844 NT_030642
NT_006114 NT_030659 NT_006204 NT_033074 NT_023068 NT_006201 NT_006383 NT_006397
NT_033061 NT_033068 NT_006365 NT_028147 NT_028173 NT_006371 NT_025694 NT_031780
NT_016599 NT_031781 NT_016354 NT_033055 NT_033062 NT_033065 NT_006167 NT_006302
NT_022755 NT_022753 NT_022803 NT_022846 NT_022856 NT_022805 NT_022819 NT_022845
NT_006124 NT_022811 NT_006127 NT_006258 NT_016606 NT_029950 NT_028160 NT_029954
NT_022851 NT_022832 NT_015169 NT_006129 NT_022740 NT_029955 NT_022801 NT_022824
NT_006171 NT_022776 NT_022768 NT_006198 NT_006257 NT_022775 NT_006118 NT_022792
NT_006256 NT_006169 NT_022841 NT_033070 NT_022800 NT_033066 NT_033071 NT_028146
NT_029961 NT_025688


  NT_022853
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_022853AC111194567070621RH169874316.26    1 AC111194
S/G/Y/R/B/O NT_022853AC111194567081671RH596294335.57    1 AC111194
S/G/Y/R/B/O NT_022853AC111194567081671WI-7572    4417.101 AC111194
S/G/Y/R/B/O NT_022853AC111194567083911RH175964329.60    1 AC111194
S/G/Y/R/B/O NT_022853AC021220567360933RH704354333.98    1AC111194, AC021220, AC111194
S/G/Y/R/B/O NT_022853AC021220568022503AFM200WH2    4414.901 AC021220
S/G/Y/R/B/O NT_022853AC108209568839303          
S/G/Y/R/B/O NT_022853AC064824569256653          
S/G/Y/R/B/O NT_022853AC069200569984873RH590474334.02    1 AC069200
S/G/Y/R/B/O NT_022853AC069200569984873TIGR-A004S25    4411.101 AC069200
S/G/Y/R/B/O NT_022853AC069200569985013RH648644345.85    2AP002347, AC069200, AP001186, AP002347
S/G/Y/R/B/O NT_022853AC069200570255853RH412804351.02    1 AC069200
S/G/Y/R/B/O NT_022853AC069200570355933RH988384332.94    1 AC069200
S/G/Y/R/B/O NT_022853AC069200570540453RH413614352.82    1 AC069200
S/G/Y/R/B/O NT_022853AC069200570563173RH414044349.44    1 AC069200
S/G/Y/R/B/O NT_022853AC069200570572203RH590814333.04    1 AC069200
S/G/Y/R/B/O NT_022853AC069200570572203WI-18383    4410.601 AC069200
S/G/Y/R/B/O NT_022853AC069200570610083RH664984337.42    1 AC069200
S/G/Y/R/B/O NT_022853AC110372572236401RH594154336.08    1AC024243, AC024243, AC110372
S/G/Y/R/B/O NT_022853AC110372572236401WI-9371    4409.801AC024243, AC024243, AC110372
S/G/Y/R/B/O NT_022853AC110372572236811RH414414345.52    1AC024243, AC024243, AC110372
S/G/Y/R/B/O NT_022853AC024243572596633          
S/G/Y/R/B/O NT_022853AC084842573351291RH426114339.03    1AC112714, AC112714
S/G/Y/R/B/O NT_022853AC084842573351291RH29116  43291.00  1AC112714, AC112714
S/G/Y/R/B/O NT_022853AC112714573263421          
S/G/Y/R/B/O NT_022853AC110611574499831RH593974350.66    1 AC110611
S/G/Y/R/B/O NT_022853AC110611574499831WI-22710    4433.501 AC110611
S/G/Y/R/B/O NT_022853AC110611574509041RH653034345.43    1 AC110611
S/G/Y/R/B/O NT_022853AC110611574639451RH689234338.33    1AC079006, AC079006, AC110611
S/G/Y/R/B/O NT_022853AC079006575003691RH42888  43314.00  1AC110611, AC079006, AC110611
S/G/Y/R/B/O NT_022853AC092627575873343RH653874349.55    1AC079006, AC079006, AC092627
S/G/Y/R/B/O NT_022853AC022267578460493RH413354347.80    1 AC022267
S/G/Y/R/B/O NT_022853AC068620578837483RH941484350.24    1 AC068620
S/G/Y/R/B/O NT_022853AC068620578847643RH413704352.94    1 AC068620
S/G/Y/R/B/O NT_022853AC068620579478653RH591344350.71    2AC012221, AC107204, AC012221, AC027756, AC068620, AC107204, AC108709
S/G/Y/R/B/O NT_022853AC068620579478653WI-20631    4434.602AC012221, AC107204, AC012221, AC027756, AC068620, AC107204, AC108709
S/G/Y/R/B/O NT_022853AC068620579494253RH8618  43061.00  1 AC068620
S/G/Y/R/B/O NT_022853AC068620579901993RH414234311.84    1AC068478, AC068478, AC068620
S/G/Y/R/B/O NT_022853AC114766579985021          
S/G/Y/R/B/O NT_022853AC068478580091381RH659654344.77    1 AC068478
S/G/Y/R/B/O NT_022853AC068478580156001RH449524351.25    1 AC068478
S/G/Y/R/B/O NT_022853AC068478580206531RH671594332.73    1 AC068478
S/G/Y/R/B/O NT_022853AC068478580596391RH711121686.04    2AC114766, AL445493, AC068478, AC114766, AL445493
S/G/Y/R/B/O NT_022853AC108215581414171RH414174344.79    1 AC108215
S/G/Y/R/B/O NT_022853AC108215582125131RH171884332.67    1 AC108215
S/G/Y/R/B/O NT_022853AC108215582126251RH267674334.33    1 AC108215
S/G/Y/R/B/O NT_022853AC108215582126551RH670474352.01    1 AC108215
S/G/Y/R/B/O NT_022853AC108215582660151RH413574345.43    1AC022483, AC022483, AC108215
S/G/Y/R/B/O NT_022853AC022483583743283RH8737  43359.00  1AC055850, AC022483, AC055850
S/G/Y/R/B/O NT_022853AC022483583801113RH744534350.66    1 AC022483


  NT_022853 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_022853AC069307584709561RH178414353.05    1AC068261, AC068261, AC069307
S/G/Y/R/B/O NT_022853AC069307584748071RH414254351.02    1AC055850, AC068261, AC055850, AC068261, AC069307
S/G/Y/R/B/O NT_022853AC069307584948151RH594754350.0143359.00  1AC055850, AC068261, AC055850, AC068261, AC069307
S/G/Y/R/B/O NT_022853AC069307584948151SGC35370    4407.401AC055850, AC068261, AC055850, AC068261, AC069307
S/G/Y/R/B/O NT_022853AC069307585268771RH664724350.97    1AC055850, AC068261, AC055850, AC068261, AC069307
S/G/Y/R/B/O NT_022853AC069307585301931RH666034351.25    1AC055850, AC068261, AC055850, AC068261, AC069307
S/G/Y/R/B/O NT_022853AC069307585325111RH596104351.02    1AC055850, AC068261, AC055850, AC068261
S/G/Y/R/B/O NT_022853AC069307585325111WI-11762    4435.201AC055850, AC068261, AC055850, AC068261
S/G/Y/R/B/O NT_022853AC069307585325171RH13852  43356.00  1AC055850, AC068261, AC055850, AC068261, AC069307
S/G/Y/R/B/O NT_022853AC069307585921631WI-5548    4443.301AC068261, AC068261, AC069307
S/G/Y/R/B/O NT_022853AC069307585994061RH14078  43362.00  1AC068261, AC068261, AC069307
S/G/Y/R/B/O NT_022853AC069307586082851RH412904353.74    1AC068261, AC068261, AC069307
S/G/Y/R/B/O NT_022853AC069307586083221RH1032524353.17    1AC068261, AC068261, AC069307
S/G/Y/R/B/O NT_022853AC069307586372541RH412654353.86    1AC068261, AC068261, AC069307
S/G/Y/R/B/O NT_022853AC068261584609161          
S/G/Y/R/B/O NT_022853AC111197586559473          
S/G/Y/R/B/O NT_022853AC105390587140091          
S/G/Y/R/B/O NT_022853AC006222587741933RH38471  43362.00  1AC105390, AC006222, AC105390
S/G/Y/R/B/O NT_022853AC073196589219703          
S/G/Y/R/B/O NT_022853AC013724591230873RH667454347.35    1 AC013724
S/G/Y/R/B/O NT_022853AC107396591534163          
S/G/Y/R/B/O NT_022853AC093725592907323CHLC.GATA88G02    4368.601AC104804, AC036195, AC104804
S/G/Y/R/B/O NT_022853AC104804593579341          
S/G/Y/R/B/O NT_022853AC104790594499661          
S/G/Y/R/B/O NT_022853AC106867595194673          
S/G/Y/R/B/O NT_022853AC096725596289943          
S/G/Y/R/B/O NT_022853AC097710598096213          
S/G/Y/R/B/O NT_022853AC019133599644693          
S/G/Y/R/B/O NT_022853AC098675601480253          
S/G/Y/R/B/O NT_022853AC017091603495243RH1037294354.80    1 AC017091
S/G/Y/R/B/O NT_022853AC027782605046841          
S/G/Y/R/B/O NT_022853AC055850605110781          
S/G/Y/R/B/O NT_022853 - RH178134344.88    0  
S/G/Y/R/B/O NT_022853 - NIB1853    4378.001AC092663, AC092663
S/G/Y/R/B/O NT_022853 - RH589594350.90    1AC016089, AC098868, AC016089, AC098868
S/G/Y/R/B/O NT_022853 - RH413054353.40    1AP001767, AP001767
S/G/Y/R/B/O NT_022853 - RH787564334.23    0AC069200, AC069200
S/G/Y/R/B/O NT_022853 - RH987484345.96    0