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  Chromosome 6 - RH Maps - Single Contig
 

Chromosome 6 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033125 NT_033164 NT_033126 NT_033128 NT_033144 NT_033156 NT_033142 NT_033120
NT_033135 NT_033151 NT_033162 NT_033163 NT_033143 NT_033124 NT_033129 NT_033138
NT_033159 NT_026313 NT_033155 NT_033173 NT_033140 NT_033153 NT_023442 NT_033146
NT_033136 NT_033149 NT_033154 NT_033160 NT_033134 NT_029317 NT_007592 NT_033137
NT_033139 NT_033147 NT_033158 NT_033161 NT_033145 NT_033141 NT_033123 NT_033130
NT_033127 NT_033122 NT_033152 NT_033121 NT_033148 NT_033171 NT_033132 NT_033943
NT_033172 NT_033948 NT_033131 NT_033946 NT_007540 NT_023463 NT_007158 NT_029990
NT_023399 NT_033133 NT_007299 NT_019424 NT_007563 NT_033944 NT_033947 NT_030710
NT_025741 NT_027046 NT_023451 NT_029991 NT_007422 NT_007302 NT_007627 NT_007583


  NT_023399
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023399AL591073885100983          
S/G/Y/R/B/O NT_023399AL591030886780723          
S/G/Y/R/B/O NT_023399AL590426889422423CHLC.ATA28B11    6509.401 AC021845, AL590426
S/G/Y/R/B/O NT_023399AL590663889952523          
S/G/Y/R/B/O NT_023399AL355612891992013RH374206333.83    1 AL355612
S/G/Y/R/B/O NT_023399AL133460892125803          
S/G/Y/R/B/O NT_023399AL035466892967993WI-5807    6526.201 AL035466
S/G/Y/R/B/O NT_023399AL035466893128643RH376316337.81    1 AL035466
S/G/Y/R/B/O NT_023399AL603648893271293          
S/G/Y/R/B/O NT_023399AL603833893786983          
S/G/Y/R/B/O NT_023399AL365222895313453RH374546339.85    1 AL365222
S/G/Y/R/B/O NT_023399AL049595895859763RH131666340.46  6525.401 AL049595, AL390124
S/G/Y/R/B/O NT_023399AL049595896518073RH681896348.07    1 AL049595, AL390124, D10995
S/G/Y/R/B/O NT_023399AL049595896552623RH477466334.56    1 AL049595, AL390124
S/G/Y/R/B/O NT_023399AL390316896577353          
S/G/Y/R/B/O NT_023399AL591027897639763          
S/G/Y/R/B/O NT_023399AL603628898736113          
S/G/Y/R/B/O NT_023399AL590785898756053          
S/G/Y/R/B/O NT_023399AL591500900617643          
S/G/Y/R/B/O NT_023399AL050340901202273          
S/G/Y/R/B/O NT_023399AL353663902464623          
S/G/Y/R/B/O NT_023399AL391843903236373          
S/G/Y/R/B/O NT_023399AL356969903715093          
S/G/Y/R/B/O NT_023399AL512404905405933          
S/G/Y/R/B/O NT_023399AL035468906644943RH607386344.33  6527.201 AL035468
S/G/Y/R/B/O NT_023399AL121962906744023          
S/G/Y/R/B/O NT_023399AL121718908261543RH421746344.43  6521.401 AL121718
S/G/Y/R/B/O NT_023399AL121718908261543RH35177  63836.00  1 AL121718
S/G/Y/R/B/O NT_023399AL391709908373473          
S/G/Y/R/B/O NT_023399AL133226908719103          
S/G/Y/R/B/O NT_023399AL450327911265723RH940506343.83    1 AL450327
S/G/Y/R/B/O NT_023399AL450327911277853RH108116347.49    1 AL450327
S/G/Y/R/B/O NT_023399AL450327911312303RH7821  63841.00  1AL356776, AL356776, AL450327
S/G/Y/R/B/O NT_023399AL450327911312453RH467206347.78    1AL356776, AL356776, AL450327
S/G/Y/R/B/O NT_023399AL356776911330313          
S/G/Y/R/B/O NT_023399AL356374913014203          
S/G/Y/R/B/O NT_023399AL355796913918983RH610156334.96  6524.801 AL355796
S/G/Y/R/B/O NT_023399AL355796913925133RH32645  63850.00  1 AL355796
S/G/Y/R/B/O NT_023399AL355796913925373RH610766350.20  6527.301 AL355796
S/G/Y/R/B/O NT_023399AL355796913926063RH467916334.56    1 AL355796
S/G/Y/R/B/O NT_023399AL355796914272673RH919486351.61    1 AL355796
S/G/Y/R/B/O NT_023399AL355796914344723RH802146351.35    1 AL355796
S/G/Y/R/B/O NT_023399AL355379914744893          
S/G/Y/R/B/O NT_023399AL078601916134023WI-3966    6529.402AC012155, AC012155, AC023504, AL078601
S/G/Y/R/B/O NT_023399AL391840916757193RH169946352.21    2AC012155, AC012155, AC023504, AL391840
S/G/Y/R/B/O NT_023399AL391840916757233RH466256352.21    2AC012155, AC012155, AC023504, AL391840
S/G/Y/R/B/O NT_023399AL391840916772763RH251736352.21    2AC012155, AC012155, AC023504, AL391840
S/G/Y/R/B/O NT_023399AL451064917755153RH478316368.01    1 AL450316, AL451064
S/G/Y/R/B/O NT_023399AL035700918923833RH466686368.55    1 AL035700, AL450316
S/G/Y/R/B/O NT_023399AL035700918924203RH408506355.49    1 AL035700, AL450316


  NT_023399 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023399AL035700918928943RH696906355.39    1 AL035700, AL450316
S/G/Y/R/B/O NT_023399AL035700918940983RH161096354.97    1 AL035700, AL450316
S/G/Y/R/B/O NT_023399AL078462919070173          
S/G/Y/R/B/O NT_023399AL590241919954263          
S/G/Y/R/B/O NT_023399AL132875920896633RH374536354.97    1AC048371, AC048371, AL132875
S/G/Y/R/B/O NT_023399AL132875921054623RH609976357.37  6533.701AC048371, AC011851, AC048371, AF279654, AL132875
S/G/Y/R/B/O NT_023399AL132875921054913RH467136354.97    1AC048371, AC011851, AC048371, AF279654, AL132875
S/G/Y/R/B/O NT_023399AL132875921065363RH1022736368.70    1AC048371, AC011851, AC048371, AF279654, AL132875
S/G/Y/R/B/O NT_023399AL133475921223963          
S/G/Y/R/B/O NT_023399AL591135922573713RH374616354.97    1 AL159162, AL591135
S/G/Y/R/B/O NT_023399AL391595922791793          
S/G/Y/R/B/O NT_023399AL049696924198973RH37901  63965.00  1 AL049696, AL138732
S/G/Y/R/B/O NT_023399AL049696924722613RH467976367.90    1 AL049696, AL138732
S/G/Y/R/B/O NT_023399AL049696924723303RH1978  63956.00  1 AL049696, AL138732
S/G/Y/R/B/O NT_023399AL049696925343223RH157736355.28    1 AL049696
S/G/Y/R/B/O NT_023399AL049696925366343RH372896368.6563948.00  1 AL049696
S/G/Y/R/B/O NT_023399AL049696925366433RH669206355.18    1 AL049696
S/G/Y/R/B/O NT_023399AL359715925589903RH408536357.67    1 AL359715
S/G/Y/R/B/O NT_023399AL359715926534643RH748566368.01    1AC026880, AC012267, AC026880, AL359715
S/G/Y/R/B/O NT_023399AL359715926535373RH607116366.4363948.006538.001 AC012267, AL359715
S/G/Y/R/B/O NT_023399AL596028926620323          
S/G/Y/R/B/O NT_023399AL590824927162523          
S/G/Y/R/B/O NT_023399AL590035927691773          
S/G/Y/R/B/O NT_023399AL357892929668023CHLC.GATA62E12    6535.801 AL357892
S/G/Y/R/B/O NT_023399AL121930930884443          
S/G/Y/R/B/O NT_023399AL137123932237783          
S/G/Y/R/B/O NT_023399AL365446932947153          
S/G/Y/R/B/O NT_023399AC016100933168751WI-10698    6535.801AC016012, AC016012, AC016100
S/G/Y/R/B/O NT_023399AC016012933271131          
S/G/Y/R/B/O NT_023399AL445303933681263RH738  63929.00  1AC016012, AC016012, AL445303
S/G/Y/R/B/O NT_023399AL355352933859893          
S/G/Y/R/B/O NT_023399AL390057935556363          
S/G/Y/R/B/O NT_023399AL122017936758763RH375926360.0063901.00  1 AL122017
S/G/Y/R/B/O NT_023399AL122017937076393RH409756360.10    1 AL122017
S/G/Y/R/B/O NT_023399AL122017937132033RH639796369.09  6538.401 AL122017
S/G/Y/R/B/O NT_023399AL122017937132033RH684816360.10    1 AL122017
S/G/Y/R/B/O NT_023399AL359693937353673          
S/G/Y/R/B/O NT_023399AL078599939276363WI-3678    6539.901 AL078599, AL136316
S/G/Y/R/B/O NT_023399AL078599939356853RH424566360.20  6546.501 AL078599, AL136316
S/G/Y/R/B/O NT_023399AL078599939356853RH494  63909.00  1 AL078599, AL136316
S/G/Y/R/B/O NT_023399AL078599939364473RH157816360.20    1 AL078599, AL136316
S/G/Y/R/B/O NT_023399AL078599939383443WI-5170    6512.601 AL078599, AL136316
S/G/Y/R/B/O NT_023399AL078599939390983RH185516368.28    1 AL078599, AL136316
S/G/Y/R/B/O NT_023399AL078599939399593RH608256364.91  6539.301 AL078599, AL136316
S/G/Y/R/B/O NT_023399AL078599939425923RH265906367.68    1  
S/G/Y/R/B/O NT_023399AL078599939426293RH468376368.28    1 AL078599
S/G/Y/R/B/O NT_023399AL355294940138593          
S/G/Y/R/B/O NT_023399AL360157941147753          
S/G/Y/R/B/O NT_023399AL356492942906673          
S/G/Y/R/B/O NT_023399AL050333943608943RH373046368.22    1 AC025610, AL050333


  NT_023399 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023399AL050333943671533RH692716363.05    1 AC025610, AL050333
S/G/Y/R/B/O NT_023399AL050333944049923RH160576368.98    1 AC025610, AL050333
S/G/Y/R/B/O NT_023399AL050333944051563RH250656368.22    1 AC025610, AL050333
S/G/Y/R/B/O NT_023399AL121977945568933RH749126369.51    1 AJ012159, AL121977
S/G/Y/R/B/O NT_023399AL121977945571023RH410566366.49    1 AJ012159, AL121977
S/G/Y/R/B/O NT_023399AL121977945572193RH692876365.09    1 AJ012159, AL121977
S/G/Y/R/B/O NT_023399AL121977945612423RH483556366.17    1 AL121977
S/G/Y/R/B/O NT_023399AL132670945665593          
S/G/Y/R/B/O NT_023399AL596184947084033          
S/G/Y/R/B/O NT_023399AL353661947723811          
S/G/Y/R/B/O NT_023399AC012132948213181          
S/G/Y/R/B/O NT_023399AC026880948226061          
S/G/Y/R/B/O NT_023399AC073142948278331          
S/G/Y/R/B/O NT_023399AC048371948332531          
S/G/Y/R/B/O NT_023399AL450333950627853RH258556368.76    1 AL450333
S/G/Y/R/B/O NT_023399AL450482950854823          
S/G/Y/R/B/O NT_023399AL034377951820933RH987256368.22    1 AL034377, AL161441, AL355613
S/G/Y/R/B/O NT_023399AL034377951906663WI-3777    6542.401 AL034377, AL161441, AL355613
S/G/Y/R/B/O NT_023399AL450483952007533          
S/G/Y/R/B/O NT_023399AL357121952618743          
S/G/Y/R/B/O NT_023399AL139333953138593          
S/G/Y/R/B/O NT_023399AL121716954569933RH408576367.36    1 AL121716
S/G/Y/R/B/O NT_023399AL121716954578313RH609346370.12  6560.401 AL121716
S/G/Y/R/B/O NT_023399AL121716954605413RH160516369.62    1 AL121716
S/G/Y/R/B/O NT_023399AL049699954855783RH609496372.16  6548.701 AL049699
S/G/Y/R/B/O NT_023399AL049699954880463RH610426371.9563996.006548.801 AL049699
S/G/Y/R/B/O NT_023399AL049699954881223RH161896370.12    1 AL049699
S/G/Y/R/B/O NT_023399AL049699954998713RH609926370.05  6560.601 AL049699, AL390998
S/G/Y/R/B/O NT_023399AL049699955007943RH160716370.05    1 AL049699, AL390998
S/G/Y/R/B/O NT_023399AL049699955010463RH373616369.41    1 AL049699, AL390998
S/G/Y/R/B/O NT_023399AL136970955901173          
S/G/Y/R/B/O NT_023399AL391416956340003          
S/G/Y/R/B/O NT_023399AL355577957592783          
S/G/Y/R/B/O NT_023399AL121939958149463RH934876373.70    1 AL121939
S/G/Y/R/B/O NT_023399AL109915958423553RH610676372.16  6547.901 AL109915
S/G/Y/R/B/O NT_023399AL109915958425483RH158066373.70    1 AL109915
S/G/Y/R/B/O NT_023399AL109915959652233RH131806369.19    1 AC019158
S/G/Y/R/B/O NT_023399AL109915959703863WI-4471    6548.101 AC019158, AL109915
S/G/Y/R/B/O NT_023399AL136972959990913          
S/G/Y/R/B/O NT_023399AL391281960501793          
S/G/Y/R/B/O NT_023399AL139232961497353RH374766369.19    1 AL139232
S/G/Y/R/B/O NT_023399AL034347962496703RH171256371.09    1 AL034347
S/G/Y/R/B/O NT_023399AL161621963800283RH610436376.84  6557.201 AL161621, AL590071
S/G/Y/R/B/O NT_023399AL161621963800833RH757376369.09    1 AL161621, AL590071
S/G/Y/R/B/O NT_023399AL138742964143721RH607176376.84  6557.701 AL138742, AL590071
S/G/Y/R/B/O NT_023399AL138742964144061RH358736376.84    1 AL138742, AL590071
S/G/Y/R/B/O NT_023399AL138742964170661RH185426376.34    1 AL138742, AL590071
S/G/Y/R/B/O NT_023399AL138728965244033          
S/G/Y/R/B/O NT_023399AL391815965513023          
S/G/Y/R/B/O NT_023399AL049550966623703WI-3308    6559.901 AL049550


  NT_023399 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023399AL137010967169703          
S/G/Y/R/B/O NT_023399AL590823967463823          
S/G/Y/R/B/O NT_023399AL445932967754623          
S/G/Y/R/B/O NT_023399AL590143970004033RH476346370.55    1 AL158814, AL590143
S/G/Y/R/B/O NT_023399AL035694970221863RH1031066375.33    1 AL035694, AL158814
S/G/Y/R/B/O NT_023399AL035694970270083WI-4078    6554.001 AL035694, AL158814
S/G/Y/R/B/O NT_023399AL109941971642653RH421986376.44    1 AL109941
S/G/Y/R/B/O NT_023399AL136312972632833          
S/G/Y/R/B/O NT_023399AL136095973192113          
S/G/Y/R/B/O NT_023399AL139806973692443          
S/G/Y/R/B/O NT_023399AL122016974637733          
S/G/Y/R/B/O NT_023399AL135903975768463RH160666374.23    2AC016855, AC016855, AL135903, AL353758
S/G/Y/R/B/O NT_023399AL135903975769583RH257856370.59    2AC012342, AC018850, AC078868, AC012057, AC012342, AC018850, AC078868
S/G/Y/R/B/O NT_023399AL135903977413823RH990036384.23    1 AL135903
S/G/Y/R/B/O NT_023399AL589666977834623RH612276382.12  6562.801 AL589666
S/G/Y/R/B/O NT_023399AL589666977834653RH1871  64048.00  1 AL589666
S/G/Y/R/B/O NT_023399AL589666977848323RH410396370.80    1 AL589666
S/G/Y/R/B/O NT_023399AL589666977850873RH467106382.29    1 AL589666
S/G/Y/R/B/O NT_023399AL589666977872633RH609616378.37  6550.401 AL589666
S/G/Y/R/B/O NT_023399AL589666977872713RH466486382.93    1 AL589666
S/G/Y/R/B/O NT_023399AL589666977952193RH792596370.59    1 AL589666
S/G/Y/R/B/O NT_023399AL589666977976303RH38256  64044.00  1 AL589666
S/G/Y/R/B/O NT_023399AL136082978885443RH481536379.40    1 AL136082
S/G/Y/R/B/O NT_023399AL136082978973983RH921226370.70    1 AL136082
S/G/Y/R/B/O NT_023399AL136082978979063RH781356379.40    1 AL136082
S/G/Y/R/B/O NT_023399AL136082979038103RH609266378.25  6550.501 AL136082
S/G/Y/R/B/O NT_023399AL136082979038103RH1210  64044.00  1 AL136082
S/G/Y/R/B/O NT_023399AL136082979039343RH785606378.77    1 AL136082
S/G/Y/R/B/O NT_023399AL355615979493213RH271326379.08    1 AL355615
S/G/Y/R/B/O NT_023399AL355615979503913RH468156373.30    1 AL355615
S/G/Y/R/B/O NT_023399AL355615979620833RH666306378.56    1AC104209, Z99916, AC104209, AL355615, Z99916
S/G/Y/R/B/O NT_023399AL355615979667893RH468596380.94    1 AB017710, AL355615
S/G/Y/R/B/O NT_023399AL355615979667903RH606796370.66  6562.301 AB017710, AL355615
S/G/Y/R/B/O NT_023399AL450338981247593          
S/G/Y/R/B/O NT_023399AL356601982738753          
S/G/Y/R/B/O NT_023399AL049545983649473          
S/G/Y/R/B/O NT_023399AL355354984689283          
S/G/Y/R/B/O NT_023399AL603964985218223          
S/G/Y/R/B/O NT_023399AL390125985468083          
S/G/Y/R/B/O NT_023399AL391417986855913          
S/G/Y/R/B/O NT_023399AL357272987749463          
S/G/Y/R/B/O NT_023399AL365189988677753          
S/G/Y/R/B/O NT_023399AL353133989718503WI-3178    6565.903AC108119, AC108119, AC109460, AL139126, AL353133
S/G/Y/R/B/O NT_023399AL512327990906363          
S/G/Y/R/B/O NT_023399AL121717991000773          
S/G/Y/R/B/O NT_023399AL157777992062243AFM342XF9    6566.501 AL157777
S/G/Y/R/B/O NT_023399AL157777992418693AFM296TF1    6565.801 AL157777
S/G/Y/R/B/O NT_023399AL157777993058913RH607026384.23    1 AL157777
S/G/Y/R/B/O NT_023399AL157777993058913WI-18995    6586.201 AL157777
S/G/Y/R/B/O NT_023399AL157777993058943RH7870  64060.00  1 AL157777


  NT_023399 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023399AL157777993059293RH466966382.65    1 AL157777
S/G/Y/R/B/O NT_023399AL138827993749653RH8620  64148.00  1 AL138827
S/G/Y/R/B/O NT_023399AL139274994421533RH683506384.17    1 AL139274
S/G/Y/R/B/O NT_023399AL139274994422043RH639736381.91  6568.501 AL139274
S/G/Y/R/B/O NT_023399AL139274994483573RH284306383.25    1 AL139274
S/G/Y/R/B/O NT_023399AL139274994741323RH665986384.66    1 AL139274
S/G/Y/R/B/O NT_023399AL139274994745443RH606086384.66    1 AL139274
S/G/Y/R/B/O NT_023399AL139274994745443WI-18053    6585.001 AL139274
S/G/Y/R/B/O NT_023399AL139274995258763RH365856383.25    1 AC005069, AL137180, AL139274
S/G/Y/R/B/O NT_023399AL139274995478183RH42816  64064.00  1 AC005069, AL137180, AL139274
S/G/Y/R/B/O NT_023399AL139274995502533RH409326384.88    1 AC005069, AL137180, AL139274
S/G/Y/R/B/O NT_023399AL139274995517203RH32547  64069.00  1 AC005069, AL137180, AL139274
S/G/Y/R/B/O NT_023399AL139274995527313RH373116385.30    1 AC005069, AL139274
S/G/Y/R/B/O NT_023399AL139274995527313RH1983  64157.00  1 AC005069, AL139274
S/G/Y/R/B/O NT_023399AL139274995530013RH928436386.98    1 AC005069, AL139274
S/G/Y/R/B/O NT_023399AL160258995727023          
S/G/Y/R/B/O NT_023399AL096817996035213WI-4702    6578.701 AL096817, AL137180
S/G/Y/R/B/O NT_023399AL096817996297393RH478816383.90    1 AL096817, AL137180
S/G/Y/R/B/O NT_023399AL096817996308703RH1025796384.93    1 AL096817, AL137180
S/G/Y/R/B/O NT_023399AL096817996314583RH409076384.55    1 AL096817, AL137180
S/G/Y/R/B/O NT_023399AC021687996912251          
S/G/Y/R/B/O NT_023399 - RH1019196371.63    0  
S/G/Y/R/B/O NT_023399 - RH14739  64046.00  1AL445189, AL158137, AL445189
S/G/Y/R/B/O NT_023399 - RH1027206367.68    0AL049696, AL049696, AL138732
S/G/Y/R/B/O NT_023399 - RH37862  64046.00  1AL391646, AL391646
S/G/Y/R/B/O NT_023399 - RH606666373.62  6537.500  
S/G/Y/R/B/O NT_023399 - RH456976368.33    0AL078599, AL078599, AL136316
S/G/Y/R/B/O NT_023399 - RH611486367.96  6560.500AL049696, AL049696, AL138732
S/G/Y/R/B/O NT_023399 - RH98076363.05    0  
S/G/Y/R/B/O NT_023399 - AFMB354XG1    6565.701 AC109460, AL139126
S/G/Y/R/B/O NT_023399 - RH781366382.44    0  
S/G/Y/R/B/O NT_023399 - RH786236335.23    0