Chromosome 6 - RH Maps - Single Contig

Chromosome 6 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033125	NT_033164	NT_033126	NT_033128	NT_033144	NT_033156	NT_033142	NT_033120
NT_033135	NT_033151	NT_033162	NT_033163	NT_033143	NT_033124	NT_033129	NT_033138
NT_033159	NT_026313	NT_033155	NT_033173	NT_033140	NT_033153	NT_023442	NT_033146
NT_033136	NT_033149	NT_033154	NT_033160	NT_033134	NT_029317	NT_007592	NT_033137
NT_033139	NT_033147	NT_033158	NT_033161	NT_033145	NT_033141	NT_033123	NT_033130
NT_033127	NT_033122	NT_033152	NT_033121	NT_033148	NT_033171	NT_033132	NT_033943
NT_033172	NT_033948	NT_033131	NT_033946	NT_007540	NT_023463	NT_007158	NT_029990
NT_023399	NT_033133	NT_007299	NT_019424	NT_007563	NT_033944	NT_033947	NT_030710
NT_025741	NT_027046	NT_023451	NT_029991	NT_007422	NT_007302	NT_007627	NT_007583

NT_030710

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_030710	AL645641	135412058	3
S/G/Y/R/B/O	NT_030710	AL591428	135508262	3	AFM342XC1					6	727.30	1	AL591428
S/G/Y/R/B/O	NT_030710	AL603902	135681277	3	RH60765	6	505.02			6	728.30	1	AL603902
S/G/Y/R/B/O	NT_030710	AL603902	135681277	3	RH37739			6	5364.00			1	AL603902
S/G/Y/R/B/O	NT_030710	AL603902	135681831	3	RH9802	6	502.97					1	AL603902
S/G/Y/R/B/O	NT_030710	AL603902	135735441	3	WI-11154					6	728.20	1	AC011058, AL603902
S/G/Y/R/B/O	NT_030710	AL603911	135740274	3
S/G/Y/R/B/O	NT_030710	AL357352	135774068	3
S/G/Y/R/B/O	NT_030710	AL445259	135965353	3	RH102304	6	504.30					1	AL445259
S/G/Y/R/B/O	NT_030710	AL133257	136091731	3	RH35867	6	504.40					1	AL133257
S/G/Y/R/B/O	NT_030710	AL450351	136143901	3
S/G/Y/R/B/O	NT_030710	AL354936	136167561	3
S/G/Y/R/B/O	NT_030710	AL450343	136329079	3
S/G/Y/R/B/O	NT_030710	AL035692	136368896	3	RH15888	6	502.97					1	AC024506, AL035692
S/G/Y/R/B/O	NT_030710	AL035692	136418413	3	RH41840	6	504.30					1	AC040906, AL035692, AL450349
S/G/Y/R/B/O	NT_030710	AL035692	136424088	3	RH76404	6	504.20					1	AC040906, AL035692, AL450349
S/G/Y/R/B/O	NT_030710	AL512376	136463678	3	RH15825	6	504.30					1	AC040906, AL450349, AL512376
S/G/Y/R/B/O	NT_030710	AL109842	136522203	3	RH61143	6	504.30			6	729.40	1	AC040906, AL109842, AL450349
S/G/Y/R/B/O	NT_030710	AL109842	136522258	3	RH66670	6	504.40					1	AC040906, AL109842, AL450349
S/G/Y/R/B/O	NT_030710	AL136081	136604211	3
S/G/Y/R/B/O	NT_030710	AL451183	136703961	3
S/G/Y/R/B/O	NT_030710	AL121968	136706006	3
S/G/Y/R/B/O	NT_030710	AL136107	136830125	3
S/G/Y/R/B/O	NT_030710	AL451135	136903911	3
S/G/Y/R/B/O	NT_030710	AL356278	137019224	3	RH61069	6	506.82			6	730.40	1	AC018860, AC022269, AL356278
S/G/Y/R/B/O	NT_030710	AL356605	137222866	3	RH30974			6	5431.00			1	AL356605
S/G/Y/R/B/O	NT_030710	AL356605	137241210	3	RH6721	6	506.72			6	729.90	1	AL356605
S/G/Y/R/B/O	NT_030710	AL136224	137288778	3	RH78368	6	506.72					1	AL136224
S/G/Y/R/B/O	NT_030710	AL355296	137332926	3
S/G/Y/R/B/O	NT_030710	AL136128	137548973	3	RH48336	6	574.05					1	AC068681, AL136128
S/G/Y/R/B/O	NT_030710	AL136128	137549346	3	RH61035	6	508.93			6	731.60	1	AC068681, AL136128
S/G/Y/R/B/O	NT_030710	AL136128	137551802	3	RH104065	6	506.62					1	AC068681, AL136128
S/G/Y/R/B/O	NT_030710	AL136128	137555156	3	RH18420	6	509.24					1	AC068681, AL136128
S/G/Y/R/B/O	NT_030710	AL136128	137555794	3	RH8114			6	5450.00			1	AC068681, AL136128
S/G/Y/R/B/O	NT_030710	AL136128	137555819	3	RH25478	6	509.04					1	AC068681, AL136128
S/G/Y/R/B/O	NT_030710	AL121938	137689857	3	RH92693	6	508.93					1	AL121938
S/G/Y/R/B/O	NT_030710	AL121938	137726466	3	RH69653	6	504.61					1	AL121938
S/G/Y/R/B/O	NT_030710	AL121938	137726604	3	RH46614	6	508.93					1	AL121938
S/G/Y/R/B/O	NT_030710	AL121938	137727563	3	RH8816			6	5461.00			1	AL121938
S/G/Y/R/B/O	NT_030710	AL121938	137739323	3	RH61033	6	511.02			6	731.60	1	AL121938
S/G/Y/R/B/O	NT_030710	AL121938	137739371	3	RH46850	6	508.93					1	AL121938
S/G/Y/R/B/O	NT_030710	AL359676	137797765	3
S/G/Y/R/B/O	NT_030710	AL450332	137919829	3	WI-5791					6	731.60	1	AL450332
S/G/Y/R/B/O	NT_030710	AL450332	137932533	3	RH13109	6	508.93	6	5467.00			1	AL450332
S/G/Y/R/B/O	NT_030710	AL365259	138012843	3
S/G/Y/R/B/O	NT_030710	AL389919	138119350	3
S/G/Y/R/B/O	NT_030710	AL078594	138178976	3	WI-4964					6	735.10	1	AL078594
S/G/Y/R/B/O	NT_030710	AL078594	138208029	3	RH40952	6	511.86					1	AL078594
S/G/Y/R/B/O	NT_030710	AL078594	138259259	3	WI-5381					6	733.70	1	AL078594
S/G/Y/R/B/O	NT_030710	AL078594	138301694	3	WI-4080					6	735.10	1	AL078594

NT_030710 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_030710	AL136163	138311212	3
S/G/Y/R/B/O	NT_030710	AL035689	138392070	3	RH46075	6	512.17					1		AL035689
S/G/Y/R/B/O	NT_030710	AL035689	138393022	3	RH64009	6	512.17	6	5467.00	6	735.20	1		AL035689
S/G/Y/R/B/O	NT_030710	AL035689	138394149	3	RH61147	6	513.80			6	736.70	1		AL035689
S/G/Y/R/B/O	NT_030710	AL035689	138394248	3	RH25092	6	511.86					1		AL035689
S/G/Y/R/B/O	NT_030710	AL035689	138394260	3	RH16055	6	512.17					1		AL035689
S/G/Y/R/B/O	NT_030710	AL035689	138441180	3	RH48474	6	511.76					1		AL035689
S/G/Y/R/B/O	NT_030710	AL035689	138473021	3	RH92854	6	511.86					1		AL035689
S/G/Y/R/B/O	NT_030710	AL035689	138478303	3	RH92418	6	511.86					1		AL035689
S/G/Y/R/B/O	NT_030710	AL391115	138534815	3
S/G/Y/R/B/O	NT_030710	AL162580	138566454	3	RH92313	6	512.07					1		AL162580
S/G/Y/R/B/O	NT_030710	AL162580	138570078	3	RH8083			6	5473.00			1		AL162580
S/G/Y/R/B/O	NT_030710	AL162580	138710605	3	CHLC.GATA23E03					6	735.10	1	AC020559,	AC020559, AL162580
S/G/Y/R/B/O	NT_030710	AC020559	138731013	3
S/G/Y/R/B/O	NT_030710	AL356534	138831243	3
S/G/Y/R/B/O	NT_030710	AL450347	139000057	3
S/G/Y/R/B/O	NT_030710	AL359535	139077350	3
S/G/Y/R/B/O	NT_030710	AL137183	139115989	3
S/G/Y/R/B/O	NT_030710	AL035603	139144156	3
S/G/Y/R/B/O	NT_030710	AL390055	139282498	3
S/G/Y/R/B/O	NT_030710	AL354858	139329721	3
S/G/Y/R/B/O	NT_030710	AL590791	139484979	3
S/G/Y/R/B/O	NT_030710	AL031776	139487544	3
S/G/Y/R/B/O	NT_030710	AL590733	139659848	3	RH94253	6	514.01					1		AL590733
S/G/Y/R/B/O	NT_030710	AL109939	139751481	3	RH25193	6	513.52					1		AL109939
S/G/Y/R/B/O	NT_030710	AL109939	139751507	3	RH37898			6	5494.00			1		AL109939
S/G/Y/R/B/O	NT_030710	AL109939	139751591	3	RH15810	6	514.14					1		AL109939
S/G/Y/R/B/O	NT_030710	AL109939	139752115	3	RH81056	6	512.42					1		AL109939
S/G/Y/R/B/O	NT_030710	AL109939	139753408	3	RH45158	6	513.62					1		AL109939
S/G/Y/R/B/O	NT_030710	AL590002	139850236	3	RH61064	6	513.31			6	736.70	1		AL590002, AP002450
S/G/Y/R/B/O	NT_030710	AL590002	139850278	3	RH46802	6	514.14					1		AL590002, AP002450
S/G/Y/R/B/O	NT_030710	AL096711	139901805	3	RH61170	6	514.14	6	5486.00	6	736.70	1		AL096711, AP002450
S/G/Y/R/B/O	NT_030710	AL096711	139901875	3	RH46655	6	513.93					1		AL096711, AP002450
S/G/Y/R/B/O	NT_030710	AL096711	139901888	3	RH36696	6	514.42					1		AL096711, AP002450
S/G/Y/R/B/O	NT_030710	AL096711	139902636	3	RH33341			6	5511.00			1		AL096711, AP002450
S/G/Y/R/B/O	NT_030710	AL096711	139902711	3	RH47312	6	514.14					1		AL096711, AP002450
S/G/Y/R/B/O	NT_030710	AL096711	139905338	3	RH76630	6	512.69					1		AL096711, AP002450
S/G/Y/R/B/O	NT_030710	AL096711	139907193	3	RH65429	6	514.42					1		AL096711, AP002450
S/G/Y/R/B/O	NT_030710	AL096711	139935778	3	RH37401	6	514.42					1		AL096711
S/G/Y/R/B/O	NT_030710	AL096711	139974019	3	RH61190	6	514.14			6	733.90	1		AL096711
S/G/Y/R/B/O	NT_030710	AL096711	139974127	3	RH46738	6	513.93					1		AL096711
S/G/Y/R/B/O	NT_030710	AL583806	139981116	3
S/G/Y/R/B/O	NT_030710	AL592291	140095116	3
S/G/Y/R/B/O	NT_030710	AL356432	140120007	3	RH47416	3	662.92					3	AC023235,	AC016986, AC023235, AL356432
S/G/Y/R/B/O	NT_030710	AL356432	140122110	3	RH65544	3	680.78					3	AC023235,	AC023235
S/G/Y/R/B/O	NT_030710	AL356432	140171747	3	RH93059	6	514.14					2		AC016986, AL356432
S/G/Y/R/B/O	NT_030710	AL356432	140260658	3	WI-10674					6	736.70	1	AC016532,	AC016532, AL354894, AL356432
S/G/Y/R/B/O	NT_030710	AL365224	140301233	3	RH37468	6	513.62					1	AC016532,	AC016532, AL354894, AL365224
S/G/Y/R/B/O	NT_030710	AL035470	140432186	3	RH60972	6	514.14			6	736.70	1		AL035470
S/G/Y/R/B/O	NT_030710	AL035470	140432186	3	RH61099	6	513.80			6	736.70	1		AL035470

NT_030710 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_030710	AL035470	140432232	3	RH46580	6	514.42			1		AL035470
S/G/Y/R/B/O	NT_030710	AC016532	140432875	1
S/G/Y/R/B/O	NT_030710		-		RH37405	6	514.42			0	AL450347,	AL450347
S/G/Y/R/B/O	NT_030710		-		RH61009	6	506.82	6	730.40	0
S/G/Y/R/B/O	NT_030710		-		RH92981	6	511.02			0