Chromosome 6 - RH Maps - Single Contig

Chromosome 6 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033125	NT_033164	NT_033126	NT_033128	NT_033144	NT_033156	NT_033142	NT_033120
NT_033135	NT_033151	NT_033162	NT_033163	NT_033143	NT_033124	NT_033129	NT_033138
NT_033159	NT_026313	NT_033155	NT_033173	NT_033140	NT_033153	NT_023442	NT_033146
NT_033136	NT_033149	NT_033154	NT_033160	NT_033134	NT_029317	NT_007592	NT_033137
NT_033139	NT_033147	NT_033158	NT_033161	NT_033145	NT_033141	NT_033123	NT_033130
NT_033127	NT_033122	NT_033152	NT_033121	NT_033148	NT_033171	NT_033132	NT_033943
NT_033172	NT_033948	NT_033131	NT_033946	NT_007540	NT_023463	NT_007158	NT_029990
NT_023399	NT_033133	NT_007299	NT_019424	NT_007563	NT_033944	NT_033947	NT_030710
NT_025741	NT_027046	NT_023451	NT_029991	NT_007422	NT_007302	NT_007627	NT_007583

NT_007422

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_007422	AC010893	173003368	1
S/G/Y/R/B/O	NT_007422	AL596089	173075422	1	RH13174	6	624.38					1		AL596089
S/G/Y/R/B/O	NT_007422	AL596089	173088152	1	RH14745			6	6678.00			5		AC040907, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, L14005
S/G/Y/R/B/O	NT_007422	AL596089	173095551	1	RH60719	6	628.68			6	837.30	2		AL596089, AL596089
S/G/Y/R/B/O	NT_007422	AL596089	173095586	1	RH46777	6	625.99					3		AC040907, AL596089, AL596089, AL596089, AL596089
S/G/Y/R/B/O	NT_007422	AL596089	173099246	1	RH14745			6	6678.00			5		AC040907, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, L14005
S/G/Y/R/B/O	NT_007422	AL596089	173104800	1	RH14745			6	6678.00			5		AC040907, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, L14005
S/G/Y/R/B/O	NT_007422	AL596089	173110346	1	RH14745			6	6678.00			5		AC040907, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, L14005
S/G/Y/R/B/O	NT_007422	AL596089	173112232	1	RH46777	6	625.99					3		AC040907, AL596089, AL596089, AL596089, AL596089
S/G/Y/R/B/O	NT_007422	AL596089	173115890	1	RH14745			6	6678.00			5		AC040907, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, AL596089, L14005
S/G/Y/R/B/O	NT_007422	AL596089	173117760	1	RH60719	6	628.68			6	837.30	2		AL596089, AL596089
S/G/Y/R/B/O	NT_007422	AL596089	173117777	1	RH46777	6	625.99					3		AC040907, AL596089, AL596089, AL596089, AL596089
S/G/Y/R/B/O	NT_007422	AL596089	179900681	1	WI-7526					6	832.20	1		AL596089, AL645523
S/G/Y/R/B/O	NT_007422	AL596089	179900681	1	RH61116	6	622.06					1		AL596089, AL645523
S/G/Y/R/B/O	NT_007422	AL596089	179900682	1	RH41031	6	620.83					3		AL596089, AL645523
S/G/Y/R/B/O	NT_007422	AL109933	173132771	3	WI-7462					6	833.50	1	AC010893,	AC010893, AL109933
S/G/Y/R/B/O	NT_007422	AL109933	173165588	3	RH56923	2	312.83			2	390.00	2	AC064810, AC093616,	AC064810, AC093616
S/G/Y/R/B/O	NT_007422	AL109933	173185821	3	RH26369	2	318.23					4	AC009963, AC010893, AC064810, AC093616, AC097527, AC109354, AC114755,	AC009963, AC010893, AC064810, AC093616, AC097527, AC109354, AC111200, AC114755
S/G/Y/R/B/O	NT_007422	AL109933	173188445	3	RH69724	6	628.21					1	AC010893,	AC010893, AL109933
S/G/Y/R/B/O	NT_007422	AL109933	173188456	3	RH60900	6	626.50			6	833.70	1	AC010893,	AC010893, AL109933
S/G/Y/R/B/O	NT_007422	AL109933	173204080	3	RH32807			6	6678.00			1	AC010893,	AC010893, AL109933
S/G/Y/R/B/O	NT_007422	AL109933	173205416	3	RH70350	6	628.21					1	AC010893,	AC010893, AL109933
S/G/Y/R/B/O	NT_007422	AL109933	173205416	3	RH32746			6	6678.00			1	AC010893,	AC010893, AL109933
S/G/Y/R/B/O	NT_007422	AL109933	173206926	3	RH67441	6	620.83					1	AC010893,	AC010893, AL109933
S/G/Y/R/B/O	NT_007422	AL109933	173225394	3	RH15789	6	624.28					2	AC010893, AL591069,	AC010893, AC040893, AL109933, AL591069, AL645523
S/G/Y/R/B/O	NT_007422	AL109933	173225400	3	RH41031	6	620.83					3	AL596089,	AL596089, AL645523
S/G/Y/R/B/O	NT_007422	AL109933	173226183	3	RH7924			6	6657.00			1	AC010893,	AC010893, AL109933
S/G/Y/R/B/O	NT_007422	AL391663	173285972	3
S/G/Y/R/B/O	NT_007422	AL391361	173390773	3	RH68806	6	628.21					1		AC015984, AL391361
S/G/Y/R/B/O	NT_007422	AL139393	173462677	3	RH60638	6	626.71			6	833.40	1		AC015984, AL139393
S/G/Y/R/B/O	NT_007422	AL139393	173462704	3	RH46702	6	626.50					1		AC015984, AL139393
S/G/Y/R/B/O	NT_007422	AL139393	173483231	3	RH60667	6	626.71			6	833.80	1		AC015984, AC073146, AL139393
S/G/Y/R/B/O	NT_007422	AL139393	173483256	3	RH46673	6	626.50					1		AC015984, AC073146, AL139393
S/G/Y/R/B/O	NT_007422	AL596452	173490804	3
S/G/Y/R/B/O	NT_007422	AL591045	173558486	3
S/G/Y/R/B/O	NT_007422	AL109942	173589437	3	RH25424	6	628.16					1		AC073146, AL109942
S/G/Y/R/B/O	NT_007422	AL109942	173589492	3	RH40842	6	628.06					1		AC073146, AL109942
S/G/Y/R/B/O	NT_007422	AL109942	173589492	3	RH46613	6	626.50					1		AC073146, AL109942
S/G/Y/R/B/O	NT_007422	AL109942	173608411	3	RH60721	6	628.21			6	833.80	1		AC073146, AL109942
S/G/Y/R/B/O	NT_007422	AL109942	173608493	3	RH46750	6	626.50					1		AC073146, AL109942
S/G/Y/R/B/O	NT_007422	AL132982	173774284	3	RH37585	6	636.47					1		AL132982
S/G/Y/R/B/O	NT_007422	AL445215	173847794	3
S/G/Y/R/B/O	NT_007422	AL138716	173904387	3
S/G/Y/R/B/O	NT_007422	AL035697	174070113	3	AFMA155TD9					6	835.60	1		AL035697
S/G/Y/R/B/O	NT_007422	AL035697	174082743	3	RH483			6	6715.00			1		AL035697
S/G/Y/R/B/O	NT_007422	AL078583	174094286	3
S/G/Y/R/B/O	NT_007422	AP003699	174224135	3	RH63720	6	635.19			6	835.60	1		AP003699
S/G/Y/R/B/O	NT_007422	AP003699	174246482	3	RH13135	6	628.21					1	AP000886,	AP000886, AP003699
S/G/Y/R/B/O	NT_007422	AP003699	174246482	3	RH898			6	6722.00			1	AP000886,	AP000886, AP003699
S/G/Y/R/B/O	NT_007422	AP000886	174290202	3

NT_007422 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_007422	AP002091	174462557	3
S/G/Y/R/B/O	NT_007422	AP001577	174529361	3	RH45460	6	635.19					1		AP001577
S/G/Y/R/B/O	NT_007422	AP001578	174700115	3	WI-6140					6	835.60	1		AP001578
S/G/Y/R/B/O	NT_007422	AP001578	174778282	3	RH61234	6	628.21			6	841.00	1		AP001578
S/G/Y/R/B/O	NT_007422	AP001578	174789951	3	RH37467	6	628.21					1		AP001578
S/G/Y/R/B/O	NT_007422	AL008631	174841420	3
S/G/Y/R/B/O	NT_007422	AP000887	174935056	3
S/G/Y/R/B/O	NT_007422	AP000888	175091182	3	RH37445	6	629.82					1		AL391833, AP000888
S/G/Y/R/B/O	NT_007422	AP001576	175120547	3
S/G/Y/R/B/O	NT_007422	AL603788	175201338	3
S/G/Y/R/B/O	NT_007422	AL354942	175376958	3	WI-7490					6	835.60	2	AC058815,	AC058815, AL354942
S/G/Y/R/B/O	NT_007422	AL590286	175425436	3
S/G/Y/R/B/O	NT_007422	AL137182	175489192	3
S/G/Y/R/B/O	NT_007422	AL078585	175654096	3	RH16114	6	636.42					1		AL078585
S/G/Y/R/B/O	NT_007422	AL078585	175655048	3	RH17156	6	635.29					1		AL078585, AL139043
S/G/Y/R/B/O	NT_007422	AL078585	175669074	3	CHLC.GATA31F06					6	840.90	1		AL078585
S/G/Y/R/B/O	NT_007422	AL031121	175787213	3	RH93900	6	628.21					1		AL031121
S/G/Y/R/B/O	NT_007422	AL031121	175806692	3	RH37460	6	636.42					1		AL031121
S/G/Y/R/B/O	NT_007422	AL031121	175840641	3	RH63999	6	630.02			6	838.30	1		AL031121
S/G/Y/R/B/O	NT_007422	AL031121	175840716	3	RH18506	6	629.92					1		AL031121
S/G/Y/R/B/O	NT_007422	AL356119	175889031	3	RH41968	6	628.37					1		AL133542, AL136229, AL356119
S/G/Y/R/B/O	NT_007422	AL356119	175890829	3	RH35872	6	630.02					1		AL133542, AL136229, AL356119
S/G/Y/R/B/O	NT_007422	AL356119	175922787	3	RH60580	6	629.92			6	837.20	1		AL133542, AL136229, AL356119
S/G/Y/R/B/O	NT_007422	AL031781	175980100	3	RH60950	6	628.21			6	832.40	1		AL031781
S/G/Y/R/B/O	NT_007422	AL031781	176028409	3	RH77886	6	629.92					1		AL031781
S/G/Y/R/B/O	NT_007422	AL031781	176039393	3	RH103867	6	636.42					1		AB067808, AL031781
S/G/Y/R/B/O	NT_007422	AL031781	176041883	3	RH15845	6	209.44					1		AB067808, AL031781
S/G/Y/R/B/O	NT_007422	AL031781	176045089	3	RH16086	6	630.02					1		AB067809
S/G/Y/R/B/O	NT_007422	AL031781	176048765	3	RH92592	6	628.21					1		AL031781
S/G/Y/R/B/O	NT_007422	AL031781	176049232	3	RH17287	6	629.92					1		AL031781
S/G/Y/R/B/O	NT_007422	AL031781	176050508	3	RH60862	6	629.82			6	837.20	1		AL031781
S/G/Y/R/B/O	NT_007422	AL031781	176050661	3	RH26251	6	628.06					1		AL031781
S/G/Y/R/B/O	NT_007422	AL445307	176055236	3
S/G/Y/R/B/O	NT_007422	AL136314	176136728	3	RH104157	6	631.84					1		AL136314
S/G/Y/R/B/O	NT_007422	AL137005	176199925	3	WI-4442					6	837.60	1		AL137005
S/G/Y/R/B/O	NT_007422	AL137005	176242022	3	RH37579	6	633.55					1		AL137005
S/G/Y/R/B/O	NT_007422	AL451128	176273650	3
S/G/Y/R/B/O	NT_007422	AL078602	176285599	3	WI-3272					6	837.60	1		AL078602
S/G/Y/R/B/O	NT_007422	AL078602	176311931	3	WI-5482					6	837.60	1		AL078602
S/G/Y/R/B/O	NT_007422	AL078602	176349026	3	CHLC.GATA81B01					6	837.60	1		AL078602
S/G/Y/R/B/O	NT_007422	AL136225	176458133	3	RH8823			6	5861.00			1		AC012266, AL136225
S/G/Y/R/B/O	NT_007422	AL136225	176458238	3	RH46804	6	633.55					1		AC012266, AL136225
S/G/Y/R/B/O	NT_007422	AL118518	176470113	3
S/G/Y/R/B/O	NT_007422	Z97205	176596514	3	WI-9814					6	843.60	1		AC012266, Z97205
S/G/Y/R/B/O	NT_007422	Z97205	176655883	3	RH104194	6	631.84					1		Z97205
S/G/Y/R/B/O	NT_007422	AL139190	176686733	3
S/G/Y/R/B/O	NT_007422	AL358972	176902365	3	WI-4707					6	843.60	1		AC067909, AL358972
S/G/Y/R/B/O	NT_007422	AL589952	176930014	3	RH16137	6	629.92					1		AC067909, AL589952
S/G/Y/R/B/O	NT_007422	AL513023	176948051	3
S/G/Y/R/B/O	NT_007422	AL589727	177135419	3	WI-3718					6	843.60	1		AL589727

NT_007422 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	All Accessions
S/G/Y/R/B/O	NT_007422	AL596175	177189889	3
S/G/Y/R/B/O	NT_007422	AL450345	177296772	1	RH36770	6	631.84					1	AL450345
S/G/Y/R/B/O	NT_007422	AL133538	177376013	3
S/G/Y/R/B/O	NT_007422	AL023579	177485151	3
S/G/Y/R/B/O	NT_007422	AL136100	177555386	3
S/G/Y/R/B/O	NT_007422	AL356125	177727498	3
S/G/Y/R/B/O	NT_007422	AL117345	177792467	3	RH102256	6	631.84					1	AL117345, AL354818
S/G/Y/R/B/O	NT_007422	AL136130	177902698	3
S/G/Y/R/B/O	NT_007422	AL160160	177972272	3
S/G/Y/R/B/O	NT_007422	AL121789	178090800	3	RH37465	6	636.79					1
S/G/Y/R/B/O	NT_007422	AL121789	178098739	3	RH15826	6	631.84					1	AL121789
S/G/Y/R/B/O	NT_007422	AL121789	178120968	3	RH13112	6	631.84					1	AL121789
S/G/Y/R/B/O	NT_007422	AL591962	178133655	3
S/G/Y/R/B/O	NT_007422	AL590302	178279113	3	RH38126			6	6829.00			1	AC025484, AL590302
S/G/Y/R/B/O	NT_007422	AL590302	178279192	3	RH61049	6	631.94			6	838.20	1	AC025484, AL590302
S/G/Y/R/B/O	NT_007422	AL590482	178404417	3	RH102444	6	633.55					1	AC012425, AC044855, AC069378, AL590482
S/G/Y/R/B/O	NT_007422	AL132661	178417681	3
S/G/Y/R/B/O	NT_007422	AL627443	178524540	3
S/G/Y/R/B/O	NT_007422	AL121956	178760422	3	RH13228	6	638.50	6	6818.00			1	AL121956
S/G/Y/R/B/O	NT_007422	AL022069	178829633	3	RH13825			6	6838.00			1	AL022069
S/G/Y/R/B/O	NT_007422	AL022069	178829667	3	RH40818	6	636.17					1	AL022069
S/G/Y/R/B/O	NT_007422	AL022069	178834548	3	RH40866	6	635.23					1	AL022069
S/G/Y/R/B/O	NT_007422	AL022069	178840401	3	RH91291	6	635.23					1	AL022069
S/G/Y/R/B/O	NT_007422	AL022069	178845775	3	RH75217	6	635.54					1	AL022069
S/G/Y/R/B/O	NT_007422	AL022069	178851500	3	RH98474	6	635.23					1	AL022069
S/G/Y/R/B/O	NT_007422	AL022069	178874132	3	RH76724	6	638.08					1	AL022069
S/G/Y/R/B/O	NT_007422	AL022069	178874238	3	RH45609	6	635.23					1	AL022069
S/G/Y/R/B/O	NT_007422	AL022069	178874526	3	RH60695	6	636.52			6	848.40	1	AL022069
S/G/Y/R/B/O	NT_007422	AL022069	178875930	3	RH61163	6	633.87			6	844.00	1	AL022069
S/G/Y/R/B/O	NT_007422	AL022069	178875960	3	RH68171	6	630.13					1	AL022069
S/G/Y/R/B/O	NT_007422	AL022069	178875992	3	RH10681	6	633.87					1	AL022069
S/G/Y/R/B/O	NT_007422	Z98049	178981615	3
S/G/Y/R/B/O	NT_007422	AL023775	179161566	3	RH13175	6	640.50					1	AL023775
S/G/Y/R/B/O	NT_007422	AL159163	179287908	3	D6S297					6	859.20	1	AF019664, AL159163
S/G/Y/R/B/O	NT_007422	AL159163	179393168	3	RH60772	6	630.13			6	845.00	1	AL159163
S/G/Y/R/B/O	NT_007422	AL159163	179394232	3	RH64002	6	635.23	6	6918.00			1	AL159163
S/G/Y/R/B/O	NT_007422	AL159163	179394232	3	SGC32979					6	863.20	1	AL159163
S/G/Y/R/B/O	NT_007422	AL159163	179394341	3	RH26397	6	630.13					1	AL159163
S/G/Y/R/B/O	NT_007422	AL133458	179402710	3	RH60778	6	635.23			6	845.00	1	AL133458
S/G/Y/R/B/O	NT_007422	AL133458	179402842	3	RH12526	6	636.47					1	AL133458
S/G/Y/R/B/O	NT_007422	Z94721	179436730	3	RH76611	6	636.68					1	Z94721
S/G/Y/R/B/O	NT_007422	Z94721	179437466	3	RH48426	6	630.13					1	Z94721
S/G/Y/R/B/O	NT_007422	Z94721	179448356	3	RH60737	6	636.79					1	Z94721
S/G/Y/R/B/O	NT_007422	Z94721	179448356	3	WI-17826					6	852.70	1	Z94721
S/G/Y/R/B/O	NT_007422	Z94721	179448430	3	RH46774	6	630.02					1	Z94721
S/G/Y/R/B/O	NT_007422	Z94721	179457551	3	RH27108	6	630.13					1	Z94721
S/G/Y/R/B/O	NT_007422	Z94721	179457585	3	RH45516	6	636.79					1	Z94721
S/G/Y/R/B/O	NT_007422	Z94721	179504771	3	RH40948	6	636.79					1	Z94721
S/G/Y/R/B/O	NT_007422	Z94721	179504948	3	RH102124	6	630.13					1	Z94721
S/G/Y/R/B/O	NT_007422	Z94721	179517191	3	RH14257			6	6923.00			1	Z94721

NT_007422 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_007422	Z94721	179517277	3	RH46811	6	630.13					1		Z94721
S/G/Y/R/B/O	NT_007422	AL121935	179602070	3	RH75912	6	636.73					1		AL121935, AL353591, U45984
S/G/Y/R/B/O	NT_007422	AL121935	179602074	3	RH70644	6	636.79					1		AL121935, AL353591, U45984
S/G/Y/R/B/O	NT_007422	AL121935	179602171	3	RH46835	6	630.13					1		AL121935, AL353591, U45984
S/G/Y/R/B/O	NT_007422	AL121935	179629275	3	RH63969	6	635.23	6	6892.00	6	848.30	1		AL121935, AL353591
S/G/Y/R/B/O	NT_007422	AL353747	179672882	3	RH46854	6	635.23					2	AL021331,	AL021331, AL353591, AL353747
S/G/Y/R/B/O	NT_007422	AL353747	179672936	3	RH26421	6	635.23					2	AL021331,	AL021331, AL353591, AL353747
S/G/Y/R/B/O	NT_007422	AL021331	179768237	3	WI-3110					6	846.80	1		AL021331
S/G/Y/R/B/O	NT_007422	AL021331	179780445	3	RH46854	6	635.23					2	AL353747,	AL021331, AL353591, AL353747
S/G/Y/R/B/O	NT_007422	AL021331	179780455	3	RH26421	6	635.23					2	AL353747,	AL021331, AL353591, AL353747
S/G/Y/R/B/O	NT_007422	AL021331	179804705	3	RH91835	6	638.68					1		AL021331
S/G/Y/R/B/O	NT_007422	AL021331	179821886	3	RH41017	6	635.23					1		AL021331
S/G/Y/R/B/O	NT_007422	AL021331	179822346	3	RH1830			6	6899.00			1		AL021331
S/G/Y/R/B/O	NT_007422	AL592444	179824881	3
S/G/Y/R/B/O	NT_007422		-		RH15792	6	630.02					1	AL121969, AL590363,	AC021133, AC021133, AC021133, AL121969, AL590363
S/G/Y/R/B/O	NT_007422		-		WI-5094					6	838.90	1	AC022322, AC024253, AL162582,	AC022322, AC024253, AL162582, AL645523
S/G/Y/R/B/O	NT_007422		-		RH46662	6	629.92					0	AL031781,	AL031781
S/G/Y/R/B/O	NT_007422		-		SGC36937					6	848.40	1	AL031259, AL672310,	AL031259, AL672310
S/G/Y/R/B/O	NT_007422		-		RH46778	6	625.99					0
S/G/Y/R/B/O	NT_007422		-		RH46839	6	630.02					0
S/G/Y/R/B/O	NT_007422		-		RH77869	6	630.02					0