Home    Genome Browser    BLAT Search    Help
  Chromosome 6 - RH Maps - Single Contig
 

Chromosome 6 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033125 NT_033164 NT_033126 NT_033128 NT_033144 NT_033156 NT_033142 NT_033120
NT_033135 NT_033151 NT_033162 NT_033163 NT_033143 NT_033124 NT_033129 NT_033138
NT_033159 NT_026313 NT_033155 NT_033173 NT_033140 NT_033153 NT_023442 NT_033146
NT_033136 NT_033149 NT_033154 NT_033160 NT_033134 NT_029317 NT_007592 NT_033137
NT_033139 NT_033147 NT_033158 NT_033161 NT_033145 NT_033141 NT_033123 NT_033130
NT_033127 NT_033122 NT_033152 NT_033121 NT_033148 NT_033171 NT_033132 NT_033943
NT_033172 NT_033948 NT_033131 NT_033946 NT_007540 NT_023463 NT_007158 NT_029990
NT_023399 NT_033133 NT_007299 NT_019424 NT_007563 NT_033944 NT_033947 NT_030710
NT_025741 NT_027046 NT_023451 NT_029991 NT_007422 NT_007302 NT_007627 NT_007583


  NT_007299
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007299AL049697999539173RH640006386.98  6568.601 AL049697
S/G/Y/R/B/O NT_007299AL0496971000111243RH931366386.98    1 AL049697
S/G/Y/R/B/O NT_007299AL0496971000258613RH606456383.25    1 AL049697
S/G/Y/R/B/O NT_007299AL0496971000258613SGC35202    6567.801 AL049697
S/G/Y/R/B/O NT_007299AL0496971000589353RH127646386.98    1 AL049697
S/G/Y/R/B/O NT_007299AL0496971000590243RH409806384.88    1 AL049697
S/G/Y/R/B/O NT_007299AL0496971000590643RH661706383.30    1 AL049697
S/G/Y/R/B/O NT_007299AL0496971000654583RH767586383.95    1 AL049697
S/G/Y/R/B/O NT_007299AL4511261000954603RH611016383.30  6569.201 AL451126
S/G/Y/R/B/O NT_007299AL1332111002140103RH688566384.01    1 AL133211
S/G/Y/R/B/O NT_007299AL3569701002786823          
S/G/Y/R/B/O NT_007299AL1389191003316663          
S/G/Y/R/B/O NT_007299AL5903921004041013          
S/G/Y/R/B/O NT_007299AL1219421005061123          
S/G/Y/R/B/O NT_007299AL1387231005880213          
S/G/Y/R/B/O NT_007299AL1360961006867943RH608216383.90  6569.701 AL136096, U73304
S/G/Y/R/B/O NT_007299AL1360961006884673WI-9825    6577.601 AL136096, U73304
S/G/Y/R/B/O NT_007299AL1360961006901703RH607546387.1964091.006586.301 AL136096, U73304
S/G/Y/R/B/O NT_007299AL1360961006902403RH791686389.88    1 AL136096, U73304
S/G/Y/R/B/O NT_007299AL1360961006908693RH708376385.58    1 AL136096, U73304
S/G/Y/R/B/O NT_007299AL1218351007037153          
S/G/Y/R/B/O NT_007299AL1390421008203063          
S/G/Y/R/B/O NT_007299AL1387191009279513          
S/G/Y/R/B/O NT_007299AL1390901010172023RH640136387.1964086.006586.101 AL139090
S/G/Y/R/B/O NT_007299AL1390901010499803AFMB298ZG9    6582.201 AL139090
S/G/Y/R/B/O NT_007299AL1390901010526513WI-3369    6573.401 AL139090
S/G/Y/R/B/O NT_007299AL1357791010564133          
S/G/Y/R/B/O NT_007299AL1334081011573123RH160566383.95    1 AC021346, AL133408
S/G/Y/R/B/O NT_007299AL1334081012375513RH454716383.95    1 AC021346
S/G/Y/R/B/O NT_007299AL1604031012489653          
S/G/Y/R/B/O NT_007299AL0968681013078233RH483796384.50    1 AL096868
S/G/Y/R/B/O NT_007299AL4455301014146563          
S/G/Y/R/B/O NT_007299AL0793421015088083RH157776384.55    1 AL079342
S/G/Y/R/B/O NT_007299AL0793421015143233RH4595513282.82    3AL136526, AL079342, AL136526, AL355680
S/G/Y/R/B/O NT_007299AL0793421015650703RH376456392.2164108.00  1 AL079342
S/G/Y/R/B/O NT_007299AL3531351016311493RH762866392.31    1 AL353135
S/G/Y/R/B/O NT_007299AL3531351016311973RH32203  64112.00  1 AL353135
S/G/Y/R/B/O NT_007299AL3531351016316433RH410166390.18    1 AL353135
S/G/Y/R/B/O NT_007299AL3531351016318553RH911196392.21    1 AL353135
S/G/Y/R/B/O NT_007299AL3531351017121783RH786766385.84    1 AL353135
S/G/Y/R/B/O NT_007299AL3531351017244823RH804826388.75    1 AL353135
S/G/Y/R/B/O NT_007299AL3531351017252993RH7859  64131.00  1 AL353135
S/G/Y/R/B/O NT_007299AL3531351017253863RH610776387.61  6591.701 AL353135
S/G/Y/R/B/O NT_007299AL3536591017462143          
S/G/Y/R/B/O NT_007299AL1218331018044463RH611386385.91  6586.701 AL121833
S/G/Y/R/B/O NT_007299AL1218331018044463RH605686387.6164108.006592.201 AL121833
S/G/Y/R/B/O NT_007299AL1218331018736383RH161226392.31    1 AL121833
S/G/Y/R/B/O NT_007299AL1218331018740663RH608286385.69  6569.901 AL121833
S/G/Y/R/B/O NT_007299AL1218331018751743RH475446385.69    1 AL121833
S/G/Y/R/B/O NT_007299AL1218331018759883RH1043156387.29    1 AL121833


  NT_007299 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007299AL1398041018764873          
S/G/Y/R/B/O NT_007299AL1387171019047363RH611676384.55  6569.701 AL132710, AL138717
S/G/Y/R/B/O NT_007299AL1387171019048223RH467046387.61    1 AL132710, AL138717
S/G/Y/R/B/O NT_007299AL1387171019105373RH408746387.82    1 AL132710, AL138717
S/G/Y/R/B/O NT_007299AL1387171019119323RH32395  64188.006590.301 AL132710, AL138717
S/G/Y/R/B/O NT_007299AL1387171019119923RH158416392.21    1 AL132710, AL138717
S/G/Y/R/B/O NT_007299AL1387171019125213RH175466392.31    1 AL132710, AL138717
S/G/Y/R/B/O NT_007299AL1387171019231253AFM185XD10    6590.401 AL132710, AL138717
S/G/Y/R/B/O NT_007299AL1387171019564703RH612016385.84  6569.901 AL132710, AL138717
S/G/Y/R/B/O NT_007299AL1369711020248083RH466656392.21    1 AL132710, AL136971
S/G/Y/R/B/O NT_007299AL1369711020248383RH264646392.21    1 AL132710, AL136971
S/G/Y/R/B/O NT_007299AL1591741021121593RH1041216389.88    1 AL159174
S/G/Y/R/B/O NT_007299AL0966781021660763RH409536394.33    1 AL096678
S/G/Y/R/B/O NT_007299AL0966781021779193RH610516385.80  6593.901 AL096678
S/G/Y/R/B/O NT_007299AL0966781021781223RH467496394.33    1 AL096678
S/G/Y/R/B/O NT_007299AL0966781021790703RH610266384.77  6569.901 AL096678
S/G/Y/R/B/O NT_007299AL0966781021790703RH467556386.12    1 AL096678
S/G/Y/R/B/O NT_007299AL0966781021807113RH408196385.63    1AC093829, AC012582, AC093829, AL096678
S/G/Y/R/B/O NT_007299AL0966781021811263RH38056  64211.00  1 AL096678
S/G/Y/R/B/O NT_007299AL0966781021896583RH38059  64205.00  1 AL096678
S/G/Y/R/B/O NT_007299AL0966781021896963RH258926384.72    1 AL096678
S/G/Y/R/B/O NT_007299AL0966781021897693RH468646394.33    1 AL096678
S/G/Y/R/B/O NT_007299AL0966781022680503RH359206395.89    1 AL096678
S/G/Y/R/B/O NT_007299AL0966781022765933RH991306395.89    1 AL096678
S/G/Y/R/B/O NT_007299AL1588131022979463RH665976408.20    1 AC015708, AL158813
S/G/Y/R/B/O NT_007299AL3536921023627053RH1044521751.68    3AC004066, AC055872, AC004066, AC015708, AC055872, AC093696, AC108936, AL353692, AP001946
S/G/Y/R/B/O NT_007299AL3536921024135243RH408466396.00    1 AC015708, AL353692
S/G/Y/R/B/O NT_007299AL3536921024210493RH474336386.22    1 AC015708, AL353692
S/G/Y/R/B/O NT_007299AL3536921024734053RH1031176395.89    1 AC007747, AC015708, AL353692
S/G/Y/R/B/O NT_007299AL3536921024750893RH266426395.78    1 AC007747, AC015708, AL353692
S/G/Y/R/B/O NT_007299AL1217871025479983RH608926386.33  6596.701 AC007747, AL121787
S/G/Y/R/B/O NT_007299AL1581361025950433          
S/G/Y/R/B/O NT_007299AL1173421026412563WI-5522    6568.501 AL117342
S/G/Y/R/B/O NT_007299AL1173421026460213RH374516397.45    1 AL117342
S/G/Y/R/B/O NT_007299AL1173421026838563RH653506397.55    1 AL117342
S/G/Y/R/B/O NT_007299AL1219411027443073RH610726412.6764228.006599.201 AC027156, AL121941
S/G/Y/R/B/O NT_007299AL1219411027443703RH676746397.55    1 AC027156, AL121941
S/G/Y/R/B/O NT_007299AL1219411027444093RH165006397.45    1 AC027156, AL121941
S/G/Y/R/B/O NT_007299AL1219411027656383RH956  64228.00  1 AC027156, AL121941
S/G/Y/R/B/O NT_007299AL1591641027972103RH1040706410.13    1 AC027156, AL159164
S/G/Y/R/B/O NT_007299AL5906411028448143          
S/G/Y/R/B/O NT_007299AL1329961028455903          
S/G/Y/R/B/O NT_007299AL5910521029445153          
S/G/Y/R/B/O NT_007299AL3915591030310583RH131706399.57    1 AL391559
S/G/Y/R/B/O NT_007299AL1219641030406003RH38272  64219.00  1 AC018675, AC025387, AL121964, AL161435
S/G/Y/R/B/O NT_007299AL1219641030407853RH792386410.03    1 AC018675, AC025387, AL121964, AL161435
S/G/Y/R/B/O NT_007299AL1219641030604383RH607926401.71  6599.201 AL121964, AL161435
S/G/Y/R/B/O NT_007299AL1219641030624993RH766786397.24    1 AC018675, AC025387, AL121964
S/G/Y/R/B/O NT_007299AL1219641030625413RH605696401.71  6598.401 AC018675, AC025387, AL121964, AL161435
S/G/Y/R/B/O NT_007299AL1219641030626623RH74529  64223.00  1 AC018675, AC025387, AL121964, AL161435


  NT_007299 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007299AL1219641030836733RH362466399.57    1 AC018675, AC025387, AL121964, AL161435
S/G/Y/R/B/O NT_007299AL1219641030837083RH677346401.56    1 AC018675, AC025387, AL121964, AL161435
S/G/Y/R/B/O NT_007299AL1219641031034033RH164226399.57    1 AC025387, AL121964, AL161435, AL161435
S/G/Y/R/B/O NT_007299AL1219641031281673WI-3031    6648.901 AC025387, AL121964, AL161435
S/G/Y/R/B/O NT_007299AL1218371031326873          
S/G/Y/R/B/O NT_007299AL1359181032342463RH374086399.57    1 AC021949, AL135918
S/G/Y/R/B/O NT_007299AL4452081033296013          
S/G/Y/R/B/O NT_007299AL3653351033902433          
S/G/Y/R/B/O NT_007299AL6631121035510243          
S/G/Y/R/B/O NT_007299AL6070791035791983          
S/G/Y/R/B/O NT_007299AL4493431037217673          
S/G/Y/R/B/O NT_007299AL0802841038585683RH131506406.18    1 AC027194
S/G/Y/R/B/O NT_007299AL0802841038774653RH376346401.61    1 AC027194, AL080284
S/G/Y/R/B/O NT_007299AL5126001039839043          
S/G/Y/R/B/O NT_007299AL3553511041249763          
S/G/Y/R/B/O NT_007299AL1327661041669233          
S/G/Y/R/B/O NT_007299AL5906351044062623RH156706403.86    1AL592428, AC026043, AL592428
S/G/Y/R/B/O NT_007299AL5906351044062623RH33853  64268.00  1AL592428, AC026043, AL592428
S/G/Y/R/B/O NT_007299AL5924281044911623RH131426409.93    1AL603903, AC026043, AL592428, AL603903
S/G/Y/R/B/O NT_007299AL6039031044923513          
S/G/Y/R/B/O NT_007299AL5908141046643813AFM310XA9    6604.201 AL590814
S/G/Y/R/B/O NT_007299AL6037511046886243          
S/G/Y/R/B/O NT_007299AL5961791048562023RH609526414.74  6615.701 AC016108, AL591303, AL596179
S/G/Y/R/B/O NT_007299AL5961791048563533RH662596403.76    1 AC016108, AL591303, AL596179
S/G/Y/R/B/O NT_007299AL1334571049020523D6S275    6611.801 AC009924, AL133457
S/G/Y/R/B/O NT_007299AL5913041049707273          
S/G/Y/R/B/O NT_007299AL5908691050056403          
S/G/Y/R/B/O NT_007299AL5902301050057343          
S/G/Y/R/B/O NT_007299AL1602651050748503          
S/G/Y/R/B/O NT_007299AL3599871052436033CHLC.GATA74B03    6615.202 AC021418, AL359987, AL450123
S/G/Y/R/B/O NT_007299AL5899471052664493          
S/G/Y/R/B/O NT_007299AL3569561055951103RH374276424.08    1 AL138739, AL356956
S/G/Y/R/B/O NT_007299AL1387311056042283          
S/G/Y/R/B/O NT_007299AL3548571057870073RH938246416.65    1 AC023873, AL354857
S/G/Y/R/B/O NT_007299AL3548571057889123RH372826416.7564415.00  1 AC023873, AL354857
S/G/Y/R/B/O NT_007299AL5910361058940543WI-4491    6618.601 AC009425, AC023873, AC025054, AL591036
S/G/Y/R/B/O NT_007299AL1219661059346153CHLC.GATA68H04    6622.201 AC009425, AC025054
S/G/Y/R/B/O NT_007299AL5915191060784943WI-4816    6626.101 AL590707, AL591519
S/G/Y/R/B/O NT_007299AL5903051061340273          
S/G/Y/R/B/O NT_007299AL3560941062203863          
S/G/Y/R/B/O NT_007299AL3913361063759743          
S/G/Y/R/B/O NT_007299AL5922171064942053          
S/G/Y/R/B/O NT_007299AL3569711066014483RH131336421.25  6627.701 AL356971
S/G/Y/R/B/O NT_007299AL3569711066014483RH873  64442.00  1 AL356971
S/G/Y/R/B/O NT_007299AL1573781066788413          
S/G/Y/R/B/O NT_007299AL1392331067717263          
S/G/Y/R/B/O NT_007299AL0785951069216973RH131136416.71    1 AL078595
S/G/Y/R/B/O NT_007299AL0785951069314383RH33447  64431.00  1 AC007110, AL078595
S/G/Y/R/B/O NT_007299AL0785951069314853RH162856416.65    1 AC007110, AL078595
S/G/Y/R/B/O NT_007299AL1359131070014023          


  NT_007299 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007299AL1217241070790383CHLC.GATA68D05    6627.001 AL121724
S/G/Y/R/B/O NT_007299AL5131861071588523          
S/G/Y/R/B/O NT_007299AL5906701072318043          
S/G/Y/R/B/O NT_007299AL3652271073560573D6S424    6638.301 AC025601
S/G/Y/R/B/O NT_007299AL0314461074512253RH637276428.81    1 AL031446
S/G/Y/R/B/O NT_007299AL1359061074784133          
S/G/Y/R/B/O NT_007299 - RH1021316415.80    3AC002076, AC013452, AC036102, AL159985, AC002076, AC013452, AC036102, AC084370, AL159985, AL162577
S/G/Y/R/B/O NT_007299 - RH1983  64157.00  1AL139274, AC005069, AL139274
S/G/Y/R/B/O NT_007299 - WI-4702    6578.701AL096817, AL096817, AL137180
S/G/Y/R/B/O NT_007299 - RH158306384.55    0  
S/G/Y/R/B/O NT_007299 - RH8620  64148.00  1AL138827, AL138827
S/G/Y/R/B/O NT_007299 - WI-18053    6585.001AL139274, AL139274
S/G/Y/R/B/O NT_007299 - RH269766383.58    0  
S/G/Y/R/B/O NT_007299 - RH270166384.77    1AL031320, AC009472, AL031320
S/G/Y/R/B/O NT_007299 - RH373946424.08    0  
S/G/Y/R/B/O NT_007299 - RH467406392.21    0  
S/G/Y/R/B/O NT_007299 - RH610196385.30  6586.100  
S/G/Y/R/B/O NT_007299 - RH637196383.95    0  
S/G/Y/R/B/O NT_007299 - WI-18995    6586.201AL157777, AL157777