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  Chromosome 17 - RH Maps - Single Contig
 

Chromosome 17 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_024972 NT_033293 NT_010692 NT_033294 NT_033299 NT_010823 NT_024857 NT_010676
NT_024862 NT_010718 NT_030843 NT_010700 NT_010808 NT_010799 NT_010736 NT_033298
NT_010647 NT_010844 NT_024901 NT_010840 NT_010795 NT_024897 NT_010755 NT_010765
NT_010748 NT_033295 NT_010733 NT_010783 NT_033296 NT_010689 NT_010704 NT_029467
NT_033297 NT_010775 NT_010711 NT_024866 NT_030163 NT_010672 NT_010677 NT_033292
NT_010641 NT_010843 NT_010664 NT_024915 NT_010661 NT_024871 NT_025911 NT_010845
NT_010663


  NT_010823
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010823AC01591853583941RH551321753.70  1778.801AC026834, AC015918, AC026834
S/G/Y/R/B/O NT_010823AC01591853621701RH761481747.49    1AC026834, AC015918, AC026834
S/G/Y/R/B/O NT_010823AC01591853945861RH14316  17428.00  1AC026834, AC015918, AC026834
S/G/Y/R/B/O NT_010823AC02683454297641          
S/G/Y/R/B/O NT_010823AF15649554302743          
S/G/Y/R/B/O NT_010823AC00368854545153RH552301753.5017433.001777.901AC026954, AC003688, AC026954, L46590
S/G/Y/R/B/O NT_010823AC00368854648793RH114921745.52    2AC026954, AC108094, AC026954, AC108094
S/G/Y/R/B/O NT_010823AC00368854840953RH1020111753.80    2AC026954, AC108094, AC003688, AC026954, AC108094
S/G/Y/R/B/O NT_010823AC00368854891933RH473921753.39    2AC026954, AC108094, AC003688, AC026954, AC108094
S/G/Y/R/B/O NT_010823AC00368854893673RH158571748.74    2AC026954, AC108094, AC003688, AC026954, AC108094
S/G/Y/R/B/O NT_010823AC00368854894503RH128821753.50    2AC026954, AC108094, AC003688, AC026954, AC108094
S/G/Y/R/B/O NT_010823AC00368855171263RH691981753.80    2AC026954, AC108094, AC003688, AC026954, AC108094, M91463
S/G/Y/R/B/O NT_010823AC02695475629511D17S960    1778.102AC113189, AC113189
S/G/Y/R/B/O NT_010823AC02695478107061RH782841753.39    2AC108094, AC026954, AC108094
S/G/Y/R/B/O NT_010823AC02695478108141RH763651745.95    2AC108094, AC026954, AC108094
S/G/Y/R/B/O NT_010823AC04097755545801RH550801753.80  1778.001AC015918, AC015918, AC040977
S/G/Y/R/B/O NT_010823AC04097755552291RH551641753.39  1777.901AC015918, AC015918, AC040977
S/G/Y/R/B/O NT_010823AC04097755735681SGC33235    1764.301AC015918, AC015918, AC040977
S/G/Y/R/B/O NT_010823AC04097755741581RH14034  17422.00  1AC015918, AC015918, AC040977
S/G/Y/R/B/O NT_010823AC04097755826061RH549921753.50  1777.901AC015918, AC015918, AC040977
S/G/Y/R/B/O NT_010823AC04097755897521RH1021671753.50    1AC015918, AC015918, AC040977
S/G/Y/R/B/O NT_010823AC02776356437402RH476481753.50    1AC040977, AC027763, AC040977
S/G/Y/R/B/O NT_010823AC02776356447612RH481341753.73    1AC040977, AC027763, AC040977
S/G/Y/R/B/O NT_010823AC03430557867323RH1026771753.39    1 AC034305
S/G/Y/R/B/O NT_010823AC03430557869453RH32278  17410.001777.101 AC034305
S/G/Y/R/B/O NT_010823AC03430558092713RH482211753.39    1 AC034305
S/G/Y/R/B/O NT_010823AC00470658996703RH550871753.80  1776.801 AC004706
S/G/Y/R/B/O NT_010823AC00470659403053RH917751754.01    1 AC004706
S/G/Y/R/B/O NT_010823AC00470659403083RH393521746.79    1 AC004706
S/G/Y/R/B/O NT_010823AC00470659417673RH471461753.39    1 AC004706
S/G/Y/R/B/O NT_010823AC00470659437003RH32572  17403.00  1 AC004706
S/G/Y/R/B/O NT_010823AC01591660052771RH183561746.22    1AC015854, AC015854, AC015916
S/G/Y/R/B/O NT_010823AC01591660061701SGC32442    1777.101AC015854, AC015854, AC015916
S/G/Y/R/B/O NT_010823AC01591660062761RH256381748.42    1AC015854, AC015854, AC015916
S/G/Y/R/B/O NT_010823AC09053660234701          
S/G/Y/R/B/O NT_010823AC08375760270051          
S/G/Y/R/B/O NT_010823AC05583962156653RH786911748.02    1 AC001237
S/G/Y/R/B/O NT_010823AC05583962157163RH393171743.59    1 AC001237, AC055839
S/G/Y/R/B/O NT_010823AC05583962176773RH552261747.82  1764.301 AC055839
S/G/Y/R/B/O NT_010823AC00414862265863RH33688  17330.00  1AC055839, AC001237, AC055839
S/G/Y/R/B/O NT_010823AC00414862275023RH550511747.49  1761.001AC055839, AC001237, AC004148, AC055839
S/G/Y/R/B/O NT_010823AC00414862428383RH183611748.02    1 AC001237, AC004148
S/G/Y/R/B/O NT_010823AC00414862438423RH457081747.82    1 AC001237, AC004148
S/G/Y/R/B/O NT_010823AC00414862446453RH258891748.02    1 AC001237, AC004148
S/G/Y/R/B/O NT_010823AC00414862458703RH123721746.26    1 AC001237, AC004148
S/G/Y/R/B/O NT_010823AC00414862748893RH804631745.80    1 AC004148
S/G/Y/R/B/O NT_010823AC00414862749493RH360801743.59    1 AC004148
S/G/Y/R/B/O NT_010823AC00414862762703RH393761743.59    1 AC004148
S/G/Y/R/B/O NT_010823AC00414862839803RH787211747.82    1 AC004148
S/G/Y/R/B/O NT_010823AC00414862842313RH550911747.82  1764.301 AC004148, AF338439


  NT_010823 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010823AC00414862941463RH936041743.59    1 AC004148
S/G/Y/R/B/O NT_010823AC00414862942073RH393971743.59    1 AC004148
S/G/Y/R/B/O NT_010823AC00414863084533RH551971744.8717311.001770.601 AC004148
S/G/Y/R/B/O NT_010823AC00414863260333RH552901747.49  1764.201 AC004148
S/G/Y/R/B/O NT_010823AC00414863315853RH553211747.82  1764.302 AC004148
S/G/Y/R/B/O NT_010823AC00414863326873RH553041748.02  1770.601 AC004148, AC015727
S/G/Y/R/B/O NT_010823AC00414863336773RH677861744.02    1 AC015727
S/G/Y/R/B/O NT_010823AC00414863338503RH393191743.17    1 AC004148, AC015727
S/G/Y/R/B/O NT_010823AC00414863339833RH553271746.4417318.001770.601 AC004148, AC015727
S/G/Y/R/B/O NT_010823AC00414863401413RH748411747.82    1 AC004148, AC015727
S/G/Y/R/B/O NT_010823AC00623664186073RH31395  17343.00  1AC083757, AC006236, AC083757
S/G/Y/R/B/O NT_010823AC00784665245922RH1042341744.87    1 AC007846
S/G/Y/R/B/O NT_010823AC00123166560613CHLC.GATA86H04    1766.901 AC001231
S/G/Y/R/B/O NT_010823AC00796267260051RH31394  17349.00  1AC001231, AC104770, AC001231, AC007962, AC104770
S/G/Y/R/B/O NT_010823AC10477067810012RH102881746.33    1AC007962, AC007962, AC104770
S/G/Y/R/B/O NT_010823AC01585468062681          
S/G/Y/R/B/O NT_010823AC05587268254571WI-7497    1774.001AC015854, AC015916, AC015854, AC015916, AC055872
S/G/Y/R/B/O NT_010823AC05587269146781RH159581746.90    1 AC055872
S/G/Y/R/B/O NT_010823AC05587269147251RH257071751.78    1 AC055872
S/G/Y/R/B/O NT_010823AC05587269152801RH1044521751.68    3AC004066, AL353692, AC004066, AC015708, AC055872, AC093696, AC108936, AL353692, AP001946
S/G/Y/R/B/O NT_010823AC05587269422481RH786371751.78    1 AC055872
S/G/Y/R/B/O NT_010823AC05587269422681RH392831751.78    1 AC055872
S/G/Y/R/B/O NT_010823AC00566870177833D17S796    1774.201 AC005668
S/G/Y/R/B/O NT_010823AC00566870200233RH42871751.78  1774.301 AC005668
S/G/Y/R/B/O NT_010823AC00566870200233RH31781  17371.00  1 AC005668
S/G/Y/R/B/O NT_010823AC02330871041562          
S/G/Y/R/B/O NT_010823AC00234871828931RH933121753.50    2AC108094, AC113189, AC002348, AC108094, AC113189, AF097738
S/G/Y/R/B/O NT_010823AC00234871831151RH174161746.44    2AC108094, AC113189, AC002348, AC108094, AC113189, AF097738
S/G/Y/R/B/O NT_010823AC11318971938742RH549551753.39  1777.902AC002348, AC108094, AC002348, AC108094, AC113189
S/G/Y/R/B/O NT_010823AC11318971939262RH469791753.50    2AC002348, AC108094, AC002348, AC108094, AC113189
S/G/Y/R/B/O NT_010823AC11318972103952RH159911753.39    2AC016876, AC108094, AC016876, AC108094, AC113189
S/G/Y/R/B/O NT_010823AC11318972105452RH168641746.58    2AC002348, AC002348
S/G/Y/R/B/O NT_010823AC11318972264202RH185111748.53    2AC002348, AC007732, AC016876, AC108094, AC002348, AC007732, AC016876, AC108094, AC113189
S/G/Y/R/B/O NT_010823AC11318972355922RH394171753.50    1AC002348, AC007732, AC016876, AC002348, AC007732, AC016876, AC113189
S/G/Y/R/B/O NT_010823AC11318973143622RH1043821753.50    1AC002348, AC007732, AC016876, AC002348, AC007732, AC016876, AC113189
S/G/Y/R/B/O NT_010823AC11318973392502WI-16243    1780.701AC002348, AC007732, AC002348, AC007732, AC113189, X74870
S/G/Y/R/B/O NT_010823AC01687672182511RH984481753.80    2AC002348, AC108094, AC113189, AC002348, AC016876, AC108094, AC113189
S/G/Y/R/B/O NT_010823AC01687672598731RH989581754.42    1 AC016876
S/G/Y/R/B/O NT_010823AC01687672634141RH160091753.60    1 AC016876
S/G/Y/R/B/O NT_010823AC01687672830601RH394311746.44    1AC002348, AC007732, AC113189, AC002348, AC007732, AC016876, AC113189
S/G/Y/R/B/O NT_010823AC01687672837371RH551891753.90  1780.201AC002348, AC007732, AC113189, AC002348, AC007732, AC016876, AC113189
S/G/Y/R/B/O NT_010823AC01687672865341WI-21649    1769.301AC002348, AC007732, AC002348, AC007732, AC016876
S/G/Y/R/B/O NT_010823AC01687673581161RH255151754.52    1 AC016876
S/G/Y/R/B/O NT_010823AC01687673592241RH169591746.16    1 AC016876
S/G/Y/R/B/O NT_010823AC00773272759501          
S/G/Y/R/B/O NT_010823AC00742173619173RH14937  17456.00  1AC016876, AC007421, AC016876
S/G/Y/R/B/O NT_010823AC00742173652393WI-22031    1785.801AC016876, AC016876
S/G/Y/R/B/O NT_010823AC00742173652393RH551581767.93    1AC016876, AC016876
S/G/Y/R/B/O NT_010823AC00742173653213RH393741746.65    1AC016876, AC007421, AC016876
S/G/Y/R/B/O NT_010823AC00742173709573RH552721754.62  1784.001AC016876, AC007421, AC016876


  NT_010823 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010823AC00742173745503RH747831754.52    1AC016876, AC007421, AC016876
S/G/Y/R/B/O NT_010823AC00742173777463RH393201745.47    1AC008049, AC087388, AC007421, AC008049, AC087388
S/G/Y/R/B/O NT_010823AC00742173778043RH676051746.65    1AC008049, AC087388, AC007421, AC008049, AC087388
S/G/Y/R/B/O NT_010823AC00742174095073RH1202  17451.00  1AC087388, AC087388
S/G/Y/R/B/O NT_010823AC00742174095733RH183291748.53    1AC008049, AC087388, AC007421, AC008049, AC087388
S/G/Y/R/B/O NT_010823AC00742174165013RH33619  17451.001764.101AC008049, AC087388, AC007421, AC008049, AC087388, M31651, X16349
S/G/Y/R/B/O NT_010823AC00742174391633RH551551748.53  1784.301 AC007421, AF007876
S/G/Y/R/B/O NT_010823AC00742174404443RH114581746.65    1AC008049, AC087388, AC007421, AC008049, AC087388, AF007876
S/G/Y/R/B/O NT_010823AC00742174517413RH552941754.01  1782.302AC008049, AC087388, U94788, AC007421, AC008049, AC087388, U94788, X54156
S/G/Y/R/B/O NT_010823AC00742174525163RH548951753.60  1781.702AC087388, U94788, AC087388, U94788, X54156
S/G/Y/R/B/O NT_010823U9478874554443          
S/G/Y/R/B/O NT_010823AC08738874863241RH1029591748.45    1AC008049, AC008049, AC087388
S/G/Y/R/B/O NT_010823AC00804974944471RH679721753.90    1 AC008049
S/G/Y/R/B/O NT_010823AC00804975379261SGC30770    1779.001AC025335, AC087388, AC008049, AC025335, AC087388
S/G/Y/R/B/O NT_010823AC00804977882421RH548951753.60  1781.702AC087388, U94788, AC087388, U94788, X54156
S/G/Y/R/B/O NT_010823AC00804977893031RH552941754.01  1782.302AC007421, AC087388, U94788, AC007421, AC008049, AC087388, U94788, X54156
S/G/Y/R/B/O NT_010823AC02533581517241WI-11540    1778.801AC104581, AC025335, AC104581
S/G/Y/R/B/O NT_010823AC02533581519381RH360441753.60    1AC104581, AC025335, AC104581
S/G/Y/R/B/O NT_010823AC02533581573741RH184721753.50    1AC104581, AC025335, AC104581
S/G/Y/R/B/O NT_010823AC02533581579771RH552831754.11  1780.501AC104581, AC025335, AC104581
S/G/Y/R/B/O NT_010823AC02533581579961RH265191753.70    1AC104581, AC025335, AC104581
S/G/Y/R/B/O NT_010823AC01573476064091RH183591747.00    1 AC015734
S/G/Y/R/B/O NT_010823AC01573476136721RH1026971755.05    1 AC015734
S/G/Y/R/B/O NT_010823AC01573476241091RH442011753.90    1 AC015734
S/G/Y/R/B/O NT_010823AC01573478355651RH175061746.44    1 AC015734
S/G/Y/R/B/O NT_010823AC01573478358501RH551041753.90  1780.001 AC015734
S/G/Y/R/B/O NT_010823AC10476276364912RH448991753.50    1AC015734, AC015734, AC104762, AF135372
S/G/Y/R/B/O NT_010823AC10476276383962TIGR-A002F11    1763.701AC015734, AC015734, AC104762, AF135372
S/G/Y/R/B/O NT_010823AC10476276395632RH125421753.70    1 AF135372
S/G/Y/R/B/O NT_010823AC10476276547652RH983961753.90    1AC015734, AB030817, AC015734, AC104762, AF102137
S/G/Y/R/B/O NT_010823AC10476276788932RH111541747.49    1AC015734, AC107913, AC015734, AC104762, AC107913, Z26635
S/G/Y/R/B/O NT_010823AC10791378812572          
S/G/Y/R/B/O NT_010823AC10458179399302RH549951753.5017451.001781.701 AJ222657
S/G/Y/R/B/O NT_010823AC10458179412452RH549501753.5017458.001780.301AC104762, AC107913, AC104581, AC104762, AC107913
S/G/Y/R/B/O NT_010823AC10458179480012RH549681753.90  1781.601AC104762, AC107913, AC104581, AC104762, AC107913, AJ222657
S/G/Y/R/B/O NT_010823AC10458180014122RH120211753.90    1 AC104581
S/G/Y/R/B/O NT_010823AC10458180017552RH549521753.50  1781.701 AC104581
S/G/Y/R/B/O NT_010823AC10458180019162RH474121754.01    1 AC104581
S/G/Y/R/B/O NT_010823AC10458180019642WI-22609    1780.501 AC104581
S/G/Y/R/B/O NT_010823AC10458180117082RH552541753.90  1782.401 AC104581
S/G/Y/R/B/O NT_010823AC10458180165122RH551421753.5017445.001781.701 AC104581
S/G/Y/R/B/O NT_010823AC10458180197342RH553241753.50  1781.701 AC104581, AF129332
S/G/Y/R/B/O NT_010823AC10458180387702RH786331753.50    1 AC104581
S/G/Y/R/B/O NT_010823AC10809482562361RH549551753.39  1777.902AC002348, AC113189, AC002348, AC108094, AC113189
S/G/Y/R/B/O NT_010823AC10809482563961RH469791753.50    2AC002348, AC113189, AC002348, AC108094, AC113189
S/G/Y/R/B/O NT_010823AC10809482660011RH185111748.53    2AC002348, AC007732, AC016876, AC113189, AC002348, AC007732, AC016876, AC108094, AC113189
S/G/Y/R/B/O NT_010823AC10809482932171RH691981753.80    2AC003688, AC026954, AC003688, AC026954, AC108094, M91463
S/G/Y/R/B/O NT_010823AC10809482963391RH984481753.80    2AC002348, AC016876, AC113189, AC002348, AC016876, AC108094, AC113189
S/G/Y/R/B/O NT_010823AC10809483039991RH168641746.58    2AC002348, AC002348
S/G/Y/R/B/O NT_010823AC10809483040251RH159911753.39    2AC016876, AC113189, AC016876, AC108094, AC113189


  NT_010823 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010823AC10809483335201RH128821753.50    2AC003688, AC026954, AC003688, AC026954, AC108094
S/G/Y/R/B/O NT_010823AC10809483336041RH158571748.74    2AC003688, AC026954, AC003688, AC026954, AC108094
S/G/Y/R/B/O NT_010823AC10809483337841RH473921753.39    2AC003688, AC026954, AC003688, AC026954, AC108094
S/G/Y/R/B/O NT_010823AC10809483388821RH1020111753.80    2AC003688, AC026954, AC003688, AC026954, AC108094
S/G/Y/R/B/O NT_010823AC10809483455991RH174161746.44    2AC002348, AC113189, AC002348, AC108094, AC113189, AF097738
S/G/Y/R/B/O NT_010823AC10809483459871RH933121753.50    2AC002348, AC113189, AC002348, AC108094, AC113189, AF097738
S/G/Y/R/B/O NT_010823AC10809483711481RH114921745.52    2AC026954, AC026954, AC108094
S/G/Y/R/B/O NT_010823AC10809484140101D17S960    1778.102AC113189, AC113189
S/G/Y/R/B/O NT_010823AC10809484527681RH782841753.39    2AC026954, AC026954, AC108094
S/G/Y/R/B/O NT_010823AC10809484528761RH763651745.95    2AC026954, AC026954, AC108094
S/G/Y/R/B/O NT_010823 - RH115761753.50    0  
S/G/Y/R/B/O NT_010823 - RH133101751.68    0  
S/G/Y/R/B/O NT_010823 - RH172011746.65    1AC008053, AC008053
S/G/Y/R/B/O NT_010823 - RH252861753.80    0  
S/G/Y/R/B/O NT_010823 - RH255381748.02    0  
S/G/Y/R/B/O NT_010823 - RH366261754.52    0 AF175325
S/G/Y/R/B/O NT_010823 - RH548921747.21  1761.100 AC015727
S/G/Y/R/B/O NT_010823 - RH550451747.49  1764.200 AC015727
S/G/Y/R/B/O NT_010823 - RH552991746.33    0AL158158, AL158158
S/G/Y/R/B/O NT_010823 - SGC33773    1770.601AC008058, AC025233, AC087500, AC008058, AC015727, AC025233, AC087500
S/G/Y/R/B/O NT_010823 - RH661951744.98    0AC012146, AC074339, AC012146, AC074339
S/G/Y/R/B/O NT_010823 - RH750751745.47    0AC015734, AC104762, AB030817, AC015734, AC104762
S/G/Y/R/B/O NT_010823 - RH807201745.63    1AC008053, AC008053
S/G/Y/R/B/O NT_010823 - RH930731747.49    1AC005695, AC005695
S/G/Y/R/B/O NT_010823 - RH931501748.42    0  
S/G/Y/R/B/O NT_010823 - RH936301746.44    0