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  Chromosome 17 - RH Maps - Single Contig
 

Chromosome 17 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_024972 NT_033293 NT_010692 NT_033294 NT_033299 NT_010823 NT_024857 NT_010676
NT_024862 NT_010718 NT_030843 NT_010700 NT_010808 NT_010799 NT_010736 NT_033298
NT_010647 NT_010844 NT_024901 NT_010840 NT_010795 NT_024897 NT_010755 NT_010765
NT_010748 NT_033295 NT_010733 NT_010783 NT_033296 NT_010689 NT_010704 NT_029467
NT_033297 NT_010775 NT_010711 NT_024866 NT_030163 NT_010672 NT_010677 NT_033292
NT_010641 NT_010843 NT_010664 NT_024915 NT_010661 NT_024871 NT_025911 NT_010845
NT_010663


  NT_024901
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_024901AC080112359528351RH1844417309.33    1AC015851, AC015851, AC080112
S/G/Y/R/B/O NT_024901AC080112359578791RH3931217314.28    1AC015851, AC015851, AC080112
S/G/Y/R/B/O NT_024901AC080112359581321RH1035717309.23    1AC015851, AC015851
S/G/Y/R/B/O NT_024901AC080112359582431WI-15402    17330.701AC015851, AC015851, AC080112
S/G/Y/R/B/O NT_024901AC080112359582431RH5519417309.33    1AC015851, AC015851, AC080112
S/G/Y/R/B/O NT_024901AC080112359604771RH1040817309.33    1AC015851, AC015851, AC080112
S/G/Y/R/B/O NT_024901AC080112359609571RH1761  172103.00  1AC015851, AC015851, AC080112
S/G/Y/R/B/O NT_024901AC080112359609571RH9144117309.33    1AC015851, AC015851, AC080112
S/G/Y/R/B/O NT_024901AC080112359610121RH8761  172098.00  1AC015851, AC015851, AC080112
S/G/Y/R/B/O NT_024901AC015851359805931RH7592817304.65    1AC080112, AC090426, AC015851, AC080112, AC090426
S/G/Y/R/B/O NT_024901AC015851359811071RH7042417311.86    1AC080112, AC090426, AC015851, AC080112, AC090426
S/G/Y/R/B/O NT_024901AC015851360195331RH7666617317.39    1AC080112, AC090426, AC015851, AC080112, AC090426, AJ297538
S/G/Y/R/B/O NT_024901AC090426360393043RH4490817309.33    1AC015851, AC080112, AC015851, AC080112
S/G/Y/R/B/O NT_024901AC090426360671003RH32252  172075.0017330.701AC015851, AC018629, AC080112, AC015851, AC018629, AC080112, AC090426, AF071747
S/G/Y/R/B/O NT_024901AC090426360671003RH5498317311.76    1AC015851, AC018629, AC080112, AC015851, AC018629, AC080112, AC090426, AF071747
S/G/Y/R/B/O NT_024901AC090426360673293RH1765817309.33    1AC015851, AC018629, AC015851, AC018629, AC090426, AF071747
S/G/Y/R/B/O NT_024901AC090426360679343RH9005  172116.0017330.701AC015851, AC018629, AC080112, AC015851, AC018629, AC080112, AC090426, AF071747
S/G/Y/R/B/O NT_024901AC090426360679343RH5512617311.76    1AC015851, AC018629, AC080112, AC015851, AC018629, AC080112, AC090426, AF071747
S/G/Y/R/B/O NT_024901AC090426360777513RH1287217313.78    1AC015851, AC018629, AC080112, AC015851, AC018629, AC080112, AC090426
S/G/Y/R/B/O NT_024901AC018629361358231RH1771717314.28    1AC016960, AC016960, AC018629, U20982, Y12508
S/G/Y/R/B/O NT_024901AC018629361361381RH6720417311.56    1AC016960, AC016960, AC018629, U20982, Y12508
S/G/Y/R/B/O NT_024901AC018629361520481RH9289117309.33    1AC016960, AC016960, AC018629
S/G/Y/R/B/O NT_024901AC018629361544791RH6987817312.46    1 AC018629
S/G/Y/R/B/O NT_024901AC016960361898961          
S/G/Y/R/B/O NT_024901AC004585362398853WI-9139    17330.701AC016960, AC004585, AC016960, L31584
S/G/Y/R/B/O NT_024901AC004585362398853RH5523617309.33    1AC016960, AC004585, AC016960, L31584
S/G/Y/R/B/O NT_024901AC004585362449333RH6903917309.33    1AC016960, AC004585, AC016960
S/G/Y/R/B/O NT_024901AC004585363138093RH5498917316.02  17338.801AC073508, AC004585, AC073508
S/G/Y/R/B/O NT_024901AC004585363138373RH2503717311.86    1AC073508, AC004585, AC073508
S/G/Y/R/B/O NT_024901AC073508363266773RH7570217317.07    1AC005919, AC005919, AC073508
S/G/Y/R/B/O NT_024901AC073508363268313RH10315717311.86    1AC005919, AC005919, AC073508
S/G/Y/R/B/O NT_024901AC073508363400103WI-22286    17330.601AC005919, AC005919, AC073508
S/G/Y/R/B/O NT_024901AC073508363400103RH5500417309.74    1AC005919, AC005919, AC073508
S/G/Y/R/B/O NT_024901AC073508363417373RH5521117313.88  17338.901AC005919, AC005919, AC073508
S/G/Y/R/B/O NT_024901AC073508363417773RH993117314.49    1AC005919, AC005919, AC073508
S/G/Y/R/B/O NT_024901AC073508363424683RH2559817309.33    1AC005919, AC005919, AC073508
S/G/Y/R/B/O NT_024901AC005919363842243RH9191717309.55    1AC090283, AC005919, AC090283
S/G/Y/R/B/O NT_024901AC090283365041582RH5514417315.81    1 AC090283, X14487
S/G/Y/R/B/O NT_024901AC090283365042692RH7624317304.54    1 AC090283, X14487
S/G/Y/R/B/O NT_024901AC090283365044582RH3943017308.91    1 AC090283, X14487
S/G/Y/R/B/O NT_024901AC004231365155363RH4647517309.55    2AC092017, AL611964, AC004231, AC092017, AL611964
S/G/Y/R/B/O NT_024901AC004231365206673RH5513717308.41  17341.301AC090283, AC004231, AC090283
S/G/Y/R/B/O NT_024901AC004231365211873RH4758317316.27    1AC090283, AC004231, AC090283
S/G/Y/R/B/O NT_024901AC004231365240713CHLC.GATA25A04    17331.201AC090283, AC004231, AC090283
S/G/Y/R/B/O NT_024901AC004231365474173RH4693817312.06    1 AC004231, AF137286
S/G/Y/R/B/O NT_024901AC004231365619933RH14090  172060.0017330.801 AC004231, X73501
S/G/Y/R/B/O NT_024901AC004231365619933RH5509617308.91    1 AC004231, X73501
S/G/Y/R/B/O NT_024901AC004231365622073RH1813017312.06    1 AC004231, X73501
S/G/Y/R/B/O NT_024901AC004231365860453D17S800    17330.701 AC004231
S/G/Y/R/B/O NT_024901AC004231365860453RH424917311.76    1 AC004231


  NT_024901 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_024901AC004231365860453RH859  172056.00  1 AC004231
S/G/Y/R/B/O NT_024901AC004231366087443RH3941217308.93    1 AC004231
S/G/Y/R/B/O NT_024901AC004231366116843RH5503017309.12  17338.901 AC004231
S/G/Y/R/B/O NT_024901AC007455366575083RH14920  172042.00  1AC037482, AC007455, AC037482
S/G/Y/R/B/O NT_024901AC037482367362383          
S/G/Y/R/B/O NT_024901AC025904368147791          
S/G/Y/R/B/O NT_024901AC019349368561681RH31401  172158.00  1 AC019349, X75015
S/G/Y/R/B/O NT_024901AC019349368697741RH5493517305.36    1AC105208, AC019349, AC105208, J00124
S/G/Y/R/B/O NT_024901AC019349368697741SGC35551    17338.901AC105208, AC019349, AC105208, J00124
S/G/Y/R/B/O NT_024901AC019349372108321RH3943917308.41    1 AC019349, X90761
S/G/Y/R/B/O NT_024901AC019349372275471RH7600417304.61    1 AC019349, Y16791
S/G/Y/R/B/O NT_024901AC019349372518381RH13895  172151.00  1 AC019349, AF049259
S/G/Y/R/B/O NT_024901AC019349372518441RH6639517309.42    1 AC019349
S/G/Y/R/B/O NT_024901AC019349372519041RH1810217307.23    1 AC019349, AF049259
S/G/Y/R/B/O NT_024901AC019349372646031RH13905  172158.00  1 AC019349, AF202320
S/G/Y/R/B/O NT_024901AC019349372646031RH5506617309.01  17343.601 AC019349, AF202320
S/G/Y/R/B/O NT_024901AC019349372646191RH1747717307.04    1 AC019349, AF202320
S/G/Y/R/B/O NT_024901AC019349372946171RH14124  13135.00  3AC015818, AC022596, AC069486, AC105208, AL353997, AC015818, AC019349, AC020664, AC021094, AC022596, AC023401, AC027266, AC069486, AC105208, AF061809, AL353997
S/G/Y/R/B/O NT_024901AC105208368786162          
S/G/Y/R/B/O NT_024901AC006070369782613RH8039217305.04    2 AC006070, AC006070
S/G/Y/R/B/O NT_024901AC006070369840543RH9835617309.01    2 AC006070, AC006070
S/G/Y/R/B/O NT_024901AC006070369896133RH8039217305.04    2 AC006070, AC006070
S/G/Y/R/B/O NT_024901AC006070370012583RH9835617309.01    2 AC006070, AC006070
S/G/Y/R/B/O NT_024901AC003958370966253RH10398317306.52    1 AC003958, NG_000018, Y16788
S/G/Y/R/B/O NT_024901AC003958371143523RH5514017307.04    1 AC003958, NG_000018, Y16789
S/G/Y/R/B/O NT_024901AC003958371143523SGC35567    17339.201 AC003958, NG_000018, Y16789
S/G/Y/R/B/O NT_024901AC003958371288213RH9902117307.04    1 AC003958, NG_000018, Y16790
S/G/Y/R/B/O NT_024901AC003958371446463RH3944117307.04    1 Y16787
S/G/Y/R/B/O NT_024901AC003958371548893RH7006017307.23    1 AC003958, NG_000018
S/G/Y/R/B/O NT_024901 - RH13742  172101.00  1AC002118, AC006449, AC024189, AC002118, AC006449, AC024189
S/G/Y/R/B/O NT_024901 - SGC32078    17328.200  
S/G/Y/R/B/O NT_024901 - SGC44582    17329.901AC021317, AC021469, AC025682, AC021317, AC021469, AC025682
S/G/Y/R/B/O NT_024901 - WI-21045    17329.901AC011184, AC011184
S/G/Y/R/B/O NT_024901 - WI-10793    17330.601AC004132, AC113211, AC004132, AC113211
S/G/Y/R/B/O NT_024901 - WI-7310    17331.701AC004132, AC091199, AC004132, AC091199