Chromosome 9 - RH Maps - Single Contig

Chromosome 9 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033218	NT_008413	NT_027081	NT_023974	NT_030040	NT_033214	NT_030759	NT_030753
NT_033213	NT_033210	NT_008389	NT_033219	NT_033217	NT_029359	NT_033209	NT_033206
NT_033208	NT_033212	NT_033205	NT_033203	NT_031832	NT_033211	NT_033207	NT_008580
NT_023935	NT_028278	NT_023975	NT_023946	NT_023932	NT_024010	NT_033202	NT_008476
NT_033216	NT_008470	NT_008438	NT_017568	NT_029366	NT_008338	NT_031835	NT_017539
NT_008554	NT_023969	NT_030058	NT_019501	NT_033215	NT_024000	NT_023929	NT_023989

NT_008438

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_008438	AL445487	98081467	3
S/G/Y/R/B/O	NT_008438	AL137852	98247798	1	WI-5160					9	405.60	1		AL137852
S/G/Y/R/B/O	NT_008438	AL137852	98256720	1	RH40432	9	346.75					1		AL137852
S/G/Y/R/B/O	NT_008438	AL137852	98285407	1	RH26138	9	339.88					1		AL137852
S/G/Y/R/B/O	NT_008438	AL137852	98286196	1	RH63078	9	346.70			9	416.20	1		AL137852
S/G/Y/R/B/O	NT_008438	AL359552	98355907	3
S/G/Y/R/B/O	NT_008438	AL360218	98440377	2
S/G/Y/R/B/O	NT_008438	AL389915	98471272	3
S/G/Y/R/B/O	NT_008438	AL162389	98670873	3
S/G/Y/R/B/O	NT_008438	AL353137	98832333	3	WI-10504					9	416.40	1		AL353137
S/G/Y/R/B/O	NT_008438	AL358432	98933283	3
S/G/Y/R/B/O	NT_008438	AC011877	99028679	1	RH33752			9	3552.00			1		AC011877, AC068050
S/G/Y/R/B/O	NT_008438	AL353742	99054991	3	WI-3931					9	404.60	1	AC011877,	AC011877, AC068050, AL353742
S/G/Y/R/B/O	NT_008438	AL137019	99221082	3
S/G/Y/R/B/O	NT_008438	AL353766	99400624	3
S/G/Y/R/B/O	NT_008438	AL669983	99582166	3
S/G/Y/R/B/O	NT_008438	AL358779	99640891	3
S/G/Y/R/B/O	NT_008438	AL359692	99823512	3	RH40385	9	350.70					1
S/G/Y/R/B/O	NT_008438	AL359692	99824004	3	RH7814			9	3595.00			1		AL359692
S/G/Y/R/B/O	NT_008438	AL359692	99824475	3	RH62883	9	350.70			9	414.40	1		AL359692
S/G/Y/R/B/O	NT_008438	AL359692	99826848	3	RH63001	9	347.47			9	413.10	2	AC026572, AC099673, AC105941, AP003477,	AC026572, AC079106, AC099673, AC105941, AL359692, AP003477
S/G/Y/R/B/O	NT_008438	AL354797	99898428	1	RH76169	9	348.88					1		AC013783, AL354797
S/G/Y/R/B/O	NT_008438	AL354797	99906273	1	RH102038	9	350.70					1		AC013783, AL354797
S/G/Y/R/B/O	NT_008438	AL354797	99911285	1	SGC38315					9	404.40	1		AC013783, AL354797
S/G/Y/R/B/O	NT_008438	AL354797	99911285	1	RH62840	9	339.88					1		AC013783, AL354797
S/G/Y/R/B/O	NT_008438	AL354797	99971033	1	RH25592	9	350.70					1		AC013783, AL354797
S/G/Y/R/B/O	NT_008438	AL354797	99972508	1	RH62792	9	350.80			9	414.50	1		AC013783, AL354797
S/G/Y/R/B/O	NT_008438	AL354797	99972612	1	RH18174	9	350.70					1		AC013783, AL354797
S/G/Y/R/B/O	NT_008438	AL354797	99973871	1	RH25927	9	350.70					1		AC013783, AL354797
S/G/Y/R/B/O	NT_008438	AL354797	99974863	1	RH63204	9	350.70			9	414.50	1		AC013783, AL354797
S/G/Y/R/B/O	NT_008438	AL354797	99975013	1	RH40443	9	350.70					1		AC013783, AL354797
S/G/Y/R/B/O	NT_008438	AL354797	99975987	1	RH16318	9	350.70					1		AC013783, AL354797
S/G/Y/R/B/O	NT_008438	AL354797	100036967	1	RH62873	9	350.70			9	414.40	1		AC013783, AL354797
S/G/Y/R/B/O	NT_008438	AL354797	100045276	1	RH65051	9	350.70					1		AC013783, AL354797
S/G/Y/R/B/O	NT_008438	AL669894	100048516	3
S/G/Y/R/B/O	NT_008438	AL358815	100088744	3	RH78481	9	350.70					1		AL358815
S/G/Y/R/B/O	NT_008438	AL358815	100127802	3	RH63091	9	350.70			9	414.40	1		AL358815
S/G/Y/R/B/O	NT_008438	AL358815	100127802	3	RH14280			9	3602.00			1		AL358815
S/G/Y/R/B/O	NT_008438	AL358815	100127813	3	RH12312	9	350.70					1		AL358815
S/G/Y/R/B/O	NT_008438	AL358815	100129410	3	RH93040	9	350.70					1		AL358815
S/G/Y/R/B/O	NT_008438	AL358815	100131074	3	RH41757			9	3602.00			1		AL358815
S/G/Y/R/B/O	NT_008438	AL358815	100195620	3	RH40355	9	350.70					1		AC013568, AL358815
S/G/Y/R/B/O	NT_008438	AL358815	100196006	3	RH36598	9	350.70					1		AC013568, AL358815
S/G/Y/R/B/O	NT_008438	AL358815	100197250	3	RH40344	9	350.70					1		AC013568, AL358815
S/G/Y/R/B/O	NT_008438	AL358815	100197378	3	RH67635	9	352.31					1		AC013568, AL358815
S/G/Y/R/B/O	NT_008438	AL359963	100331567	3	RH67562	9	350.70					1		AC013568, AL359963
S/G/Y/R/B/O	NT_008438	AL359963	100331574	3	RH91146	9	348.88					1		AC013568, AL359963
S/G/Y/R/B/O	NT_008438	AL359963	100331627	3	RH36886	9	346.14					1		AL359963
S/G/Y/R/B/O	NT_008438	AL359963	100334101	3	RH76168	9	350.60					1		AC013568, AL359963
S/G/Y/R/B/O	NT_008438	AL359963	100334232	3	RH78381	9	350.70					1		AC013568, AL359963

NT_008438 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_008438	AL359963	100366589	3	WI-10390					9	414.40	1		AL359963
S/G/Y/R/B/O	NT_008438	AL450025	100374356	3
S/G/Y/R/B/O	NT_008438	AL162733	100382170	2	RH42894			9	3602.00			1		AL162733
S/G/Y/R/B/O	NT_008438	AL162733	100440366	2	RH48492	9	339.78					1		AL162733
S/G/Y/R/B/O	NT_008438	AL135789	100572544	3	D9S160					9	408.10	1		AL135789
S/G/Y/R/B/O	NT_008438	AL135789	100572544	3	RH13229	9	350.70					1		AL135789
S/G/Y/R/B/O	NT_008438	AL135789	100672489	3	WI-2032					9	414.40	1		AL135789
S/G/Y/R/B/O	NT_008438	AL158829	100699720	3
S/G/Y/R/B/O	NT_008438	AL627225	100834443	3
S/G/Y/R/B/O	NT_008438	AL353806	100836437	3
S/G/Y/R/B/O	NT_008438	AL158823	100945490	3
S/G/Y/R/B/O	NT_008438	AL353598	101124715	3	RH76622	9	346.18					1		AL353598
S/G/Y/R/B/O	NT_008438	AL353598	101125837	3	RH103086	9	339.88					1		AL353598
S/G/Y/R/B/O	NT_008438	AL353598	101128075	3	RH76110	9	347.22					1		AL353598
S/G/Y/R/B/O	NT_008438	AL353598	101155619	3	RH102122	9	350.70					1		AL353598
S/G/Y/R/B/O	NT_008438	AL158158	101199799	3	RH62682	9	350.70	9	3608.00	9	413.00	1		AL158158
S/G/Y/R/B/O	NT_008438	AL158158	101321185	3	RH12799	9	347.26					1		AL158158
S/G/Y/R/B/O	NT_008438	AL158158	101322108	3	RH91731	9	339.88					1		AL158158
S/G/Y/R/B/O	NT_008438	AL158158	101322110	3	RH74566			9	3606.00			1		AL158158
S/G/Y/R/B/O	NT_008438	AL354982	101456244	3	RH47642	9	350.80					1		AL354982
S/G/Y/R/B/O	NT_008438	AL354982	101467417	3	RH40419	9	350.80					1		AL354982
S/G/Y/R/B/O	NT_008438	AL592463	101503428	3
S/G/Y/R/B/O	NT_008438	AL513328	101598207	3
S/G/Y/R/B/O	NT_008438	AL157881	101829599	3	RH38179			9	3639.00			1	AL442064,	AL157881, AL442064, AL590646, AP000882
S/G/Y/R/B/O	NT_008438	AL157881	101829794	3	RH91223	9	350.80					1	AL442064,	AL157881, AL442064, AL590646, AP000882
S/G/Y/R/B/O	NT_008438	AL157881	101830013	3	RH62891	9	350.80			9	415.80	1	AL442064,	AL157881, AL442064, AL590646, AP000882
S/G/Y/R/B/O	NT_008438	AL157881	101830910	3	RH10304	9	350.60					1	AL442064,	AL157881, AL442064, AL590646, AP000882
S/G/Y/R/B/O	NT_008438	AL442064	101895803	3	RH103751	9	350.80					1		AL442064, AL590646
S/G/Y/R/B/O	NT_008438	AL442064	101968052	3	AFM317ZF1					9	419.00	1	AC007157,	AC007157, AL442064
S/G/Y/R/B/O	NT_008438	AC007157	101976393	3
S/G/Y/R/B/O	NT_008438	AL365231	102060878	3
S/G/Y/R/B/O	NT_008438	AL162414	102228710	3	RH7534	9	352.62					1	AC011653,	AC011653, AL162414
S/G/Y/R/B/O	NT_008438	AL354661	102316510	3	RH62796	9	352.72			9	416.60	1		AL354661
S/G/Y/R/B/O	NT_008438	AL354661	102316656	3	RH10440	9	352.92					1		AL354661
S/G/Y/R/B/O	NT_008438	AL159168	102395447	3	RH11011	9	354.43					1		AL159168
S/G/Y/R/B/O	NT_008438	AL159168	102510532	3	RH62925	9	356.13	9	3692.00			1		AL159168
S/G/Y/R/B/O	NT_008438	AL159168	102510532	3	SGC33630					9	429.10	1		AL159168
S/G/Y/R/B/O	NT_008438	AL159168	102510589	3	RH16615	9	356.13					1		AL159168
S/G/Y/R/B/O	NT_008438	AL135787	102543631	3	RH66479	9	368.27					1		AL135787
S/G/Y/R/B/O	NT_008438	AL135787	102545921	3	RH69266	9	356.03					1		AL135787
S/G/Y/R/B/O	NT_008438	AL135787	102610010	3	RH65734	9	356.03					1		AL135787
S/G/Y/R/B/O	NT_008438	AL135787	102620736	3	RH63117	9	356.13					1		AL135787
S/G/Y/R/B/O	NT_008438	AL135787	102620736	3	WI-17453					9	429.60	1		AL135787
S/G/Y/R/B/O	NT_008438	AL135787	102625853	3	RH18162	9	355.73					1		AL135787
S/G/Y/R/B/O	NT_008438	AL135787	102625927	3	RH12061	9	356.13					1		AL135787
S/G/Y/R/B/O	NT_008438	AL356491	102674409	3
S/G/Y/R/B/O	NT_008438	AL354877	102751393	3	RH62935	9	355.83					1		AC016990, AL354877
S/G/Y/R/B/O	NT_008438	AL354877	102751393	3	SGC38204					9	429.10	1		AC016990, AL354877
S/G/Y/R/B/O	NT_008438	AL354877	102766525	3	RH40332	9	357.94					1		AC016990, AL354877
S/G/Y/R/B/O	NT_008438	AL442066	102888814	3	RH68280	9	356.13					1		AC016990, AL442066

NT_008438 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_008438	AL442066	102889266	3	RH103739	9	356.13					1		AC016990, AL442066
S/G/Y/R/B/O	NT_008438	AL442066	102890928	3	RH11495	9	356.13					1		AC016990, AL442066
S/G/Y/R/B/O	NT_008438	AL138756	102988385	3	RH62716	9	355.52			9	422.70	1		AC010824, AL138756
S/G/Y/R/B/O	NT_008438	AL138756	102994247	3	RH26869	9	367.45					1		AC010824, AL138756
S/G/Y/R/B/O	NT_008438	AL138756	102996607	3	RH1934			9	3684.00			1		AC010824, AL138756
S/G/Y/R/B/O	NT_008438	AL138756	102996622	3	RH18316	9	356.13					1		AC010824, AL138756
S/G/Y/R/B/O	NT_008438	AL138756	102996777	3	RH1357			9	3675.00			1		AC010824, AL138756
S/G/Y/R/B/O	NT_008438	AL138756	102996846	3	RH47130	9	355.73					1		AC010824, AL138756
S/G/Y/R/B/O	NT_008438	AL158824	103136790	3	RH31112			9	3689.00			1		AC073213, AL158824, AL355533
S/G/Y/R/B/O	NT_008438	AL158824	103157998	3	RH92250	9	355.73					1		AC073213, AL158824
S/G/Y/R/B/O	NT_008438	AL158824	103174997	3	RH102286	9	356.13					1		AC073213, AL158824
S/G/Y/R/B/O	NT_008438	AL158824	103176836	3	RH63210	9	356.03					1		AL158824
S/G/Y/R/B/O	NT_008438	AL158824	103176836	3	WI-18346					9	432.30	1		AL158824
S/G/Y/R/B/O	NT_008438	AL158824	103228058	3	RH26514	9	356.13					1
S/G/Y/R/B/O	NT_008438	AL158824	103245022	3	RH62805	9	355.73			9	425.70	1		AL158824
S/G/Y/R/B/O	NT_008438	AL158824	103268329	3	RH103623	9	345.93					1		AL158824
S/G/Y/R/B/O	NT_008438	AL359073	103319422	3	RH63047	9	355.62					1		AL359073
S/G/Y/R/B/O	NT_008438	AL359073	103319422	3	IB656					9	432.40	1		AL359073
S/G/Y/R/B/O	NT_008438	AL359073	103319422	3	RH1439			9	3689.00			1		AL359073
S/G/Y/R/B/O	NT_008438	AL162732	103373311	3	RH45928	9	355.73					1		AL162732
S/G/Y/R/B/O	NT_008438	AL162732	103427342	3	RH62967	9	356.13					2	AC016904,	AC016904, AL162732
S/G/Y/R/B/O	NT_008438	AL162732	103427342	3	TIGR-A004Y48					9	429.10	2	AC016904,	AC016904, AL162732
S/G/Y/R/B/O	NT_008438	AL162732	103427981	3	RH8854			9	3694.00			2	AC016904,	AC016904, AL162732
S/G/Y/R/B/O	NT_008438	AL162732	103429741	3	CHLC.GATA48D07					9	429.10	2	AC016904,	AC016904, AL162732
S/G/Y/R/B/O	NT_008438	AL162732	103431187	3	RH62784	9	356.13					1		AL162732
S/G/Y/R/B/O	NT_008438	AL162732	103431187	3	WI-22620					9	429.10	1		AL162732
S/G/Y/R/B/O	NT_008438	AL445187	103540353	3	RH93310	9	356.13					2	AC016904,	AC016904, AC067868, AL390202, AL445187
S/G/Y/R/B/O	NT_008438	AL445187	103576355	3	RH48718	9	356.13					1		AC025899, AC067868, AL445187
S/G/Y/R/B/O	NT_008438	AL445187	103584935	3	RH69993	9	356.13					1		AC025899, AC067868, AL445187
S/G/Y/R/B/O	NT_008438	AL390067	103611588	3	RH8784			9	3718.00			1		AC025899, AC067868, AL390067
S/G/Y/R/B/O	NT_008438	AL390067	103616963	3	RH62790	9	356.13					1		AC025899, AC067868, AL390067
S/G/Y/R/B/O	NT_008438	AL390067	103616963	3	WI-22223					9	429.10	1		AC025899, AC067868, AL390067
S/G/Y/R/B/O	NT_008438	AL390067	103620828	3	RH92524	9	356.13					1		AC025899, AC067868, AL390067
S/G/Y/R/B/O	NT_008438	AL390067	103624699	3	WI-3584					9	430.80	1		AC025899, AC067868, AL390067
S/G/Y/R/B/O	NT_008438	AL390067	103624950	3	RH78699	9	356.13					1		AC025899, AC067868, AL390067
S/G/Y/R/B/O	NT_008438	AL390067	103642889	3	RH38178			9	3723.00			1		AC025899, AC067868, AL390067
S/G/Y/R/B/O	NT_008438	AL390067	103643066	3	RH91235	9	356.13					1		AC025899, AC067868, AL390067
S/G/Y/R/B/O	NT_008438	AL390067	103674924	3	RH104418	9	356.13					1		AC025899, AL390067
S/G/Y/R/B/O	NT_008438	AL360235	103707913	3
S/G/Y/R/B/O	NT_008438	AL139041	103806052	3	WI-4791					9	426.90	1		AL139041
S/G/Y/R/B/O	NT_008438	AL139041	103819564	3	WI-5414					9	429.10	1		AL139041
S/G/Y/R/B/O	NT_008438	AL139041	103829634	3	RH99025	9	356.13					1		AL139041
S/G/Y/R/B/O	NT_008438	AL162588	103953140	3	RH66615	9	355.73					1		AL162588
S/G/Y/R/B/O	NT_008438	AL162588	103954128	3	RH103221	9	355.73					1		AL162588
S/G/Y/R/B/O	NT_008438	AL162588	103997960	3	RH103443	9	356.13					1		AL162588
S/G/Y/R/B/O	NT_008438	AL162588	104014891	3	D9S174					9	433.70	1		AL162588
S/G/Y/R/B/O	NT_008438	AL162588	104014928	3	RH13365	9	355.73	9	3740.00			1		AL162588
S/G/Y/R/B/O	NT_008438	AC011653	104019535	1
S/G/Y/R/B/O	NT_008438		-		RH26761	9	356.13					0
S/G/Y/R/B/O	NT_008438		-		RH40410	9	355.45					0

NT_008438 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_008438	-	RH66299	9	350.80
S/G/Y/R/B/O	NT_008438	-	RH71341	9	352.62
S/G/Y/R/B/O	NT_008438	-	RH79738	9	347.06	AL354661,	AL354661
S/G/Y/R/B/O	NT_008438	-	RH91266	9	356.13