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  Chromosome 9 - RH Maps - Single Contig
 

Chromosome 9 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_023974
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023974AL357615205001451RH40341977.22    1AL357614, AL357614, AL357615
S/G/Y/R/B/O NT_023974AL357615205001481RH36270973.58    1AL357614, AL357614, AL357615
S/G/Y/R/B/O NT_023974AL163528203844021          
S/G/Y/R/B/O NT_023974AL357614203895161          
S/G/Y/R/B/O NT_023974AL445624203948881          
S/G/Y/R/B/O NT_023974AL391667205659273          
S/G/Y/R/B/O NT_023974AL391117206762693          
S/G/Y/R/B/O NT_023974AL645734208342093          
S/G/Y/R/B/O NT_023974AC017067209513973RH1736  91016.00  1 AC017067, AL356116
S/G/Y/R/B/O NT_023974AC017067209791773RH65742181.89    1AL662924, AC017067, AL356116, AL662924
S/G/Y/R/B/O NT_023974AC017067210118163RH45917971.80    1 AC017067
S/G/Y/R/B/O NT_023974AL603704210984633          
S/G/Y/R/B/O NT_023974AL583802211377003          
S/G/Y/R/B/O NT_023974AL161730212378263          
S/G/Y/R/B/O NT_023974AL157937214077923          
S/G/Y/R/B/O NT_023974AL354709215716893RH630209419.63  9502.401AC068451, AC068451
S/G/Y/R/B/O NT_023974AL354709215717253RH404149434.56    1AC068451, AC068451, AL354709
S/G/Y/R/B/O NT_023974AL354709216281983WI-5735    965.101 AL354709
S/G/Y/R/B/O NT_023974AL354709216928763RH98818960.95    1 AL354709
S/G/Y/R/B/O NT_023974AL449423217243183RH40397969.52    1 AC000049, AL449423
S/G/Y/R/B/O NT_023974AL449423217576963RH103023960.95    1 AC000048
S/G/Y/R/B/O NT_023974AL449423217591803RH76270963.04    1 AC000048, AL449423
S/G/Y/R/B/O NT_023974AL449423217592603RH67869960.95    1 AC000048, AL449423
S/G/Y/R/B/O NT_023974AL449423217915193RH99034960.95    1 AC000047, AL449423
S/G/Y/R/B/O NT_023974AL359922218161633          
S/G/Y/R/B/O NT_023974AL355679219828193          
S/G/Y/R/B/O NT_023974AL137022220411943          
S/G/Y/R/B/O NT_023974AL353732222589803RH62748968.069733.00967.101 AL353732
S/G/Y/R/B/O NT_023974AL353732222590973RH68380962.98    1 AL353732
S/G/Y/R/B/O NT_023974AL353732222860803RH40361964.36    1 AL353732
S/G/Y/R/B/O NT_023974AL353732222861053RH62718962.98  963.701 AL353732
S/G/Y/R/B/O NT_023974AL353732223174863WI-9020    966.901 AL353732
S/G/Y/R/B/O NT_023974AL353732223174863RH63229958.53    1 AL353732
S/G/Y/R/B/O NT_023974AL353732223415833RH37703  9733.00  1 AL353732
S/G/Y/R/B/O NT_023974AL353732223427453RH40360968.06    1 AL353732
S/G/Y/R/B/O NT_023974AL353732223771053RH79925965.85    1 AL353732
S/G/Y/R/B/O NT_023974AL162420223952203RH45983962.98    1 AL162420
S/G/Y/R/B/O NT_023974AL162420223962203RH11920962.98    1 AL162420
S/G/Y/R/B/O NT_023974AL162420223973063RH25080962.98    1 AL162420
S/G/Y/R/B/O NT_023974AL162420224030023RH62990962.98  963.201 AL162420
S/G/Y/R/B/O NT_023974AL162420224227323RH62811967.76  963.301 AL162420
S/G/Y/R/B/O NT_023974AL162420224880533RH62720969.00  963.701 AL162420
S/G/Y/R/B/O NT_023974AL162420224880533RH70715964.15    5AL512606, AL512606, AL512606, AL162420, AL162420, AL512606, AL512606, AL512606, V00531, X02960
S/G/Y/R/B/O NT_023974AL162420224998153RH62797962.98  963.701 AL162420
S/G/Y/R/B/O NT_023974AL162420224998153RH70715964.15    5AL512606, AL512606, AL512606, AL162420, AL162420, AL512606, AL512606, AL512606, V00531, X02960
S/G/Y/R/B/O NT_023974AL162420224998313RH69109962.98    3AL512606, AL512606, AL162420, AL512606, AL512606, V00531, X02955
S/G/Y/R/B/O NT_023974AL512606225106833RH63194962.98  963.701 AL512606
S/G/Y/R/B/O NT_023974AL512606225106833RH70715964.15    5AL162420, AL162420, AL162420, AL162420, AL512606, AL512606, AL512606, V00531, X02960
S/G/Y/R/B/O NT_023974AL512606225208913RH70715964.15    5AL162420, AL162420, AL162420, AL162420, AL512606, AL512606, AL512606, V00531, X02960
S/G/Y/R/B/O NT_023974AL512606225209073RH69109962.98    3AL162420, AL162420, AL512606, AL512606, V00531, X02955


  NT_023974 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023974AL512606225212753RH47035962.98    2 AL512606, AL512606, V00531, X02955
S/G/Y/R/B/O NT_023974AL512606225258233RH70715964.15    5AL162420, AL162420, AL162420, AL162420, AL512606, AL512606, AL512606, V00531, X02960
S/G/Y/R/B/O NT_023974AL512606225404733RH69109962.98    3AL162420, AL162420, AL512606, AL512606, V00531, X02955
S/G/Y/R/B/O NT_023974AL512606225408503RH47035962.98    2 AL512606, AL512606, V00531, X02955
S/G/Y/R/B/O NT_023974AL390882225607611RH110841612.71    1 AL390882
S/G/Y/R/B/O NT_023974AL390882225613761RH62810962.789733.00  1 AL390882
S/G/Y/R/B/O NT_023974AL390882225613761SGC35276    962.001 AL390882
S/G/Y/R/B/O NT_023974AL390882226873631RH76439965.85    1AL662879, AL390882, AL662879
S/G/Y/R/B/O NT_023974AL390882227118641RH68030964.22    1AL662879, AL390882, AL662879
S/G/Y/R/B/O NT_023974AL390882227119231RH93561964.22    1AL662879, AL390882, AL662879
S/G/Y/R/B/O NT_023974AL662879227357531RH62933962.789735.00  1 AL662879
S/G/Y/R/B/O NT_023974AL662879227357531SGC30115    962.001 AL662879
S/G/Y/R/B/O NT_023974AL662879227392061RH67182965.95    1 AL662879
S/G/Y/R/B/O NT_023974AL662879227392481RH16145962.78    1 AL662879
S/G/Y/R/B/O NT_023974AL662879227394091RH26838958.93    1 AL662879
S/G/Y/R/B/O NT_023974AC018973227275451          
S/G/Y/R/B/O NT_023974AL392163227809343          
S/G/Y/R/B/O NT_023974AL445595229659381          
S/G/Y/R/B/O NT_023974AL354879230792363          
S/G/Y/R/B/O NT_023974AL627410231595063          
S/G/Y/R/B/O NT_023974AL163193232538653RH77943962.84    1 AL163193
S/G/Y/R/B/O NT_023974AL513498232817523          
S/G/Y/R/B/O NT_023974AL512635234242413RH11443964.22    1AL513498, AC002050, AL512635, AL513498, AL606844
S/G/Y/R/B/O NT_023974AL442637236518083          
S/G/Y/R/B/O NT_023974AL445623238327233          
S/G/Y/R/B/O NT_023974AL161628239880593          
S/G/Y/R/B/O NT_023974AL365204240984973          
S/G/Y/R/B/O NT_023974AL513317242275883          
S/G/Y/R/B/O NT_023974AL354777243679563          
S/G/Y/R/B/O NT_023974AL161724245187043          
S/G/Y/R/B/O NT_023974AL445241246493713          
S/G/Y/R/B/O NT_023974AL441928246923213          
S/G/Y/R/B/O NT_023974AL162232247994583RH15165976.92  972.201 AL162232, AP000379
S/G/Y/R/B/O NT_023974AL162232247994583RH1156  9999.00  1 AL162232, AP000379
S/G/Y/R/B/O NT_023974AL353811248251553          
S/G/Y/R/B/O NT_023974AL513333250138063          
S/G/Y/R/B/O NT_023974AL157830251370443WI-2415    977.401 AL157830
S/G/Y/R/B/O NT_023974AL157830251453703AFM220XF2    989.501 AL157830
S/G/Y/R/B/O NT_023974AL355975252915253RH65616971.70    1 AC021692, AL355975
S/G/Y/R/B/O NT_023974AL627260253446623          
S/G/Y/R/B/O NT_023974AL353772254534773          
S/G/Y/R/B/O NT_023974AL158074255675473          
S/G/Y/R/B/O NT_023974AL353730257236063RH30628  91030.00  1 AL353730
S/G/Y/R/B/O NT_023974AL590322258968903WI-11187    977.401 AL590322
S/G/Y/R/B/O NT_023974AL391475260152113WI-10400    977.401 AC003953
S/G/Y/R/B/O NT_023974AL391649261329413WI-3769    978.901 AC023574, AL391649
S/G/Y/R/B/O NT_023974AL353753261857203          
S/G/Y/R/B/O NT_023974AL356791264466923AFM218XG11    980.401 AL356791
S/G/Y/R/B/O NT_023974AL592226264656423          
S/G/Y/R/B/O NT_023974AL356156265649813          


  NT_023974 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023974AL590078266935793          
S/G/Y/R/B/O NT_023974AL442639268311441          
S/G/Y/R/B/O NT_023974AL451137269570433          
S/G/Y/R/B/O NT_023974AL356133271059323RH63030980.68  974.901 AL356133
S/G/Y/R/B/O NT_023974AL356133271061923RH62922972.12  985.001 AL356133
S/G/Y/R/B/O NT_023974AL356133271065253RH26332980.68    1 AL356133
S/G/Y/R/B/O NT_023974AL356133271705903RH62803980.68  975.001 AL356133
S/G/Y/R/B/O NT_023974AL355432272495781          
S/G/Y/R/B/O NT_023974AL355433273292023RH62848980.68  974.901 AL355433
S/G/Y/R/B/O NT_023974AL133411274963903RH9062  91126.00  1 AL133411
S/G/Y/R/B/O NT_023974AL163192275918633RH63054980.68  974.901 AL163192
S/G/Y/R/B/O NT_023974AL163192275918923RH26175980.52    1 AL163192
S/G/Y/R/B/O NT_023974AL163192275926373RH62800980.89  974.901 AL163192
S/G/Y/R/B/O NT_023974AL163192276330753WI-3557    975.101 AL163192
S/G/Y/R/B/O NT_023974AL451123277977823RH76491981.51    1 AC025611, AL139116, AL451123
S/G/Y/R/B/O NT_023974AL451123278023713RH92292985.37    1 AC025611, AL139116, AL451123
S/G/Y/R/B/O NT_023974AL451123278131903RH38026  91152.00  1 AC025611, AL139116, AL451123
S/G/Y/R/B/O NT_023974AL451123278274463RH62877990.29  982.701 AC025611, AL139116, AL451123
S/G/Y/R/B/O NT_023974AL451123278274463RH1365  91129.00  1 AC025611, AL139116, AL451123
S/G/Y/R/B/O NT_023974AL355585278916393RH28542987.69    1 AC025611, AL355585
S/G/Y/R/B/O NT_023974AL355585278989633RH13232985.3791131.00  1 AC025611, AL355585
S/G/Y/R/B/O NT_023974AL355585279375993RH47656985.37    1 AL355585
S/G/Y/R/B/O NT_023974AL162396279412353          
S/G/Y/R/B/O NT_023974AL360014281039972RH30627  91126.00  1 AL360014
S/G/Y/R/B/O NT_023974AL353746282042953RH9936987.08    1 AL353746
S/G/Y/R/B/O NT_023974AL353746282152843RH67176990.80    1 AL353746
S/G/Y/R/B/O NT_023974AL353746282152993RH15970992.86    1 AL353746
S/G/Y/R/B/O NT_023974AL451124284195703RH98626990.61    1 AL390250, AL451124
S/G/Y/R/B/O NT_023974AL596323284811143          
S/G/Y/R/B/O NT_023974AL353683286715213RH30625  91114.00  1 AL353683
S/G/Y/R/B/O NT_023974AL445526287670723          
S/G/Y/R/B/O NT_023974AL592206288940013          
S/G/Y/R/B/O NT_023974AL450428289494983          
S/G/Y/R/B/O NT_023974AL158072290323063          
S/G/Y/R/B/O NT_023974AL354758292330463          
S/G/Y/R/B/O NT_023974AL360180293255713          
S/G/Y/R/B/O NT_023974AL162388294027043          
S/G/Y/R/B/O NT_023974AL353684295764853          
S/G/Y/R/B/O NT_023974AL138893298263493CHLC.GATA12C06    9106.901 AC022901, AL138893
S/G/Y/R/B/O NT_023974AL354676298437863          
S/G/Y/R/B/O NT_023974AL513132300913433RH7138318352.01    2AB043547, AC040919, AB043547, AC040919, AC087687, AL355584, AL513132, AP001845, AP002401
S/G/Y/R/B/O NT_023974AL590672301263693RH155949103.5291198.00  1 AL355584, AL590672
S/G/Y/R/B/O NT_023974AL451045301529573          
S/G/Y/R/B/O NT_023974AL392110303196683WI-5505    9119.401 AL392110
S/G/Y/R/B/O NT_023974AL392110303890713WI-5612    9116.001 AC041036, AL392110
S/G/Y/R/B/O NT_023974AL390883304039493          
S/G/Y/R/B/O NT_023974AL159995304783021          
S/G/Y/R/B/O NT_023974AL353808306413523          
S/G/Y/R/B/O NT_023974AL354704306836143          
S/G/Y/R/B/O NT_023974AL390844308254913RH403839110.13    1 AL390844


  NT_023974 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023974AL390844309570693RH63442X326.61  X304.402AC022220, AL683813, AC022220, AL683813
S/G/Y/R/B/O NT_023974AL590726309759093          
S/G/Y/R/B/O NT_023974AL353735310867953          
S/G/Y/R/B/O NT_023974AL353745311326653          
S/G/Y/R/B/O NT_023974AL355582313055153          
S/G/Y/R/B/O NT_023974AL354854314193632          
S/G/Y/R/B/O NT_023974AL353783315869131          
S/G/Y/R/B/O NT_023974AL162728317213623          
S/G/Y/R/B/O NT_023974AL590676317285463          
S/G/Y/R/B/O NT_023974 - RH10566969.80    1AL356000, AL356000
S/G/Y/R/B/O NT_023974 - AFMB292XG5    995.401AL161788, AL162413, AL161788, AL162413
S/G/Y/R/B/O NT_023974 - RH13250965.95    1AL133281, AL133281
S/G/Y/R/B/O NT_023974 - RH40354967.76    1  
S/G/Y/R/B/O NT_023974 - RH44824971.91    0  
S/G/Y/R/B/O NT_023974 - RH63065965.95    1AL391834, AC109451, AL391834, M77232, X67309
S/G/Y/R/B/O NT_023974 - RH63074962.78    0  
S/G/Y/R/B/O NT_023974 - RH63106995.54  9120.300AC022220, AL683813, AC022220, AL390202, AL683813
S/G/Y/R/B/O NT_023974 - RH65357962.98    0  
S/G/Y/R/B/O NT_023974 - RH68989980.68    0  
S/G/Y/R/B/O NT_023974 - RH91650962.98    0  
S/G/Y/R/B/O NT_023974 - RH937489116.31    0  
S/G/Y/R/B/O NT_023974 - RH98191964.22    0