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  Chromosome 9 - RH Maps - Single Contig
 

Chromosome 9 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_027081
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_027081AL513423157610183RH40412959.13    3AF199339, AL359998, AL391335, AF199339, AL359998, AL391335, AL513423
S/G/Y/R/B/O NT_027081AL513423157617093RH92265959.13    2AF199339, AL359998, AF199339, AL359998, AL513423
S/G/Y/R/B/O NT_027081AL513423157682013RH16596959.13    2  
S/G/Y/R/B/O NT_027081AL662788159308903          
S/G/Y/R/B/O NT_027081AL359877160352533          
S/G/Y/R/B/O NT_027081AL160052162242913RH40377959.03    1 AL160052, AL592153, AL691495, AL691495
S/G/Y/R/B/O NT_027081AL160052162523513CHLC.GAAT2F06    960.301 AL160052, AL592153, AL691495, AL691495
S/G/Y/R/B/O NT_027081AL160052162562533RH62826959.03  960.301 AL160052, AL592153, AL691495, AL691495
S/G/Y/R/B/O NT_027081AL160052162681503RH40382959.03    1 AL160052, AL592153, AL691495, AL691495
S/G/Y/R/B/O NT_027081AL160053163113583RH13780  9640.00  1 AL160053, AL592153, AL691495
S/G/Y/R/B/O NT_027081AL160053163559983RH103985959.03    1 AL160053
S/G/Y/R/B/O NT_027081AL160053164540563RH40359959.03    1AL513424, AL160053, AL513424
S/G/Y/R/B/O NT_027081AL160053164629603WI-10873    960.301AL513424, AL160053, AL513424
S/G/Y/R/B/O NT_027081AL513424165350243GCT16G03    960.301AL449344, AL449344, AL513424
S/G/Y/R/B/O NT_027081AL513424165385753RH15022959.03  960.301AL449344, AL449344, AL513424
S/G/Y/R/B/O NT_027081AL449344166299791          
S/G/Y/R/B/O NT_027081AL646003166875723          
S/G/Y/R/B/O NT_027081AL449983167094861RH40357959.13    1 AL449983
S/G/Y/R/B/O NT_027081AL450003169682603WI-3899    963.601 AL450003
S/G/Y/R/B/O NT_027081AL450003169998033RH92550960.85    1 AL450003
S/G/Y/R/B/O NT_027081AL162418170617173RH48002960.95    1 AL162418
S/G/Y/R/B/O NT_027081AL450105170882903          
S/G/Y/R/B/O NT_027081AL358117172478073          
S/G/Y/R/B/O NT_027081AL162725173060913RH103887960.95    2AC023999, AC073492, AC023999, AC073492, AL162725, AL499603
S/G/Y/R/B/O NT_027081AL162725173564453WI-10810    962.102AC023999, AC073492, AC023999, AC073492, AL162725, AL499603
S/G/Y/R/B/O NT_027081AL354711174418172          
S/G/Y/R/B/O NT_027081AL354738176019433          
S/G/Y/R/B/O NT_027081AL590377176741613RH62639960.95  962.101 AC015640, AL590377
S/G/Y/R/B/O NT_027081AL133214179216663D9S157    962.101 AL133214
S/G/Y/R/B/O NT_027081AL133214179216663RH13217960.95    1 AL133214
S/G/Y/R/B/O NT_027081AL139115180828343RH12259960.95    1 AL139115
S/G/Y/R/B/O NT_027081AL139115180904283RH47487960.95    1 AL139115
S/G/Y/R/B/O NT_027081AL645565180931373          
S/G/Y/R/B/O NT_027081AL513502182374461          
S/G/Y/R/B/O NT_027081AL450004182463881RH68724962.34    1 AL450004
S/G/Y/R/B/O NT_027081AL450004182724171RH62712959.93  961.501AL513502, AL450004, AL513502
S/G/Y/R/B/O NT_027081AL513503183479311          
S/G/Y/R/B/O NT_027081AL512664184675583RH16851960.95    1AL513503, AL512664, AL513503, AP001983
S/G/Y/R/B/O NT_027081AL512664184692043RH63031960.95  962.101AL513503, AL512664, AL513503, AP001983
S/G/Y/R/B/O NT_027081AL512664184692223RH12063960.95    1AL513503, AL512664, AL513503, AP001983
S/G/Y/R/B/O NT_027081AL445674185824853CHLC.GATA27A11    962.101 AL445674
S/G/Y/R/B/O NT_027081AL442638186373633          
S/G/Y/R/B/O NT_027081AL449963188255101          
S/G/Y/R/B/O NT_027081AL353895190356772AFM154YD2    962.102 AC011701, AL353895
S/G/Y/R/B/O NT_027081AL591423190490863          
S/G/Y/R/B/O NT_027081AL158150191066313RH1799  9726.00  2 AC011701, AL158150
S/G/Y/R/B/O NT_027081AL158150192065993RH68954962.84    1 AL158150
S/G/Y/R/B/O NT_027081AL158150192240143RH92577962.78    1 AL158150
S/G/Y/R/B/O NT_027081AL356000193239083RH9882511167.87    1 AL356000
S/G/Y/R/B/O NT_027081AL356000193466863RH10252962.78    1 AL356000


  NT_027081 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_027081AL356000193468173RH10566969.80    1 AL356000
S/G/Y/R/B/O NT_027081AL591206193979513RH47086962.78    1 AL591206
S/G/Y/R/B/O NT_027081AL591206194119353RH40444964.22    1 AL591206
S/G/Y/R/B/O NT_027081AL161909194963153RH47306964.15    4AC004386, AC044812, AC067942, AC110420, AL391834, AC004386, AC044812, AC067942, AC109451, AC110420, AL161909, AL391834, AL590805, M77232, X67309
S/G/Y/R/B/O NT_027081AL161909195998603RH80524964.15    1AC044812, AC044812, AL161909, AL590805
S/G/Y/R/B/O NT_027081AL391834196685913RH47101964.22    1 AC109451, AL391834
S/G/Y/R/B/O NT_027081AL391834196695753WI-12519    962.101 AC109451, AL391834
S/G/Y/R/B/O NT_027081AL391834196695753RH62743964.15    1 AC109451, AL391834
S/G/Y/R/B/O NT_027081AL391834196722783RH47306964.15    4AC004386, AC044812, AC067942, AC110420, AL161909, AC004386, AC044812, AC067942, AC109451, AC110420, AL161909, AL391834, AL590805, M77232, X67309
S/G/Y/R/B/O NT_027081AL391834196750773WI-1403    962.101 AC109451, AL391834, M77232, X67309
S/G/Y/R/B/O NT_027081AL391834196750773RH63065965.95    1 AC109451, AL391834, M77232, X67309
S/G/Y/R/B/O NT_027081AL158206197482403RH40354967.76    1  
S/G/Y/R/B/O NT_027081AL158206197507313RH17844964.36    1 AC109451, AL158206
S/G/Y/R/B/O NT_027081AL158206198036783RH103060964.22    1 AC109451, AL158206
S/G/Y/R/B/O NT_027081AL133281199757653D9S162    962.101 AL133281
S/G/Y/R/B/O NT_027081AL133281199757653RH812  9741.00  1 AL133281
S/G/Y/R/B/O NT_027081AL133281199757653RH13250965.95    1 AL133281
S/G/Y/R/B/O NT_027081AL158077200512293          
S/G/Y/R/B/O NT_027081AL591222202091211          
S/G/Y/R/B/O NT_027081AC044812202230141          
S/G/Y/R/B/O NT_027081 - RH103766959.03    0  
S/G/Y/R/B/O NT_027081 - RH38187  9611.00  1AC009563, AF181897, AC009563, AF181897, L76937
S/G/Y/R/B/O NT_027081 - WI-15647    962.000  
S/G/Y/R/B/O NT_027081 - RH28409959.03    0