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  Chromosome 9 - RH Maps - Single Contig
 

Chromosome 9 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_008338
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008338AC0111561214298151          
S/G/Y/R/B/O NT_008338AL3548981215586272RH1932  94602.00  1AC011156, AC011156, AL354898, AL603629, AY034076
S/G/Y/R/B/O NT_008338AL3548981215587482RH8687  94609.00  1AC011156, AC011156, AL354898, AL603629, AY034076
S/G/Y/R/B/O NT_008338AL3536951216667913RH940979401.19    1AC011156, AC011156, AL353695
S/G/Y/R/B/O NT_008338AL3590921217093451RH31120  94621.00  1 AC015497, AL357893, AL357893, AL359092
S/G/Y/R/B/O NT_008338AL3590921217887491WI-11508    9482.101 AC015497, AL357893, AL359092, U07561
S/G/Y/R/B/O NT_008338AL3590921217887491RH630269401.23    1 AC015497, AL357893, AL359092, U07561
S/G/Y/R/B/O NT_008338AL3590921217992561RH1035129401.19    1 AC015497, AL357893, AL359092, M17310
S/G/Y/R/B/O NT_008338AL1617331219249913WI-12399    9482.101 AL161733, U07563
S/G/Y/R/B/O NT_008338AL1617331219249913RH631549401.50    1 AL161733, U07563
S/G/Y/R/B/O NT_008338AL1617331219251453RH671559401.19    1 AL161733, U07563
S/G/Y/R/B/O NT_008338AL1617331219721723RH694299401.12    1AL583807, AL161733, AL583807, U07563
S/G/Y/R/B/O NT_008338AL1617331219723273RH800139395.69    1AL583807, AL161733, AL583807, U07563
S/G/Y/R/B/O NT_008338AL1617331219807353RH489859401.12    1AL583807, AL161733, AL583807
S/G/Y/R/B/O NT_008338AL5838071220380192          
S/G/Y/R/B/O NT_008338AL3558721221765843RH631369402.54  9483.601AL157938, AL157938
S/G/Y/R/B/O NT_008338AL1579381222058633RH262629403.90    1  
S/G/Y/R/B/O NT_008338AL1579381222059143RH181789402.54    1 AL157938
S/G/Y/R/B/O NT_008338AL1579381222076293RH626989402.54  9483.601 AL157938
S/G/Y/R/B/O NT_008338AL1579381222078533RH629819402.54  9483.601 AL157938
S/G/Y/R/B/O NT_008338AL1579381222079033RH249539402.54    1 AL157938
S/G/Y/R/B/O NT_008338AL1579381222828683RH252619403.79    1 AL157938
S/G/Y/R/B/O NT_008338AL1579381222894673RH680809402.54    1 AL157938
S/G/Y/R/B/O NT_008338AL1579381223120893RH699849402.54    1 AL157938, AL158039
S/G/Y/R/B/O NT_008338AL1579381223194023RH657439403.90    1 AL157938, AL158039
S/G/Y/R/B/O NT_008338AL1579381223451063RH419489404.00    1 AL157938, AL158039
S/G/Y/R/B/O NT_008338AL3548551223939443RH417779402.54    1 AC092146, AL158039, AL354855
S/G/Y/R/B/O NT_008338AL3587811225811032RH473439404.00    1 AL358781
S/G/Y/R/B/O NT_008338AL3587811225828812RH98849404.00    1 AL358781
S/G/Y/R/B/O NT_008338AL3587811225829132RH159799404.00    1 AL358781
S/G/Y/R/B/O NT_008338AL3587811225834762RH1236  94811.00  1 AL358781
S/G/Y/R/B/O NT_008338AL3587811226084892RH8039  94816.00  1 AL358781
S/G/Y/R/B/O NT_008338AL3587811226085412RH256919404.00    1 AL358781
S/G/Y/R/B/O NT_008338AL3587811226087352RH8595  94823.00  1 AL358781
S/G/Y/R/B/O NT_008338AL3587811226087502RH256119404.00    1 AL358781
S/G/Y/R/B/O NT_008338AL3587811226087542NIB247    9485.201 AL358781
S/G/Y/R/B/O NT_008338AL3587811226096362RH1042569404.00    1 AL358781
S/G/Y/R/B/O NT_008338AL3587811226107162RH164289403.90    1 AL358781
S/G/Y/R/B/O NT_008338AL1602761226617383RH13861  94806.00  1 AL160276
S/G/Y/R/B/O NT_008338AL1602761226617503RH117219403.90    1 AL160276
S/G/Y/R/B/O NT_008338AL1602761226618003RH249879404.00    1 AL160276
S/G/Y/R/B/O NT_008338AL1602761226640103RH403249403.90    1 AL160276
S/G/Y/R/B/O NT_008338AL1602761227453853RH629099403.7994801.009485.201 AL160276
S/G/Y/R/B/O NT_008338AL1602761227454173RH164869403.90    1 AL160276
S/G/Y/R/B/O NT_008338AL1602761227484203RH485159404.00    1 AL160276
S/G/Y/R/B/O NT_008338AL1602761227614773WI-4932    9487.101 AL160276
S/G/Y/R/B/O NT_008338AL1602711227943463RH657809405.32    1 AL160271
S/G/Y/R/B/O NT_008338AL1602711227999543RH703089405.53    1 AL160271
S/G/Y/R/B/O NT_008338AL6036491230212813RH630159407.14  9488.801AL713892, AL603649, AL713892
S/G/Y/R/B/O NT_008338AL7138921230241451          


  NT_008338 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008338AL6915061230532101          
S/G/Y/R/B/O NT_008338AL5131021230709923          
S/G/Y/R/B/O NT_008338AL3536311232139253          
S/G/Y/R/B/O NT_008338AL1599971233393493RH167749407.14    1 AL159997
S/G/Y/R/B/O NT_008338AL1599971233565663RH14286  94689.00  1 AL159997
S/G/Y/R/B/O NT_008338AL1599971233570143RH109399405.53    1 AL159997
S/G/Y/R/B/O NT_008338AL1599971233582323RH2701510541.46    1 AL159997
S/G/Y/R/B/O NT_008338AL1599971233590163RH627249407.14  9489.001 AL159997
S/G/Y/R/B/O NT_008338AL1599971233590783RH917969407.14    1 AL159997
S/G/Y/R/B/O NT_008338AL3537011234707113RH659569407.14    1 AL353701
S/G/Y/R/B/O NT_008338AL3547351236566693RH744769407.14    1 AL354735
S/G/Y/R/B/O NT_008338AL3547351236895513RH487409407.24    1 AC015488, AL354735
S/G/Y/R/B/O NT_008338AL1601651237151233RH630949407.24  9490.701 AC015488, AL160165
S/G/Y/R/B/O NT_008338AL1601651237178263RH671589407.14    1 AC015488, AL160165
S/G/Y/R/B/O NT_008338AL1601651237217863RH628649407.24  9490.001 AC015488, AL160165
S/G/Y/R/B/O NT_008338AL1601651237743983RH260709407.14    1 AC015488, AL160165
S/G/Y/R/B/O NT_008338AL1601651237856573RH403369407.14    1 AC015488, AL160165, AL161726
S/G/Y/R/B/O NT_008338AL1601651237884473RH403759407.14    1 AC015488, AL160165, AL161726
S/G/Y/R/B/O NT_008338AL1601651237888513RH629549407.14  9490.001 AC015488, AL160165, AL161726
S/G/Y/R/B/O NT_008338AL1601651237899313RH628619407.14  9490.001 AC015488, AL160165, AL161726
S/G/Y/R/B/O NT_008338AL4456451238763733RH631489410.89    1 AC000392, AL161726, AL445645
S/G/Y/R/B/O NT_008338AL4456451238763733SGC31362    9494.101 AC000392, AL161726, AL445645
S/G/Y/R/B/O NT_008338AL4456451239317923RH33454  94803.00  1 AL161726, AL445645
S/G/Y/R/B/O NT_008338AL4456451239319413RH403499410.59    1 AL161726, AL445645
S/G/Y/R/B/O NT_008338AL4456451239825923RH286669410.89    1 AC002096, AL445645
S/G/Y/R/B/O NT_008338AL4456451239865173RH358159410.59    1 AC002096, AL445645
S/G/Y/R/B/O NT_008338AL4456451239865173RH761199410.79    1 AC002096, AL445645
S/G/Y/R/B/O NT_008338AL4456451239910883RH758199409.35    1 AC002096, AL445645
S/G/Y/R/B/O NT_008338AL4456451240049803RH987429410.89    1 AL445645
S/G/Y/R/B/O NT_008338AL5938511240724943WI-6083    9492.301 AC000393, AL593851
S/G/Y/R/B/O NT_008338AL5938511240865673RH465459408.74    1 AC000393, AL593851
S/G/Y/R/B/O NT_008338AL5938511240865873RH760289410.79    1 AC000393, AL593851
S/G/Y/R/B/O NT_008338AL5938511241161213CHLC.ATA25F10    9494.101 AC000394, AL593851
S/G/Y/R/B/O NT_008338AL1624171241533363RH160159410.89    2AF072711, AC000394, AF072711
S/G/Y/R/B/O NT_008338AL1624171241930793RH119819410.86    1 AC000395
S/G/Y/R/B/O NT_008338 - RH266039404.00    0AL354855, AL354855
S/G/Y/R/B/O NT_008338 - RH1018  94706.00  0  
S/G/Y/R/B/O NT_008338 - RH471059407.14    0  
S/G/Y/R/B/O NT_008338 - RH1153  94734.00  1AL593848, AL593848
S/G/Y/R/B/O NT_008338 - RH656899410.89    0  
S/G/Y/R/B/O NT_008338 - RH31121  94766.00  1AL354796, AL354796, AL683798
S/G/Y/R/B/O NT_008338 - RH778529410.89    0  
S/G/Y/R/B/O NT_008338 - RH32259  94716.00  1AL590710, AP001637, AC002297, AL365494, AL590710, AP001637
S/G/Y/R/B/O NT_008338 - RH784139410.79    0  
S/G/Y/R/B/O NT_008338 - RH32347  94814.00  1AL133548, AL133548
S/G/Y/R/B/O NT_008338 - RH787539408.74    0  
S/G/Y/R/B/O NT_008338 - RH38177  94823.00  0  
S/G/Y/R/B/O NT_008338 - RH8597  94727.00  1AL158826, AL593848, AC002099, AC004530, AL158826, AL593848, Y17214