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  Chromosome 9 - RH Maps - Single Contig
 

Chromosome 9 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_023935
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023935AC024486698414611          
S/G/Y/R/B/O NT_023935AL354700698490983          
S/G/Y/R/B/O NT_023935AL353705700385563WI-9419    9308.801 AL353705
S/G/Y/R/B/O NT_023935AL353705700385563RH631719266.11    1 AL353705
S/G/Y/R/B/O NT_023935AL353705700385583RH265099266.50    1 AL353705
S/G/Y/R/B/O NT_023935AL353705700432953RH780429266.32    1 AL353705
S/G/Y/R/B/O NT_023935AL353705700497683RH679849266.01    1 AL353705
S/G/Y/R/B/O NT_023935AL353594700635913          
S/G/Y/R/B/O NT_023935AL592448701585823          
S/G/Y/R/B/O NT_023935AL445684701605763          
S/G/Y/R/B/O NT_023935AL592221702986673          
S/G/Y/R/B/O NT_023935AL592047705949863WI-4398    9305.901 AL353690, AL592047
S/G/Y/R/B/O NT_023935AL354675707381543RH783  92523.00  1 AL354675
S/G/Y/R/B/O NT_023935AL354675707381543RH131919264.50    1 AL354675
S/G/Y/R/B/O NT_023935AL359642707810483          
S/G/Y/R/B/O NT_023935AL512634709380833AFMA101XD1    9308.801 AL512634
S/G/Y/R/B/O NT_023935AL160166710257253D9S1780    9308.801 AL160166
S/G/Y/R/B/O NT_023935AL160166710257253RH630399266.11    1 AL160166
S/G/Y/R/B/O NT_023935AL450243711324303          
S/G/Y/R/B/O NT_023935AL358975712046673WI-9975    9308.801 AL358975, AL442129
S/G/Y/R/B/O NT_023935AL358975713461083RH403789267.54    1 AL358975
S/G/Y/R/B/O NT_023935AL445252713941753          
S/G/Y/R/B/O NT_023935AL353813714982493RH444849266.01    1 AL353813
S/G/Y/R/B/O NT_023935AL161912716068883RH31102  92503.00  1 AC023067, AL161912
S/G/Y/R/B/O NT_023935AL161782717073423          
S/G/Y/R/B/O NT_023935AL160168717827412          
S/G/Y/R/B/O NT_023935AL161780719319433          
S/G/Y/R/B/O NT_023935AL354937720410983WI-11909    9308.801 AL354937
S/G/Y/R/B/O NT_023935AL354937720410983RH629299266.21    1 AL354937
S/G/Y/R/B/O NT_023935AL354937721251203CHLC.GATA21F05    9308.801 AL354937
S/G/Y/R/B/O NT_023935AL354937721275233SGC33654    9308.801 AL354937
S/G/Y/R/B/O NT_023935AL354937721275233RH632029266.01    1 AL354937
S/G/Y/R/B/O NT_023935AL354937721276623RH165929266.01    1 AL354937
S/G/Y/R/B/O NT_023935AL390788722746883AFM273VB1    9308.801 AC011876, AL390788
S/G/Y/R/B/O NT_023935AL160267722825403          
S/G/Y/R/B/O NT_023935AL353707724388553          
S/G/Y/R/B/O NT_023935AL138749725641283          
S/G/Y/R/B/O NT_023935AL354682727961843CHLC.GATA63A07    9310.601 AL354682
S/G/Y/R/B/O NT_023935AL353666728589593          
S/G/Y/R/B/O NT_023935AL445672729957333RH630389268.36  9310.601 AL445672
S/G/Y/R/B/O NT_023935AL162397730317883          
S/G/Y/R/B/O NT_023935AL161727731517513          
S/G/Y/R/B/O NT_023935AL353682733556153RH105429269.72    1 AL353682
S/G/Y/R/B/O NT_023935AL353682733559023RH630559268.31  9312.201 AL353682
S/G/Y/R/B/O NT_023935AL365190734365203RH182089268.31    1 AC023268, AL355380, AL365190
S/G/Y/R/B/O NT_023935AL365190734451113RH629989268.31    1 AC023268, AL355380, AL365190
S/G/Y/R/B/O NT_023935AL365190734451113WI-11585    9307.201 AC023268, AL355380, AL365190
S/G/Y/R/B/O NT_023935AL591368734875593          
S/G/Y/R/B/O NT_023935AL158154735953232RH991629268.31    1 AL158154, AL355380
S/G/Y/R/B/O NT_023935AL355985737222103          


  NT_023935 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023935AL158047738425933RH8082411365.98    2AP003027, AC009636, AL158047, AP003027
S/G/Y/R/B/O NT_023935AL357032740326373CHLC.GATA3D04    9312.201 AL357032
S/G/Y/R/B/O NT_023935AL162726740982462          
S/G/Y/R/B/O NT_023935AL356490742920703          
S/G/Y/R/B/O NT_023935AL353774743367463          
S/G/Y/R/B/O NT_023935AL133391745943423RH135329272.9592633.00  1 AL133391
S/G/Y/R/B/O NT_023935AL359202746196583          
S/G/Y/R/B/O NT_023935AL499602747390833RH700569272.95    1 AL499602
S/G/Y/R/B/O NT_023935AL499602747650003WI-11205    9315.401 AL499602
S/G/Y/R/B/O NT_023935AL499602748255023RH930939272.95    1 AL499602
S/G/Y/R/B/O NT_023935AL671136749084903          
S/G/Y/R/B/O NT_023935AL137847750013583RH682759273.05    1 AL137847
S/G/Y/R/B/O NT_023935AL137847750464233RH928799271.03    1 AL137847
S/G/Y/R/B/O NT_023935AL161786751081982CHLC.GATA22H04    9315.401 AC012232, AL161786
S/G/Y/R/B/O NT_023935AL353641752118183          
S/G/Y/R/B/O NT_023935AL450026752473953RH861  92664.00  1 AL450026
S/G/Y/R/B/O NT_023935AL354920754001793RH991189272.95    1 AL354920
S/G/Y/R/B/O NT_023935AL354920754023183RH14332  92668.00  1 AL354920
S/G/Y/R/B/O NT_023935AL354920754166293RH914629272.95    1 AL354920
S/G/Y/R/B/O NT_023935AL354920754175893RH627589272.95  9315.401 AL354920
S/G/Y/R/B/O NT_023935AL354920754177923RH943629272.95    1 AL354920
S/G/Y/R/B/O NT_023935AL354920754688783RH629599271.24  9317.301 AL354920
S/G/Y/R/B/O NT_023935AL662787754962543RH265179274.97    1 AL662787
S/G/Y/R/B/O NT_023935AL662787755137143RH163419274.87    1 AL662787
S/G/Y/R/B/O NT_023935AL354733755822873RH31104  92677.00  1 AL354733
S/G/Y/R/B/O NT_023935AL354733757248373RH629419270.93  9317.201AC012279, AC012279, AC098854, AL354733
S/G/Y/R/B/O NT_023935AC012279757605061RH785359276.53    1 AC012279, AC098854
S/G/Y/R/B/O NT_023935AC012279757605371RH74594  92645.00  1 AC012279, AC098854
S/G/Y/R/B/O NT_023935AL390838757713983          
S/G/Y/R/B/O NT_023935AL356134759651073          
S/G/Y/R/B/O NT_023935AL353787760528103          
S/G/Y/R/B/O NT_023935AL157886762296743RH404049274.97    1 AL157886
S/G/Y/R/B/O NT_023935AL354692762894043          
S/G/Y/R/B/O NT_023935AL390777765691923RH460899274.77    1 AC007524, AL390777
S/G/Y/R/B/O NT_023935AL390777765717943RH167739274.97    1 AC007524, AL390777
S/G/Y/R/B/O NT_023935AL390777765718363RH629629275.59  9316.701 AC007524, AL390777
S/G/Y/R/B/O NT_023935AL390777765718683RH267789270.73    1 AC007524, AL390777
S/G/Y/R/B/O NT_023935AL390777765720963RH930059269.78    1 AC007524, AL390777
S/G/Y/R/B/O NT_023935AL596132766342633RH116579271.24    1 AC007524, AL596132
S/G/Y/R/B/O NT_023935AL596132766854573RH1026359274.77    1 AC007524, AL596132
S/G/Y/R/B/O NT_023935AL445532767780893RH9083  92753.00  1 AC024515, AL445532
S/G/Y/R/B/O NT_023935AL445532767802893RH271109269.72    1 AC024515, AL445532
S/G/Y/R/B/O NT_023935AL445532767815083RH168259274.77    1 AC024515, AL445532
S/G/Y/R/B/O NT_023935AL445532767819513RH628579274.77  9316.701 AC024515, AL445532
S/G/Y/R/B/O NT_023935AL445532767824173RH631089274.8792764.009316.701 AC024515, AL445532
S/G/Y/R/B/O NT_023935AL445532767834733RH260469274.87    1 AC024515, AL445532
S/G/Y/R/B/O NT_023935AL354897769022693RH1032419271.24    1 AC024515, AL354897
S/G/Y/R/B/O NT_023935AL159991769985323          
S/G/Y/R/B/O NT_023935AL583827770285053          
S/G/Y/R/B/O NT_023935AL451132772334393CHLC.GATA11E11    9320.001 AL451132


  NT_023935 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023935AL451131772983683RH181709276.53    1 AL451131
S/G/Y/R/B/O NT_023935AL451131773032493RH991729276.53    1 AL451131
S/G/Y/R/B/O NT_023935AL451131773036173RH119009276.42    1 AL451131
S/G/Y/R/B/O NT_023935AL451131773083383RH630419276.53  9318.301 AL451131
S/G/Y/R/B/O NT_023935AL451131773084123RH167489276.53    1 AL451131
S/G/Y/R/B/O NT_023935AL451131773102433RH258519276.53    1 AL451131
S/G/Y/R/B/O NT_023935AL157882773679181RH653549276.53    1 AL157882
S/G/Y/R/B/O NT_023935AL353743775461163RH751169277.51    1 AL353743
S/G/Y/R/B/O NT_023935AL161453777044813          
S/G/Y/R/B/O NT_023935AL161447777813323RH404649278.89    1 AL161447
S/G/Y/R/B/O NT_023935AL161447777827963RH628859277.36  9321.301 AL161447
S/G/Y/R/B/O NT_023935AL161447777828933RH100439278.81    1 AL161447
S/G/Y/R/B/O NT_023935AL161447777844163RH764519277.26    1 AL161447
S/G/Y/R/B/O NT_023935AL161447778851863RH922939278.81    1 AL161447
S/G/Y/R/B/O NT_023935AL450106778955313          
S/G/Y/R/B/O NT_023935AL137849780444003RH174229278.81    1 AL137849
S/G/Y/R/B/O NT_023935AL137849780444353RH403239278.81    1 AL137849
S/G/Y/R/B/O NT_023935AL137849780445433RH419599278.81    1 AL137849
S/G/Y/R/B/O NT_023935AL137849780526553RH1027539278.81    1 AL137849
S/G/Y/R/B/O NT_023935AL353678780802033RH676139278.81    1 AC009657, AL353678
S/G/Y/R/B/O NT_023935AL158828781415183          
S/G/Y/R/B/O NT_023935AL353613783713833WI-9905    9323.901 AL353613
S/G/Y/R/B/O NT_023935AL159996784653463RH495159280.4392813.00  1 AL159996
S/G/Y/R/B/O NT_023935AL159996784914513WI-3807    9323.901 AL159996
S/G/Y/R/B/O NT_023935AL158149787002203RH984179277.36    1 AL158149
S/G/Y/R/B/O NT_023935AL158149787010123RH629689279.62  9321.801 AL158149
S/G/Y/R/B/O NT_023935AL158149787012863RH403639281.84    1 AL158149
S/G/Y/R/B/O NT_023935AL158149787080543RH931009280.33    1 AC011168, AL158149
S/G/Y/R/B/O NT_023935AL513318787631882RH31106  92821.00  1 AL513318
S/G/Y/R/B/O NT_023935AL513318787651732RH118619280.33    1 AL513318
S/G/Y/R/B/O NT_023935AL513318787696072RH679389280.43    1AC093420, AL139289, AC093420, AL139289, AL355488, AL355519, AL356007
S/G/Y/R/B/O NT_023935AL513318788610572RH366039282.04    1 AC021249, AL513318
S/G/Y/R/B/O NT_023935AL158205789160793RH627409280.33  9323.901 AC016248, AC021249, AL158205
S/G/Y/R/B/O NT_023935AL136367789874823RH1035979280.33    1 AC016248, AL136367
S/G/Y/R/B/O NT_023935AL353752791777582WI-10428    9325.602 AC114314, AL353752
S/G/Y/R/B/O NT_023935AL161787792753573RH456049280.43    2 AC114314, AL161787
S/G/Y/R/B/O NT_023935AL161787792927953RH627149280.3392829.009325.602 AC114314, AL161787
S/G/Y/R/B/O NT_023935AL161787792929053RH182209279.42    1 AC114314, AL161787
S/G/Y/R/B/O NT_023935AL161787793108033RH754319281.55    2 AC114314, AL161787
S/G/Y/R/B/O NT_023935AL591852793574713RH629889280.33  9325.602 AC114314, AL591852, AL645762
S/G/Y/R/B/O NT_023935AL160279794324693D9S257    9328.701 AL160279
S/G/Y/R/B/O NT_023935AL160279794324693RH151619287.70    1 AL160279
S/G/Y/R/B/O NT_023935AL160279794393403RH693069285.16    1 AL160279, AL645762
S/G/Y/R/B/O NT_023935AL160279794647913RH404609283.91    1 AL160279, AL645762
S/G/Y/R/B/O NT_023935AL160279794650323RH1332  92833.009328.701 AL160279, AL645762
S/G/Y/R/B/O NT_023935AL160279794650323RH627829285.36    1 AL160279, AL645762
S/G/Y/R/B/O NT_023935AL160279794877573RH630729284.5392833.009328.701 AL160279, AL645762
S/G/Y/R/B/O NT_023935 - RH102729274.77    0AL445532, AC024515, AL445532
S/G/Y/R/B/O NT_023935 - RH14136  92560.00  1AL160054, AL160054
S/G/Y/R/B/O NT_023935 - RH362869278.81    0AL137849, AL137849


  NT_023935 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023935 - RH404369280.53    0  
S/G/Y/R/B/O NT_023935 - RH924629280.53    0  
S/G/Y/R/B/O NT_023935 - RH925689272.85    0