Chromosome 9 - RH Maps - Single Contig

Chromosome 9 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033218	NT_008413	NT_027081	NT_023974	NT_030040	NT_033214	NT_030759	NT_030753
NT_033213	NT_033210	NT_008389	NT_033219	NT_033217	NT_029359	NT_033209	NT_033206
NT_033208	NT_033212	NT_033205	NT_033203	NT_031832	NT_033211	NT_033207	NT_008580
NT_023935	NT_028278	NT_023975	NT_023946	NT_023932	NT_024010	NT_033202	NT_008476
NT_033216	NT_008470	NT_008438	NT_017568	NT_029366	NT_008338	NT_031835	NT_017539
NT_008554	NT_023969	NT_030058	NT_019501	NT_033215	NT_024000	NT_023929	NT_023989

NT_008470

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_008470	AC007800	90787175	1
S/G/Y/R/B/O	NT_008470	AL136084	90840300	3	RH48142	9	318.07					1	AC007800,	AC007800, AL136084
S/G/Y/R/B/O	NT_008470	AL354923	90979311	3	RH38541			9	3300.00			1		AL354923
S/G/Y/R/B/O	NT_008470	AL354923	90993431	3	WI-4017					9	376.90	1		AL354923
S/G/Y/R/B/O	NT_008470	AL354923	91057082	3	RH63128	9	320.79			9	362.10	1		AL354923
S/G/Y/R/B/O	NT_008470	AL354923	91057231	3	RH91631	9	321.31					1		AL354923
S/G/Y/R/B/O	NT_008470	AL354923	91060327	3	RH9016			9	3307.00			1		AL354923
S/G/Y/R/B/O	NT_008470	AL162427	91118697	3	RH45434	9	323.13					1		AL162427
S/G/Y/R/B/O	NT_008470	AL162427	91121792	3	RH45113	9	324.95					1		AL162427
S/G/Y/R/B/O	NT_008470	AL162427	91139749	3	RH11448	9	323.03			9	364.00	1		AC027143, AL162427
S/G/Y/R/B/O	NT_008470	AL162427	91139749	3	RH62847	9	323.03	9	3337.00			1		AC027143, AL162427
S/G/Y/R/B/O	NT_008470	AL162427	91140063	3	RH69005	9	323.03					1		AC027143, AL162427
S/G/Y/R/B/O	NT_008470	AL162427	91143824	3	RH62942	9	322.43	9	3331.00	9	367.50	1		AC027143, AL162427
S/G/Y/R/B/O	NT_008470	AL162427	91143930	3	RH35823	9	323.13					1		AC027143, AL162427
S/G/Y/R/B/O	NT_008470	AL162427	91144296	3	RH45880	9	323.13					1		AC027143, AL162427
S/G/Y/R/B/O	NT_008470	AL162427	91149580	3	RH48229	9	325.55					1		AC027143, AL162427
S/G/Y/R/B/O	NT_008470	AL137067	91206870	3	RH80035	9	318.44					1		AC009830, AC027143, AL137067
S/G/Y/R/B/O	NT_008470	AL137067	91206873	3	RH102866	9	323.33					1		AC009830, AC027143, AL137067
S/G/Y/R/B/O	NT_008470	AL137067	91207889	3	RH48942	9	324.73					1		AC009830, AC027143, AL137067
S/G/Y/R/B/O	NT_008470	AL137067	91209106	3	RH78836	9	323.13					1		AC009830, AC027143, AL137067
S/G/Y/R/B/O	NT_008470	AL137067	91211535	3	RH62791	9	323.33	9	3307.00	9	367.50	1		AC009830, AC027143, AL137067
S/G/Y/R/B/O	NT_008470	AL137067	91213444	3	RH63139	9	323.13			9	367.80	1		AC009830, AC027143, AL137067
S/G/Y/R/B/O	NT_008470	AL137067	91220816	3	RH8849			9	3334.00			2	AC023232, AC074190,	AC009830, AC023232, AC027143, AC074190, AL137067
S/G/Y/R/B/O	NT_008470	AL137067	91286323	3	RH7366	9	323.23	9	3307.00	9	369.40	1		AC009830, AC027143, AL137067
S/G/Y/R/B/O	NT_008470	AL137067	91286323	3	RH246			9	3307.00			1		AC009830, AC027143, AL137067
S/G/Y/R/B/O	NT_008470	AL589846	91380580	3	RH44989	9	323.23					1		AL589846
S/G/Y/R/B/O	NT_008470	AL162394	91454208	3	RH17129	9	323.03					1		AL162394
S/G/Y/R/B/O	NT_008470	AL162394	91521007	3	WI-10515					9	363.20	1		AL162394
S/G/Y/R/B/O	NT_008470	AL138835	91562912	3
S/G/Y/R/B/O	NT_008470	AL359710	91805369	3	RH14792			9	3374.00			1		AC073459, AL359710, AL359985
S/G/Y/R/B/O	NT_008470	AL359710	91822463	3	RH93279	9	323.13					1		AC073459, AL359710
S/G/Y/R/B/O	NT_008470	AL359710	91824161	3	RH40462	9	323.13					1		AC073459, AL359710, AL359985
S/G/Y/R/B/O	NT_008470	AL358937	91857082	3	RH78307	9	325.85					1		AL358937
S/G/Y/R/B/O	NT_008470	AL358937	91959655	3	RH63140	9	323.13	9	3426.00	9	367.50	1		AC074343, AL358937
S/G/Y/R/B/O	NT_008470	AL358937	91960174	3	RH40434	9	323.13					1		AC074343, AL358937
S/G/Y/R/B/O	NT_008470	AL358937	91960341	3	RH62893	9	323.43	9	3443.00	9	369.40	1		AC074343, AL358937
S/G/Y/R/B/O	NT_008470	AL358937	91960524	3	RH47955	9	323.13					1		AC074343, AL358937
S/G/Y/R/B/O	NT_008470	AL358937	91962536	3	RH80962	9	323.53					1		AC074343, AL358937
S/G/Y/R/B/O	NT_008470	AL358937	91964641	3	RH93873	9	323.13					1		AC074343, AL358937
S/G/Y/R/B/O	NT_008470	AL358937	91964757	3	RH80299	9	320.69					1		AC074343, AL358937
S/G/Y/R/B/O	NT_008470	AL358937	91970367	3	RH40417	9	323.13					1		AC074343, AL358937
S/G/Y/R/B/O	NT_008470	AL358937	91971811	3	RH62730	9	324.73			9	369.40	1		AC074343, AL358937
S/G/Y/R/B/O	NT_008470	AL358937	91972983	3	RH26253	9	326.90					2	AC104005, AC104027,	AC074343, AC104005, AC104027, AL358937
S/G/Y/R/B/O	NT_008470	AL360084	91975456	3
S/G/Y/R/B/O	NT_008470	AL137072	92121090	3	RH66522	9	325.75					1		AL137072
S/G/Y/R/B/O	NT_008470	AL137072	92160538	3	RH26727	9	327.52					1		AL137072
S/G/Y/R/B/O	NT_008470	AL356798	92220395	3	RH93259	9	323.13					1		AL356798
S/G/Y/R/B/O	NT_008470	AL445214	92293642	3	RH69936	9	323.13					1		AL445214
S/G/Y/R/B/O	NT_008470	AL445214	92293711	3	RH63086	9	323.23	9	3475.00	9	369.40	1		AL445214
S/G/Y/R/B/O	NT_008470	AL445214	92295600	3	RH62829	9	322.83	9	3414.00	9	367.50	1		AL445214

NT_008470 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_008470	AL445214	92296582	3	RH16980	9	323.03					1		AL445214
S/G/Y/R/B/O	NT_008470	AL445214	92297692	3	RH12786	9	323.13					1		AL445214
S/G/Y/R/B/O	NT_008470	AL353805	92335610	1	RH69417	9	323.13					1		AL353805
S/G/Y/R/B/O	NT_008470	AL353805	92370511	1	D9S173					9	373.60	1		AL353805
S/G/Y/R/B/O	NT_008470	AL353805	92432525	1	RH48042	9	324.73					1		AL353793, AL353805
S/G/Y/R/B/O	NT_008470	AL353805	92445485	1	RH18541	9	323.23					1		AL353793, AL353805
S/G/Y/R/B/O	NT_008470	AL353805	92446574	1	RH25792	9	323.13					1		AL353793, AL353805
S/G/Y/R/B/O	NT_008470	AL353805	92446603	1	RH12057	9	323.13					1		AL353793, AL353805
S/G/Y/R/B/O	NT_008470	AL354917	92506486	3	WI-5802					9	363.80	1		AL353793, AL354917
S/G/Y/R/B/O	NT_008470	AL354917	92567832	3	RH26438	9	325.24					1		AL354917
S/G/Y/R/B/O	NT_008470	AL354917	92567874	3	RH47356	9	325.36					1		AL354917
S/G/Y/R/B/O	NT_008470	AL354917	92567876	3	RH47334	9	325.36					1		AL354917
S/G/Y/R/B/O	NT_008470	AL390876	92592259	3
S/G/Y/R/B/O	NT_008470	AL357293	92842257	3	WI-9913					9	385.20	1		AL357293
S/G/Y/R/B/O	NT_008470	AL162395	92878426	3
S/G/Y/R/B/O	NT_008470	AL357935	93045883	3	RH36912	9	328.31					1		AL357935
S/G/Y/R/B/O	NT_008470	AL161631	93150948	3	RH62824	9	327.06			9	366.30	1		AL161631
S/G/Y/R/B/O	NT_008470	AL359893	93279269	3	RH28323	9	327.06					1		AL359893
S/G/Y/R/B/O	NT_008470	AL359893	93299718	3	RH26699	9	327.06					1		AL359893
S/G/Y/R/B/O	NT_008470	AL359893	93315354	3	RH62947	9	327.79			9	367.70	1		AL359893
S/G/Y/R/B/O	NT_008470	AL359893	93315361	3	RH62757	9	326.69			9	392.30	1		AL359893
S/G/Y/R/B/O	NT_008470	AL359893	93315371	3	RH16816	9	327.06					1		AL359893
S/G/Y/R/B/O	NT_008470	AL359893	93315383	3	RH74580			9	3494.00			1		AL359893
S/G/Y/R/B/O	NT_008470	AL359893	93328271	3	RH31111			9	3494.00			1		AL359893
S/G/Y/R/B/O	NT_008470	AL359893	93336678	3	RH62759	9	327.27			9	366.30	1		AL359893
S/G/Y/R/B/O	NT_008470	AL359893	93351042	3	RH16182	9	327.06					2	AC010913,	AC010913, AL359893
S/G/Y/R/B/O	NT_008470	AL359893	93352214	3	RH45350	9	327.06					1		AL359893
S/G/Y/R/B/O	NT_008470	AL359893	93352705	3	RH63058	9	327.06	9	3400.00	9	366.30	1		AL359893
S/G/Y/R/B/O	NT_008470	AL359893	93352940	3	RH40365	9	326.96					1		AL359893
S/G/Y/R/B/O	NT_008470	AL353621	93379292	3	RH25061	9	329.20					1		AL353621
S/G/Y/R/B/O	NT_008470	AL353621	93400664	3	RH94369	9	327.06					1		AC002469, AF025772, AL353621
S/G/Y/R/B/O	NT_008470	AL353621	93411075	3	RH63064	9	327.06			9	366.30	1		AC002469, AL353621
S/G/Y/R/B/O	NT_008470	AL353621	93411906	3	RH11595	9	327.06					1		AC002469, AL353621, M15656
S/G/Y/R/B/O	NT_008470	AL353621	93414965	3	RH80895	9	328.10					1		AC002469, AL353621, M15656
S/G/Y/R/B/O	NT_008470	AL353621	93414968	3	RH40424	9	327.06					1		AC002469, AL353621, M15656
S/G/Y/R/B/O	NT_008470	AL353621	93415223	3	RH103288	9	327.06					1		AC002469, AL353621, M15656
S/G/Y/R/B/O	NT_008470	AL353621	93419716	3	RH46544	9	327.06					1		AC002469, AL353621, M15657
S/G/Y/R/B/O	NT_008470	AL353621	93461826	3	RH63189	9	328.62			9	392.80	1		AL353621
S/G/Y/R/B/O	NT_008470	AL353621	93463661	3	RH62747	9	327.21			9	366.30	1		AL353621
S/G/Y/R/B/O	NT_008470	AL353621	93466376	3	RH18341	9	327.06					1		AL353621
S/G/Y/R/B/O	NT_008470	AL353621	93493217	3	RH103282	9	327.06					1		AL353621
S/G/Y/R/B/O	NT_008470	AL591377	93559869	3	RH62705	9	326.27			9	367.40	1		AL137023, AL591377
S/G/Y/R/B/O	NT_008470	AL591377	93582177	3	RH91980	9	327.06					1		AL137023, AL591377
S/G/Y/R/B/O	NT_008470	AL356516	93672039	3
S/G/Y/R/B/O	NT_008470	AL133413	93766439	1
S/G/Y/R/B/O	NT_008470	AL360018	93940276	3	WI-4452					9	366.30	1		AL360018
S/G/Y/R/B/O	NT_008470	AL596454	93943051	3
S/G/Y/R/B/O	NT_008470	AL355588	94052801	3
S/G/Y/R/B/O	NT_008470	AL391867	94251762	3	RH104072	9	328.57					1		AL391867
S/G/Y/R/B/O	NT_008470	AL137021	94341909	3	AFM206YC7					9	364.90	2		AC009555, AL137021

NT_008470 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_008470	AL442644	94530625	3	RH47903	9	333.51			1		AL442644
S/G/Y/R/B/O	NT_008470	AL354701	94579142	3
S/G/Y/R/B/O	NT_008470	AL450312	94708508	3
S/G/Y/R/B/O	NT_008470	AL365396	94943592	3	RH13576	9	333.51			1		AL365396
S/G/Y/R/B/O	NT_008470	AL449304	94996159	3	RH62794	9	333.51	9	364.70	1		AL449304
S/G/Y/R/B/O	NT_008470	AL359679	95020247	3
S/G/Y/R/B/O	NT_008470	AL589823	95212266	3	CHLC.GGAA22E01			9	364.50	1		AL589823
S/G/Y/R/B/O	NT_008470	AL589844	95222182	3
S/G/Y/R/B/O	NT_008470	AL390962	95378164	3
S/G/Y/R/B/O	NT_008470	AL356576	95547734	3
S/G/Y/R/B/O	NT_008470	AL662794	95567632	3
S/G/Y/R/B/O	NT_008470	AL590386	95587113	3
S/G/Y/R/B/O	NT_008470	AL512639	95675623	3
S/G/Y/R/B/O	NT_008470	AL590381	95838397	2
S/G/Y/R/B/O	NT_008470	AL161791	96086283	3	RH28591	9	336.75			1		AL161791
S/G/Y/R/B/O	NT_008470	AL354938	96130046	3	RH26090	9	336.65			1		AC018597, AL354938
S/G/Y/R/B/O	NT_008470	AL354938	96131313	3	RH62849	9	336.65	9	395.70	1		AC018597, AL354938
S/G/Y/R/B/O	NT_008470	AL596402	96303386	3
S/G/Y/R/B/O	NT_008470	AL512646	96305380	3
S/G/Y/R/B/O	NT_008470	AL450426	96459840	3
S/G/Y/R/B/O	NT_008470	AL359846	96765284	3	RH62896	9	339.25	9	399.60	1		AF287262, AL359846
S/G/Y/R/B/O	NT_008470	AL359846	96771483	3	RH81050	9	340.78			1		AF275948, AF287262, AL359846
S/G/Y/R/B/O	NT_008470	AL353685	96784044	3	RH70166	9	340.80			1		AF275948, AF287262, AL353685
S/G/Y/R/B/O	NT_008470	AL353685	96878363	3	RH67642	9	341.01			1		AF275948, AF287262, AL353685
S/G/Y/R/B/O	NT_008470	AL353685	96878480	3	RH75335	9	340.58			1		AC012230, AF275948, AF287262, AL353685
S/G/Y/R/B/O	NT_008470	AL359182	96903362	3
S/G/Y/R/B/O	NT_008470	AL669893	96998079	3
S/G/Y/R/B/O	NT_008470	AL591506	97040846	3
S/G/Y/R/B/O	NT_008470	AL590368	97214668	3
S/G/Y/R/B/O	NT_008470	AL450265	97305578	3
S/G/Y/R/B/O	NT_008470	AL161627	97381113	3	RH63096	9	340.99	9	399.20	1		AL161627
S/G/Y/R/B/O	NT_008470	AL161627	97381664	3	RH62987	9	341.01	9	398.10	1		AL161627
S/G/Y/R/B/O	NT_008470	AL161627	97382898	3	RH80442	9	340.68			1		AL161627
S/G/Y/R/B/O	NT_008470	AL161627	97387506	3	RH63151	9	340.88	9	398.10	1		AL161627
S/G/Y/R/B/O	NT_008470	AL161627	97387513	3	RH16801	9	341.11			1		AL161627
S/G/Y/R/B/O	NT_008470	AL161627	97387557	3	RH12003	9	341.11			1		AL161627
S/G/Y/R/B/O	NT_008470	AL161627	97428731	3	RH80136	9	340.48			1		AJ245620, AL161627
S/G/Y/R/B/O	NT_008470	AL158070	97539280	3	RH40376	9	342.70			1		AB038490, AL158070
S/G/Y/R/B/O	NT_008470	AL158070	97540086	3	RH28643	9	344.70			1		AB038490, AL158070
S/G/Y/R/B/O	NT_008470	AL158070	97541757	3	RH63010	9	341.19	9	403.70	1		AB038490, AL158070
S/G/Y/R/B/O	NT_008470	AL158070	97631281	3	RH40405	9	342.70			1		AB038490, AL158070
S/G/Y/R/B/O	NT_008470	AL627247	97699618	3	RH26834	1	83.60			3	AC090439, AL031679, AL590609,	AC090439, AL031679, AL590609, AY048592
S/G/Y/R/B/O	NT_008470	AL592437	97700635	3
S/G/Y/R/B/O	NT_008470	AL592488	97752160	3
S/G/Y/R/B/O	NT_008470	AL392084	97901004	3	RH42195	9	342.70	9	401.60	1		AL392084
S/G/Y/R/B/O	NT_008470	AC036169	98013705	1
S/G/Y/R/B/O	NT_008470		-		RH10238	9	323.33			0
S/G/Y/R/B/O	NT_008470		-		SGC35135			9	394.80	3	AC015671,	AC015671
S/G/Y/R/B/O	NT_008470		-		WI-4062			9	395.30	1	AL365195,	AL365195
S/G/Y/R/B/O	NT_008470		-		RH63061	9	336.96	9	395.30	0	AL161791,	AL161791

NT_008470 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_008470	-	RH63093	9	339.67	9	395.80	1	AL449105,	AL449105
S/G/Y/R/B/O	NT_008470	-	RH68978	9	338.84			0
S/G/Y/R/B/O	NT_008470	-	RH79948	9	343.00			2	AC027697, AL512601,	AC027697, AL512601