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  Chromosome 9 - RH Maps - Single Contig
 

Chromosome 9 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_017568
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_017568AC0023201040768441          
S/G/Y/R/B/O NT_017568AL4491051041619571RH986409356.13    2 AL449105, AL449105
S/G/Y/R/B/O NT_017568AL4491051041766511RH986409356.13    2 AL449105, AL449105
S/G/Y/R/B/O NT_017568AL4491051042181761RH404029358.64    1 AL449105
S/G/Y/R/B/O NT_017568AL4491051042199761RH630939339.67  9395.801 AL449105
S/G/Y/R/B/O NT_017568AL4491051042207711RH630639356.13  9429.101 AL449105
S/G/Y/R/B/O NT_017568AL4491051042207861RH628799356.13  9429.101 AL449105
S/G/Y/R/B/O NT_017568AL4491051042209471RH171669358.64    1 AL449105
S/G/Y/R/B/O NT_017568AL4491051042217101RH271269355.65    1 AL449105
S/G/Y/R/B/O NT_017568AL4491051042226151RH628229356.13  9430.801 AL449105
S/G/Y/R/B/O NT_017568AL4491051042227621RH169009356.13    1 AL449105
S/G/Y/R/B/O NT_017568AL4493051042800973RH1037089356.13    1AL449105, AL449105, AL449305
S/G/Y/R/B/O NT_017568AL4493051043214593RH122459357.94    1 AL449305
S/G/Y/R/B/O NT_017568AL4493051043494843RH8579  93761.00  1 AL449305
S/G/Y/R/B/O NT_017568AL4493051043494913RH627559357.94  9435.301 AL449305
S/G/Y/R/B/O NT_017568AL4493051043496253RH7803  93776.00  1 AL449305
S/G/Y/R/B/O NT_017568AL4493051043678733RH159789357.94    1 AL449305
S/G/Y/R/B/O NT_017568AL4493051043684843RH122489357.94    1 AL449305
S/G/Y/R/B/O NT_017568AL4493051043727943RH165889357.94    1 AL449305
S/G/Y/R/B/O NT_017568AL4493051043738293RH923909357.94    1 AL449305
S/G/Y/R/B/O NT_017568AL4493051043788883WI-3030    9435.401 AL449305
S/G/Y/R/B/O NT_017568AL1370661044279603RH630279357.9493776.009429.001 AL137066
S/G/Y/R/B/O NT_017568AL1370661044281493RH359229357.94    1 AL137066
S/G/Y/R/B/O NT_017568AL1370661044305433RH626869356.13  9430.801 AL137066
S/G/Y/R/B/O NT_017568AL1370661044305453RH268969358.24    1  
S/G/Y/R/B/O NT_017568AL1370661044306963RH913679357.94    1 AL137066
S/G/Y/R/B/O NT_017568AL1370661044452053RH714679357.94    1 AL137066, X64467
S/G/Y/R/B/O NT_017568AL1370661044452933RH404569357.94    1 AL137066, X64467
S/G/Y/R/B/O NT_017568AL1370661044643723RH74562  93782.00  1 AF261689, AL137066
S/G/Y/R/B/O NT_017568AL3594551045223493RH154269357.94    1 AL359455
S/G/Y/R/B/O NT_017568AL3594551045223493RH536  93761.00  1 AL359455
S/G/Y/R/B/O NT_017568AL3594551045613573RH369219357.94    1 AL359455
S/G/Y/R/B/O NT_017568AL3594551046010653RH106769358.64    1AC002320, AC002320, AL359455
S/G/Y/R/B/O NT_017568AL3594551046011183WI-6799    9430.801AC002320, AC002320, AL359455
S/G/Y/R/B/O NT_017568AL3594551046011183RH631309356.03    1AC002320, AC002320, AL359455
S/G/Y/R/B/O NT_017568AL3594551046011653RH74572  93752.00  1AC002320, AC002320, AL359455
S/G/Y/R/B/O NT_017568AL1627271046064373RH629129357.94  9429.001AC002320, AC002320, AL162727
S/G/Y/R/B/O NT_017568AL1627271046540573RH808239357.94    1 AL162727
S/G/Y/R/B/O NT_017568AL1627271046546073RH753629367.24    1 AL162727
S/G/Y/R/B/O NT_017568AL1627271046546093RH365729357.94    1 AL162727
S/G/Y/R/B/O NT_017568AL1627271047115083WI-6432    9429.001 AC022644, AL162727
S/G/Y/R/B/O NT_017568AL1577021047159583          
S/G/Y/R/B/O NT_017568AL1623931050442743RH655709357.94    1 AL162393
S/G/Y/R/B/O NT_017568AL1378501051069323RH630239367.24  9438.001 AC011161, AL137850
S/G/Y/R/B/O NT_017568AL1378501051126193RH403799358.64    1 AC011161, AL137850
S/G/Y/R/B/O NT_017568AL1378501051133513RH786909367.55    1 AC011161, AL137850
S/G/Y/R/B/O NT_017568AL1378501051169593RH403729357.94    1 AC011161, AL137850, M88249, X54818
S/G/Y/R/B/O NT_017568AL1378501051548703RH265329357.94    1 AC011161, AL137850
S/G/Y/R/B/O NT_017568AL4455431051867643RH31113  93788.00  1 AC011161, AL445543
S/G/Y/R/B/O NT_017568AL3567961053683523RH629719357.94  9429.001 AC024555


  NT_017568 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_017568AL3567961053694753RH184039358.64    1 AC024555, AL356796
S/G/Y/R/B/O NT_017568AL3567961053833913RH404519357.94    2 AC024555, AC024555, AF336382, AF336382, AF336382, AL356796, AL356796, M21540
S/G/Y/R/B/O NT_017568AL3567961053901683RH404519357.94    2 AC024555, AC024555, AF336382, AF336382, AF336382, AL356796, AL356796, M21540
S/G/Y/R/B/O NT_017568AL3567961054423103RH658609364.92    1 AC024555, AF336382, AL356796
S/G/Y/R/B/O NT_017568AL1388951054594543RH993109357.94    1 AF336382, AL138895
S/G/Y/R/B/O NT_017568AL1602751056501483RH986279357.94    1 AL160275, AL645562
S/G/Y/R/B/O NT_017568AL1602751057023043RH632089357.94  9429.001 AL160275, AL645562
S/G/Y/R/B/O NT_017568AL1602751057032643RH119429357.94    1 AL160275, AL645562
S/G/Y/R/B/O NT_017568AL3902401057724933          
S/G/Y/R/B/O NT_017568AL1334121059197163RH630579358.64  9435.301 AL133412
S/G/Y/R/B/O NT_017568AL1334121059588673RH629829357.9493841.009429.001 AL133412
S/G/Y/R/B/O NT_017568AL1334121059589173RH119699357.94    1 AL133412
S/G/Y/R/B/O NT_017568AL1334121059599423RH627699357.94  9435.201 AL133412
S/G/Y/R/B/O NT_017568AL1624251060767223RH756519356.94    1 AL162425
S/G/Y/R/B/O NT_017568AL1624251060776233RH627539357.94  9435.201 AL162425
S/G/Y/R/B/O NT_017568AL1624251060776233RH627959356.93  9436.901 AL162425
S/G/Y/R/B/O NT_017568AL1624251060776553RH679739357.94    1 AL162425
S/G/Y/R/B/O NT_017568AL1624251060778313RH403689357.94    1 AL162425
S/G/Y/R/B/O NT_017568AL1624251060790083RH483939357.94    1 AL162425
S/G/Y/R/B/O NT_017568AL1624251061045113RH923519367.55    1 AL162425
S/G/Y/R/B/O NT_017568AL1624251061670873RH404429357.94    1 AL162425, AL353589
S/G/Y/R/B/O NT_017568AL1624251061932653RH34797  93888.00  1 AL353589
S/G/Y/R/B/O NT_017568AL3556011062088213WI-10548    9435.201 AL353589, AL355601
S/G/Y/R/B/O NT_017568AB0208691063881383RH632139357.94  9435.201 AB020869
S/G/Y/R/B/O NT_017568AB0208701064382383          
S/G/Y/R/B/O NT_017568AB0208711065382383          
S/G/Y/R/B/O NT_017568AB0208721066382383          
S/G/Y/R/B/O NT_017568AB0208731067846853RH423209359.55  9429.001 AB020873
S/G/Y/R/B/O NT_017568AB0208731067846853RH1163  93863.00  1 AB020873
S/G/Y/R/B/O NT_017568AB0208741068382383          
S/G/Y/R/B/O NT_017568AB0208751069756433RH181839359.55    1 AB020875
S/G/Y/R/B/O NT_017568AB0208751070002573RH365959359.55    1 AB020875
S/G/Y/R/B/O NT_017568AB0208761070813363WI-3042    9429.001 AB020876, AC018530, AL691426
S/G/Y/R/B/O NT_017568AB0208761070996753RH118479359.55    1 AB020876, AC018530, AL691426
S/G/Y/R/B/O NT_017568AB0208771071382383          
S/G/Y/R/B/O NT_017568AB0208781072760643RH403849360.05    1 AB020878
S/G/Y/R/B/O NT_017568AB0208781072792323RH650959356.13    1 AB020878
S/G/Y/R/B/O NT_017568AB0208781073115893RH361869360.35    1 AB020878
S/G/Y/R/B/O NT_017568AB0208781073227263RH628929356.13  9429.101 AB020878
S/G/Y/R/B/O NT_017568AB0208781073246693RH164429360.35    1 AB020878
S/G/Y/R/B/O NT_017568AB0208781073355063RH700839360.35    1 AB020878
S/G/Y/R/B/O NT_017568AB0208781073469313RH1040189360.35    1AL353141, AB020878, AL353141
S/G/Y/R/B/O NT_017568AL3531411073638393RH32979  93927.009432.301 AL353141
S/G/Y/R/B/O NT_017568AL3531411073638393RH628689355.65    1 AL353141
S/G/Y/R/B/O NT_017568AL1370241073695503RH684849360.05    1 AL137024
S/G/Y/R/B/O NT_017568AL1370241073814263RH700329360.05    1 AL137024
S/G/Y/R/B/O NT_017568AL1370241073958743RH778929360.35    1 AL137024
S/G/Y/R/B/O NT_017568AL1370241074321403RH631329360.35  9427.601 AL137024
S/G/Y/R/B/O NT_017568AL1370241074475723WI-4620    9432.301 AL137024
S/G/Y/R/B/O NT_017568AL1370241074584993RH660189361.36    1 AC032004, AL137024


  NT_017568 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_017568AL1370241074835493SGC35708    9427.101 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241074836263RH627389361.3693908.00  1 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241074844793RH699769360.86    1 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241074850723RH628339360.86  9426.001 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241074850743WI-18717    9432.201 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241074850743RH629999355.73    1 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241074852313RH172489360.86    1 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241074857163RH1030709355.65    1 AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241074865103RH365039360.86    1 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241074867923RH122289361.36    1 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241074882503RH403319360.86    1 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241074890543WI-17377    9430.801 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241074890543RH630049355.62    1 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241074891393RH169909360.86    1 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL1370241075122353RH631649362.84  9437.601 AC007940, AC032004, AL137024
S/G/Y/R/B/O NT_017568AL6699631075236693          
S/G/Y/R/B/O NT_017568AL1332821076102453RH14610  93917.009432.301 AC007940, AC032004, AL133282
S/G/Y/R/B/O NT_017568AL1332821076102453RH629959355.73    1 AC007940, AC032004, AL133282
S/G/Y/R/B/O NT_017568AL1332841076654083RH131929361.36    1 AL133284
S/G/Y/R/B/O NT_017568AL1332841077866953RH180109360.86    1 AL133284
S/G/Y/R/B/O NT_017568AL1332841077867113RH631959361.3693917.009426.001 AL133284
S/G/Y/R/B/O NT_017568AL1332841077881263RH185379361.36    1 AL133284
S/G/Y/R/B/O NT_017568AL1578291079384253CHLC.GATA61E12    9425.901 AL157829
S/G/Y/R/B/O NT_017568AL1578291079480253RH31114  93957.00  1 AL157829
S/G/Y/R/B/O NT_017568AL3920851079712493          
S/G/Y/R/B/O NT_017568AL3549811082156801WI-5578    9439.201 AL354981
S/G/Y/R/B/O NT_017568AL3556081082396033          
S/G/Y/R/B/O NT_017568AL3587921083875313RH628029364.92  9426.601 AL358792
S/G/Y/R/B/O NT_017568AL4456441085371243          
S/G/Y/R/B/O NT_017568AL1616301085746873          
S/G/Y/R/B/O NT_017568AL1602721087973171RH676469365.02    1 AF172171, AF177765, AL160272
S/G/Y/R/B/O NT_017568AL1602721088022971RH628459365.02  9426.601 AL160272
S/G/Y/R/B/O NT_017568AL1602721088066921RH631459365.02  9439.201 AL160272
S/G/Y/R/B/O NT_017568AL1602721088067511RH427429365.0293977.00  1 AL160272
S/G/Y/R/B/O NT_017568AL3547541089185413          
S/G/Y/R/B/O NT_017568AL4456631090340733          
S/G/Y/R/B/O NT_017568AL1588311093829393WI-5523    9442.101 AL158831
S/G/Y/R/B/O NT_017568AL3651951094155203CHLC.GATA64G07    9440.701 AL365195
S/G/Y/R/B/O NT_017568AL3651951094575843WI-4062    9395.301 AL365195
S/G/Y/R/B/O NT_017568AL4454401094738193          
S/G/Y/R/B/O NT_017568AL3555921097699593RH921789366.53    1 AL355592
S/G/Y/R/B/O NT_017568AL5897031098081023          
S/G/Y/R/B/O NT_017568AL1577801098547992          
S/G/Y/R/B/O NT_017568AL5126021100129133          
S/G/Y/R/B/O NT_017568AL4453101100461003          
S/G/Y/R/B/O NT_017568AL3537731102488833RH368469366.73    1 AC006239, AL353773
S/G/Y/R/B/O NT_017568AL3537731102491363RH627609366.53  9442.401 AC006239, AL353773
S/G/Y/R/B/O NT_017568AL1388941103853603AFMA239ZE1    9443.201 AL138894
S/G/Y/R/B/O NT_017568AL1388941104461813RH631209367.96  9443.201 AL138894
S/G/Y/R/B/O NT_017568AL1388941104491513RH151769368.17    1 AL138894


  NT_017568 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_017568AL1388941104491513D9S195    9450.201 AL138894
S/G/Y/R/B/O NT_017568AL1388941104591053RH33281  94031.00  1 AL138894
S/G/Y/R/B/O NT_017568AL1388941104592503RH474159367.96    1 AL138894
S/G/Y/R/B/O NT_017568AL3536301104641273          
S/G/Y/R/B/O NT_017568AC0062881107434623WI-1306    9442.501AL445683, AC006288, AL445683
S/G/Y/R/B/O NT_017568AL4456831107657113          
S/G/Y/R/B/O NT_017568AL3549311108933763          
S/G/Y/R/B/O NT_017568AL4419891110705853WI-5725    9424.201 AL441989
S/G/Y/R/B/O NT_017568AL3555891111337443RH1043969368.58    1 AL355589
S/G/Y/R/B/O NT_017568AL3555891112461913RH134849371.9594071.00  1 AC006952, AL355589
S/G/Y/R/B/O NT_017568AL5925491113121973CHLC.GATA65D11    9445.501 AC006952, AL592549
S/G/Y/R/B/O NT_017568AL3537361114710343RH630679374.08  9450.201 AL353736
S/G/Y/R/B/O NT_017568AL3537361114882993RH628179369.45  9445.601 AL353736
S/G/Y/R/B/O NT_017568AL3537361114883213RH167799373.85    1 AL353736
S/G/Y/R/B/O NT_017568AL3918701115381433          
S/G/Y/R/B/O NT_017568AL5906421116101013RH1042419370.24    1 AC110007, AL353761, AL590642
S/G/Y/R/B/O NT_017568AL5906421116173673WI-3020    9450.201 AC110007, AL353761, AL590642
S/G/Y/R/B/O NT_017568AL1388361116579033RH404239373.88    1 AC110007, AL138836, AL353761
S/G/Y/R/B/O NT_017568AL1388361116830773RH178439373.85    1AC015881, AC015881, AL138836, AL353761
S/G/Y/R/B/O NT_017568AL1388361116831483RH472269370.03    1AC015881, AC015881, AL138836, AL353761
S/G/Y/R/B/O NT_017568AL1388361116858343RH403989370.24    1AC015881, AC015881, AL138836, AL353761
S/G/Y/R/B/O NT_017568AL1388361117176863RH806779370.13    1AC015881, AC015881, AL138836, AL353761
S/G/Y/R/B/O NT_017568AL1388361117177793RH404289370.24    1AC015881, AC015881, AL138836, AL353761
S/G/Y/R/B/O NT_017568AL1388361118179163RH486619370.03    1AC015881, AC015881, AL138836
S/G/Y/R/B/O NT_017568AL1619111118413413RH366659375.65    1 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111118413433RH627049370.21  9445.501AC015881, AC015881, AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111118413723RH764609374.60    1AC015881, AC015881, AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111118430723RH403969373.98    1AC015881, AC015881, AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111118463213RH8825  94191.00  1AC015881, AC015881, AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111118989613RH253029370.21    1 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111118997513RH627989370.21  9445.501 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111118997513RH14797  94191.00  1 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111118998163RH403299373.98    1 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111119271943RH627319370.24  9445.501 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111119271943RH33549  94188.00  1 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111119271943RH163759370.24    1 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111119293703RH988709370.24    1 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111119330913RH630769370.13  9443.801 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111119330913RH697989373.85    1 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111119350693RH174699374.08    1 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111119355243RH986229373.85    1 AL161911
S/G/Y/R/B/O NT_017568AL1619111119360113RH14283  94191.00  1 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111119363363RH403359373.88    1 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111119378353RH472159370.03    1 AL161911, AL354792
S/G/Y/R/B/O NT_017568AL1619111119378353RH32523  94188.00  1 AL161911, AL354792
S/G/Y/R/B/O NT_017568AC0158811119493211          
S/G/Y/R/B/O NT_017568 - RH115879363.14    0  
S/G/Y/R/B/O NT_017568 - WI-18346    9432.301AL158824, AL158824
S/G/Y/R/B/O NT_017568 - RH268699367.45    1AL138756, AC010824, AL138756
S/G/Y/R/B/O NT_017568 - IB656    9432.401AL359073, AL359073


  NT_017568 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_017568 - RH365459361.36    0  
S/G/Y/R/B/O NT_017568 - D9S174    9433.701AL162588, AL162588
S/G/Y/R/B/O NT_017568 - RH404159358.22    0  
S/G/Y/R/B/O NT_017568 - RH454689357.94    0AL359455, AL359455
S/G/Y/R/B/O NT_017568 - RH658059367.55    0AL390067, AC067868, AL390067
S/G/Y/R/B/O NT_017568 - RH660479373.88    0 AC011969
S/G/Y/R/B/O NT_017568 - RH664799368.27    1AL135787, AL135787
S/G/Y/R/B/O NT_017568 - RH785879357.94    0  
S/G/Y/R/B/O NT_017568 - RH787899367.55    0  
S/G/Y/R/B/O NT_017568 - RH982649357.94    0