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  Chromosome 9 - RH Maps - Single Contig
 

Chromosome 9 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_008580
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008580AL353608599324963          
S/G/Y/R/B/O NT_008580AL161457602103123RH2708012214.97    1 AC025021, AC091528, AL161457
S/G/Y/R/B/O NT_008580AL353616602409943RH155989229.64    1 AL353616
S/G/Y/R/B/O NT_008580AL353616602418703RH403669231.59    1 AC025021, AL353616, L40933
S/G/Y/R/B/O NT_008580AL354794604103433WI-3564    9263.801 AL354794
S/G/Y/R/B/O NT_008580AL354794604939033RH674239233.10    1 AL354794
S/G/Y/R/B/O NT_008580AL354794604947333RH257879237.09    1 AL354794
S/G/Y/R/B/O NT_008580AL354794604961033RH172789233.10    1 AL354794
S/G/Y/R/B/O NT_008580AL356219605923823RH155279233.10    1 AL356219
S/G/Y/R/B/O NT_008580AL162730607204143RH759309226.15    1 AL162730
S/G/Y/R/B/O NT_008580AL162730607245433RH691289233.10    1 AJ001597, AL162730
S/G/Y/R/B/O NT_008580AL162730607847903RH628309234.71  9266.201 AL162730
S/G/Y/R/B/O NT_008580AL162730607907183RH932169237.09    1 AL162730
S/G/Y/R/B/O NT_008580AL590238608345893          
S/G/Y/R/B/O NT_008580AL358113609614223RH629319219.6491891.009257.701 AL358113
S/G/Y/R/B/O NT_008580AL358113609663873RH626549219.51  9257.701 AL358113
S/G/Y/R/B/O NT_008580AL358113609666813RH630629235.85  9245.101 AL358113
S/G/Y/R/B/O NT_008580AL358113609668143RH397621258.21    1 AL358113
S/G/Y/R/B/O NT_008580AL355140610931422RH695249234.81    1 AL355140
S/G/Y/R/B/O NT_008580AL355140610993612RH261729237.09    1 AL355140
S/G/Y/R/B/O NT_008580AL355140611395632RH930219238.02    1 AL355140
S/G/Y/R/B/O NT_008580AL355140611403222RH628639219.28  9252.701 AL355140
S/G/Y/R/B/O NT_008580AL355140611424132RH175979238.02    1 AL355140
S/G/Y/R/B/O NT_008580AL353693611890403          
S/G/Y/R/B/O NT_008580AL162421612967343WI-4122    9265.501 AC008248
S/G/Y/R/B/O NT_008580AL162421613451433RH480249238.02    1 AC008248, AL162421
S/G/Y/R/B/O NT_008580AL162412613800941RH629939220.77  9252.801 AC008248, AL162412
S/G/Y/R/B/O NT_008580AL162412614215121RH256669238.53    1 AC008248, AL162412
S/G/Y/R/B/O NT_008580AL162412614240411RH631679237.92  9243.201 AC008248, AL162412
S/G/Y/R/B/O NT_008580AL162412614415521RH362459240.14    1 AC008248, AL162412
S/G/Y/R/B/O NT_008580AL603625615440503          
S/G/Y/R/B/O NT_008580AL591215616364202RH136009240.1491935.00  1 AC022857, AL591215
S/G/Y/R/B/O NT_008580AL606666617080343          
S/G/Y/R/B/O NT_008580AL392044618400231WI-5564    9272.401 AL392044
S/G/Y/R/B/O NT_008580AL392044618844931WI-2979    9275.101 AL392044
S/G/Y/R/B/O NT_008580AL158153619059953RH403949243.79    1 AL158153
S/G/Y/R/B/O NT_008580AL158153619292163RH471836155.42    3AL121759, AL158815, AL121759, AL158153, AL158815
S/G/Y/R/B/O NT_008580AL162390620666133RH626579244.37  9277.601 AL162390
S/G/Y/R/B/O NT_008580AL162390620666423RH403289245.80    1 AL162390
S/G/Y/R/B/O NT_008580AL162390620666723RH74552  91984.00  1 AL162390
S/G/Y/R/B/O NT_008580AL162390620965443RH631079244.40  9279.101 AL162390, AL356139
S/G/Y/R/B/O NT_008580AL162390621189443RH13887  91981.00  1 AL162390, AL356139
S/G/Y/R/B/O NT_008580AL442645622439173RH627719244.20  9269.901 AL356139, AL442645
S/G/Y/R/B/O NT_008580AL358786622858913RH421229245.80  9280.601 AL358786
S/G/Y/R/B/O NT_008580AL358786622858913RH38602  91962.00  1 AL358786
S/G/Y/R/B/O NT_008580AL358786623197743RH1029019245.80    1 AL358786
S/G/Y/R/B/O NT_008580AL358786623243913RH1038099244.30    1 AL358786
S/G/Y/R/B/O NT_008580AL358786623692583RH14791  91962.00  1 AL358786
S/G/Y/R/B/O NT_008580AL159990625014033RH266459249.27    1 AL159990
S/G/Y/R/B/O NT_008580AL159990625433493RH101349256.22    1 AL159990


  NT_008580 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008580AL159990625447103RH1042189250.93    1  
S/G/Y/R/B/O NT_008580AL356318625557943RH701619250.93    1 AL356318
S/G/Y/R/B/O NT_008580AL592438627154113RH173429250.93    1 AL592213, AL592438
S/G/Y/R/B/O NT_008580AL592438627154613RH128659250.52    1 AL592213, AL592438
S/G/Y/R/B/O NT_008580AL161913627265753          
S/G/Y/R/B/O NT_008580AL160273628996803CHLC.GATA7D08    9288.101 AL160273
S/G/Y/R/B/O NT_008580AL160273628996833CHLC.GATA7D12.249    9289.601 AL160273
S/G/Y/R/B/O NT_008580AL391819630204063          
S/G/Y/R/B/O NT_008580AL392106631821083          
S/G/Y/R/B/O NT_008580AL161732633957233RH403909252.75    1 AC024723, AL161732
S/G/Y/R/B/O NT_008580AL161732634097123RH116059252.75    1 AC024723, AL161732
S/G/Y/R/B/O NT_008580AL161732634588103RH162369252.75    1AL671309, AC024723, AL161732, AL671309
S/G/Y/R/B/O NT_008580AL161732634591393RH462429256.22    1AL671309, AC024723, AL161732, AL671309
S/G/Y/R/B/O NT_008580AL671309635771912RH404299252.75    1 AC073124, AL671309
S/G/Y/R/B/O NT_008580AL671309635773432RH38057  92011.00  2AC097313, AC073124, AC097313, AL671309
S/G/Y/R/B/O NT_008580AL138751636085153AFMA116YG9    9288.101 AC073124, AL138751
S/G/Y/R/B/O NT_008580AL138751636508503RH672939252.75    1 AL138751
S/G/Y/R/B/O NT_008580AL138751636955603RH629729256.32  9268.301 AL138751
S/G/Y/R/B/O NT_008580AL138751636976413RH693599252.85    1 AL138751
S/G/Y/R/B/O NT_008580AL138751637634653RH929159256.43    1 AL138751
S/G/Y/R/B/O NT_008580AL583829637798903          
S/G/Y/R/B/O NT_008580AL590311638797613RH285829255.39    1 AL590311
S/G/Y/R/B/O NT_008580AL590311638815483RH183899252.75    1 AL590311
S/G/Y/R/B/O NT_008580AL135924639608183RH124849252.75    1 AL135924
S/G/Y/R/B/O NT_008580AL135924639639073RH251069252.75    1 AL135924
S/G/Y/R/B/O NT_008580AL135924639639623RH127879256.22    1 AL135924
S/G/Y/R/B/O NT_008580AL135924640271453RH756689253.15    1 AL135924
S/G/Y/R/B/O NT_008580AL135924640273303RH31098  92023.00  1 AL135924
S/G/Y/R/B/O NT_008580AL135924640620313RH366089252.85    1 AL135924
S/G/Y/R/B/O NT_008580AL445646641183813          
S/G/Y/R/B/O NT_008580AL596448641828753RH475486532.71    5AC058820, AC069587, AC091167, AL138721, AP001324, AC011686, AC058820, AC069587, AC091167, AL138721, AL513214, AL596448, AP001324
S/G/Y/R/B/O NT_008580AL449323641908753          
S/G/Y/R/B/O NT_008580AL591662643297193RH495149252.7592071.00  1 AL591662
S/G/Y/R/B/O NT_008580AL590662644770683          
S/G/Y/R/B/O NT_008580AL162416645092393          
S/G/Y/R/B/O NT_008580AL591031646126103RH1347  92046.00  1 AL591031
S/G/Y/R/B/O NT_008580AL591031646126843RH127409255.39    1 AL591031
S/G/Y/R/B/O NT_008580AL359997648637823RH404379252.75    1 AL359997
S/G/Y/R/B/O NT_008580AL359997648772193RH676449252.75    1 AL359997
S/G/Y/R/B/O NT_008580AL359997648772763RH403459252.75    1 AL359997
S/G/Y/R/B/O NT_008580AL359997648778743RH684099252.75    1 AL359997
S/G/Y/R/B/O NT_008580AL359997648820493RH628559254.5792058.009287.601 AL359997
S/G/Y/R/B/O NT_008580AL449083648848483          
S/G/Y/R/B/O NT_008580AL355604650117932          
S/G/Y/R/B/O NT_008580AL451127651928033          
S/G/Y/R/B/O NT_008580AL512594653016613          
S/G/Y/R/B/O NT_008580AL627324654658533          
S/G/Y/R/B/O NT_008580AL513124654935402          
S/G/Y/R/B/O NT_008580AL512644656643063          
S/G/Y/R/B/O NT_008580AL603652658062253          


  NT_008580 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008580AL357872658827643WI-3309    9291.701 AC019287, AL357872
S/G/Y/R/B/O NT_008580AL357872659200913CHLC.GATA28C02    9297.201 AL357872
S/G/Y/R/B/O NT_008580AL355152659529043          
S/G/Y/R/B/O NT_008580AL355674662303703RH265979256.32    1 AL355674
S/G/Y/R/B/O NT_008580AL355674662316693RH629309257.77  9294.201 AL355674
S/G/Y/R/B/O NT_008580AL355674662317613RH627639257.57  9293.701 AL355674
S/G/Y/R/B/O NT_008580AL137018663579033RH485899257.87    1 AL137018
S/G/Y/R/B/O NT_008580AL137018663730963RH628989257.87  9293.501 AL137018
S/G/Y/R/B/O NT_008580AL137018663731743RH74553  92409.00  1 AL137018
S/G/Y/R/B/O NT_008580AL137018663837813WI-3909    9295.301 AL137018
S/G/Y/R/B/O NT_008580AL137018664002183RH630089256.2292417.009293.401 AL137018
S/G/Y/R/B/O NT_008580AL158833664035513RH627399256.22  9291.801 AL158833
S/G/Y/R/B/O NT_008580AL158833664048553RH630129257.47  9295.301 AL158833
S/G/Y/R/B/O NT_008580AL158833664049893RH751779256.22    1 AL158833
S/G/Y/R/B/O NT_008580AL354795664096672          
S/G/Y/R/B/O NT_008580AL390874666048573          
S/G/Y/R/B/O NT_008580AL158825666585233RH630779261.63  9297.401 AL158825
S/G/Y/R/B/O NT_008580AL133548667731403RH632009259.69  9294.001 AL133548
S/G/Y/R/B/O NT_008580AL133548667731403RH32347  94814.00  1 AL133548
S/G/Y/R/B/O NT_008580AL133548668541323RH628949259.69  9294.001 AL133548
S/G/Y/R/B/O NT_008580AL133548668542723RH163199257.77    1 AL133548
S/G/Y/R/B/O NT_008580AL133548668588583RH932839259.69    1 AL133548
S/G/Y/R/B/O NT_008580AL133548668599323RH926559257.87    1 AL133548
S/G/Y/R/B/O NT_008580AL133548668614603RH38181  92393.00  1 AL133548
S/G/Y/R/B/O NT_008580AL353756669036543RH631789259.79  9294.001 AL353756
S/G/Y/R/B/O NT_008580AL353756669037773RH182249259.69    1 AL353756
S/G/Y/R/B/O NT_008580AL158073670445783D9S175    9300.401 AL158073
S/G/Y/R/B/O NT_008580AL158073670445783RH133949259.6992223.00  1 AL158073
S/G/Y/R/B/O NT_008580AL158073671226663WI-5829    9293.901 AL158073
S/G/Y/R/B/O NT_008580AL158073671829643RH38544  92234.00  1 AC010828, AL158073
S/G/Y/R/B/O NT_008580AL353780672226413          
S/G/Y/R/B/O NT_008580AL160280673767983WI-3203    9301.901 AL160280
S/G/Y/R/B/O NT_008580AL157883674159103          
S/G/Y/R/B/O NT_008580AL359253675907883          
S/G/Y/R/B/O NT_008580AL353607678050323RH32333  92258.009302.601 AL353607, AL357653
S/G/Y/R/B/O NT_008580AL353607679051943RH38180  92262.00  1 AL353607
S/G/Y/R/B/O NT_008580AL353607679069103RH482039261.94    1 AL353607
S/G/Y/R/B/O NT_008580AL353607679074733RH631349259.79  9301.601 AL353607
S/G/Y/R/B/O NT_008580AL589653679223983WI-10813    9302.801 AL589653
S/G/Y/R/B/O NT_008580AL391868680974653RH630719261.89  9302.101 AL391868
S/G/Y/R/B/O NT_008580AL391868680975143RH171919259.69    1 AL391868
S/G/Y/R/B/O NT_008580AL391868680985593RH628979261.84  9301.301 AL391868
S/G/Y/R/B/O NT_008580AL590664681210023          
S/G/Y/R/B/O NT_008580AL161626682156053RH627499267.36  9305.301 AL138757, AL161626, L41415
S/G/Y/R/B/O NT_008580AL161626682159123RH177629267.36    1 AL138757, AL161626, L41415
S/G/Y/R/B/O NT_008580AL161626682173793RH1026679266.73    1 AL138757, AL161626
S/G/Y/R/B/O NT_008580AL161626682190093RH654999267.36    1 AL138757, AL161626
S/G/Y/R/B/O NT_008580AL161626683233153RH631939267.36  9305.301 AC009556, AL161626
S/G/Y/R/B/O NT_008580AL161626683233363RH669559267.36    1 AC009556, AL161626
S/G/Y/R/B/O NT_008580AL161626683300563RH629189267.4392293.009304.801 AC009556, AL161626


  NT_008580 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008580AL161626683300813RH163499267.36    1 AC009556, AL161626
S/G/Y/R/B/O NT_008580AL161626683302183RH676919268.47    1 AC009556, AL161626
S/G/Y/R/B/O NT_008580AL359314684184243RH680479267.43    1 AC009556, AL161625, AL359314
S/G/Y/R/B/O NT_008580AL359314684480343AFM207VB8    9305.301 AC009556, AL359314
S/G/Y/R/B/O NT_008580AL390239685187723RH31100  92301.00  1 AL390239
S/G/Y/R/B/O NT_008580AL390239685862993RH662819267.43    1 AL390239
S/G/Y/R/B/O NT_008580AL353637686264661          
S/G/Y/R/B/O NT_008580AL161789687858353CHLC.GATA89A11    9306.601 AL161789
S/G/Y/R/B/O NT_008580AL353710688360853          
S/G/Y/R/B/O NT_008580AL359204690184143RH31101  92313.00  1 AL359204
S/G/Y/R/B/O NT_008580AL158159690552913RH8844  92313.00  1 AL158159
S/G/Y/R/B/O NT_008580AL158159690969793RH632069267.3692325.009306.901 AL158159
S/G/Y/R/B/O NT_008580AL158159691292243RH32398  92359.009306.901 AL158159
S/G/Y/R/B/O NT_008580AL158159691293463RH268219267.95    1 AL158159
S/G/Y/R/B/O NT_008580AL158159691352023RH700859268.36    1 AL158159
S/G/Y/R/B/O NT_008580AL158159691357163RH1032809266.53    1 AL158159
S/G/Y/R/B/O NT_008580AL353794692112153          
S/G/Y/R/B/O NT_008580AL359849692795713          
S/G/Y/R/B/O NT_008580AL355535694284413RH669569266.53    1 AL355535
S/G/Y/R/B/O NT_008580AL355535694295493RH102999266.63    1 AC012196, AL355535
S/G/Y/R/B/O NT_008580AL355535694309053RH473899267.01    1 AC012196, AL355535
S/G/Y/R/B/O NT_008580AL355535694327793RH251759266.53    1 AC012196, AC022629, AL355535
S/G/Y/R/B/O NT_008580AL160268695219953CHLC.GATA89C08    9308.801 AC012196, AL160268
S/G/Y/R/B/O NT_008580AL160268695244013RH688629267.54    1 AC012196, AL160268
S/G/Y/R/B/O NT_008580AL160268695466493RH630899266.01  9308.801 AC012196, AL160268
S/G/Y/R/B/O NT_008580AL160278695904183RH756549266.32    1 AL160278, AL161456
S/G/Y/R/B/O NT_008580AL160278696018913RH470809267.68    1 AL160278, AL161456
S/G/Y/R/B/O NT_008580AL160278696992523RH912969266.01    1 AL160278
S/G/Y/R/B/O NT_008580AL160278697137213RH697699266.01    1 AL160278, AL161456
S/G/Y/R/B/O NT_008580 - RH1044489226.39    3AC011011, AC024055, AC090227, AL162252, AL512625, AP001450, AP001452, AP001847, AP002400, AC011011, AC024055, AC068344, AC079827, AC090227, AL162252, AL512625, AP001450, AP001452, AP001847, AP002400
S/G/Y/R/B/O NT_008580 - RH14404  92141.00  1AL359636, AF440204, AL353767, AL359636
S/G/Y/R/B/O NT_008580 - WI-17216    9307.801AL391650, AL391650
S/G/Y/R/B/O NT_008580 - RH119639266.53    0  
S/G/Y/R/B/O NT_008580 - RH32528  92123.00  1AC007066, AC007066, AC018466
S/G/Y/R/B/O NT_008580 - RH362079256.22    0  
S/G/Y/R/B/O NT_008580 - RH32995  92160.00  1AL390774, AL390774
S/G/Y/R/B/O NT_008580 - RH364789261.84    0  
S/G/Y/R/B/O NT_008580 - RH33269  92141.00  1AL162424, AL162424, AL353767
S/G/Y/R/B/O NT_008580 - RH33371  92117.00  1AL365338, AC007172, AL365338
S/G/Y/R/B/O NT_008580 - RH7857  92141.00  1AL359636, AF440204, AL353767, AL359636
S/G/Y/R/B/O NT_008580 - RH7919  92129.00  1AL359512, AL359512
S/G/Y/R/B/O NT_008580 - RH628589267.95  9308.802AL160054, AL160054
S/G/Y/R/B/O NT_008580 - RH755319266.63    0  
S/G/Y/R/B/O NT_008580 - RH779099245.90    0  
S/G/Y/R/B/O NT_008580 - RH781819266.32    0  
S/G/Y/R/B/O NT_008580 - RH928139259.69    0AL133548, AL133548
S/G/Y/R/B/O NT_008580 - RH933589266.01    0  
S/G/Y/R/B/O NT_008580 - RH981859262.46    0